data_NEF
#
_chem_comp.id NEF
_chem_comp.name 'Nitrocefin - open form'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C21 H18 N4 O9 S2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
'(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-09-26
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 534.519
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NEF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HR9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NEF C2 C1 C 0 1 N N N N N N -3.323 0.475 16.773 0.621 0.899 0.161 C2 NEF 1
NEF C3 C2 C 0 1 N N R N N N -5.723 2.833 17.157 -3.220 -0.803 0.131 C3 NEF 2
NEF C4 C3 C 0 1 N N N N N N -2.589 1.309 16.059 1.165 -0.475 -0.107 C4 NEF 3
NEF C6 C4 C 0 1 N N N N N N -1.727 0.677 15.058 2.568 -0.615 -0.168 C6 NEF 4
NEF C7 C5 C 0 1 N N N N N N -7.455 0.163 15.115 -6.215 1.575 -0.054 C7 NEF 5
NEF C8 C6 C 0 1 Y N N N N N -6.526 -0.990 15.003 -7.665 1.203 -0.229 C8 NEF 6
NEF C11 C7 C 0 1 Y N N N N N -4.793 -2.543 14.039 -9.992 0.620 -0.961 C11 NEF 7
NEF C13 C8 C 0 1 N N R N N N -4.452 2.488 17.901 -1.795 -0.467 -0.312 C13 NEF 8
NEF C14 C9 C 0 1 Y N N N N N 0.224 -0.770 14.761 4.823 0.331 -0.155 C14 NEF 9
NEF C15 C10 C 0 1 N N N N N N -2.627 2.782 16.234 0.428 -1.578 -0.291 C15 NEF 10
NEF C16 C11 C 0 1 N N N N N N -1.348 3.579 16.067 1.160 -2.817 -0.569 C16 NEF 11
NEF C17 C12 C 0 1 Y N N N N N 0.130 -0.708 13.381 5.394 -0.924 -0.387 C17 NEF 12
NEF S19 S1 S 0 1 N N N N N N -4.044 0.818 18.188 -1.069 0.763 0.819 S19 NEF 13
NEF C1 C13 C 0 1 N N N N N N -5.590 4.271 16.736 -3.192 -1.368 1.528 C1 NEF 14
NEF O2 O1 O 0 1 N N N N N N -5.533 4.585 15.590 -3.793 -0.812 2.417 O2 NEF 15
NEF N4 N1 N 0 1 N N N N N N -6.084 1.931 16.109 -4.038 0.413 0.112 N4 NEF 16
NEF C5 C14 C 0 1 N N N N N N -6.956 0.951 16.309 -5.374 0.324 -0.035 C5 NEF 17
NEF O6 O2 O 0 1 N N N N N N -7.341 0.662 17.408 -5.901 -0.762 -0.152 O6 NEF 18
NEF C9 C15 C 0 1 Y N N N N N -6.180 -2.007 15.862 -8.520 0.952 0.763 C9 NEF 19
NEF C10 C16 C 0 1 Y N N N N N -5.231 -2.844 15.303 -9.804 0.631 0.359 C10 NEF 20
NEF S12 S2 S 0 1 Y N N N N N -5.655 -1.144 13.542 -8.490 1.041 -1.774 S12 NEF 21
NEF N14 N2 N 0 1 N N N N N N -3.312 3.245 17.424 -0.954 -1.670 -0.247 N14 NEF 22
NEF O17 O3 O 0 1 N N N N N N -0.559 3.340 15.178 1.426 -3.123 -1.716 O17 NEF 23
NEF O18 O4 O 0 1 N N N N N N -1.139 4.501 16.844 1.539 -3.619 0.448 O18 NEF 24
NEF C12 C17 C 0 1 N N N N N N -0.756 -0.039 15.562 3.361 0.478 -0.091 C12 NEF 25
NEF C18 C18 C 0 1 Y N N N N N 1.017 -1.388 12.593 6.766 -1.054 -0.440 C18 NEF 26
NEF C19 C19 C 0 1 Y N N N N N 1.996 -2.143 13.197 7.577 0.053 -0.264 C19 NEF 27
NEF C20 C20 C 0 1 Y N N N N N 2.108 -2.212 14.571 7.019 1.299 -0.034 C20 NEF 28
NEF C21 C21 C 0 1 Y N N N N N 1.232 -1.510 15.382 5.650 1.446 0.022 C21 NEF 29
NEF N22 N3 N 1 1 N N N N N N 1.383 -1.662 16.778 5.056 2.778 0.274 N22 NEF 30
NEF N23 N4 N 1 1 N N N N N N 2.889 -2.831 12.404 9.049 -0.095 -0.322 N23 NEF 31
NEF O24 O5 O -1 1 N N N N N N 1.384 -0.624 17.695 5.576 3.535 1.075 O24 NEF 32
NEF O25 O6 O 0 1 N N N N N N 1.540 -2.967 17.255 4.047 3.118 -0.318 O25 NEF 33
NEF O26 O7 O -1 1 N N N N N N 2.747 -2.715 11.042 9.766 0.877 -0.168 O26 NEF 34
NEF O27 O8 O 0 1 N N N N N N 3.880 -3.618 12.988 9.543 -1.190 -0.524 O27 NEF 35
NEF H1 H1 H 0 1 N N N N N N -4.136 0.158 16.103 1.255 1.406 0.888 H1 NEF 36
NEF H2 H2 H 0 1 N N N N N N -2.666 -0.382 16.983 0.605 1.471 -0.767 H2 NEF 37
NEF H3 H3 H 0 1 N N N N N N -6.531 2.804 17.902 -3.648 -1.539 -0.550 H3 NEF 38
NEF H5 H5 H 0 1 N N N N N N -1.880 0.792 13.995 3.008 -1.595 -0.277 H5 NEF 39
NEF H7 H7 H 0 1 N N N N N N -7.420 0.778 14.204 -5.900 2.211 -0.881 H7 NEF 40
NEF H8 H8 H 0 1 N N N N N N -8.485 -0.185 15.284 -6.089 2.112 0.886 H8 NEF 41
NEF H9 H9 H 0 1 N N N N N N -4.051 -3.081 13.468 -10.925 0.392 -1.456 H9 NEF 42
NEF H10 H10 H 0 1 N N N N N N -4.629 2.862 18.920 -1.806 -0.075 -1.329 H10 NEF 43
NEF H12 H12 H 0 1 N N N N N N -0.650 -0.118 12.923 4.763 -1.790 -0.524 H12 NEF 44
NEF H14 H14 H 0 1 N N N N N N -5.670 2.041 15.205 -3.616 1.282 0.206 H14 NEF 45
NEF H15 H15 H 0 1 N N N N N N -6.597 -2.136 16.850 -8.232 0.997 1.803 H15 NEF 46
NEF H16 H16 H 0 1 N N N N N N -4.850 -3.700 15.840 -10.593 0.402 1.060 H16 NEF 47
NEF H19 H19 H 0 1 N N N N N N -0.322 4.928 16.617 2.016 -4.412 0.167 H19 NEF 48
NEF H20 H20 H 0 1 N N N N N N -0.673 -0.094 16.637 2.921 1.458 0.018 H20 NEF 49
NEF H22 H22 H 0 1 N N N N N N 0.950 -1.333 11.516 7.209 -2.023 -0.619 H22 NEF 50
NEF H23 H23 H 0 1 N N N N N N 2.884 -2.817 15.016 7.659 2.159 0.102 H23 NEF 51
NEF OXY OXY O 0 1 N Y N N N N ? ? ? -2.499 -2.489 1.785 OXY NEF 52
NEF HXY HXY H 0 1 N Y N N N N ? ? ? -2.511 -2.812 2.696 HXY NEF 53
NEF H4 H4 H 0 1 N N N N N N -2.639 3.264 18.164 -1.372 -2.542 -0.172 H4 NEF 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NEF O26 N23 SING N N 1
NEF N23 O27 DOUB N N 2
NEF N23 C19 SING N N 3
NEF C18 C19 DOUB Y N 4
NEF C18 C17 SING Y N 5
NEF C19 C20 SING Y N 6
NEF C17 C14 DOUB Y N 7
NEF S12 C11 SING Y N 8
NEF S12 C8 SING Y N 9
NEF C11 C10 DOUB Y N 10
NEF C20 C21 DOUB Y N 11
NEF C14 C21 SING Y N 12
NEF C14 C12 SING N N 13
NEF C8 C7 SING N N 14
NEF C8 C9 DOUB Y N 15
NEF C6 C12 DOUB N E 16
NEF C6 C4 SING N N 17
NEF C7 C5 SING N N 18
NEF O17 C16 DOUB N N 19
NEF C10 C9 SING Y N 20
NEF C21 N22 SING N N 21
NEF O2 C1 DOUB N N 22
NEF C4 C15 DOUB N N 23
NEF C4 C2 SING N N 24
NEF C16 C15 SING N N 25
NEF C16 O18 SING N N 26
NEF N4 C5 SING N N 27
NEF N4 C3 SING N N 28
NEF C15 N14 SING N N 29
NEF C5 O6 DOUB N N 30
NEF C1 C3 SING N N 31
NEF C2 S19 SING N N 32
NEF N22 O25 DOUB N N 33
NEF N22 O24 SING N N 34
NEF C3 C13 SING N N 35
NEF N14 C13 SING N N 36
NEF C13 S19 SING N N 37
NEF C2 H1 SING N N 38
NEF C2 H2 SING N N 39
NEF C3 H3 SING N N 40
NEF C6 H5 SING N N 41
NEF C7 H7 SING N N 42
NEF C7 H8 SING N N 43
NEF C11 H9 SING N N 44
NEF C13 H10 SING N N 45
NEF C17 H12 SING N N 46
NEF N4 H14 SING N N 47
NEF C9 H15 SING N N 48
NEF C10 H16 SING N N 49
NEF O18 H19 SING N N 50
NEF C12 H20 SING N N 51
NEF C18 H22 SING N N 52
NEF C20 H23 SING N N 53
NEF C1 OXY SING N N 54
NEF OXY HXY SING N N 55
NEF N14 H4 SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NEF InChI InChI 1.03 'InChI=1S/C21H18N4O9S2/c26-16(9-14-2-1-7-35-14)22-18(21(29)30)19-23-17(20(27)28)12(10-36-19)4-3-11-5-6-13(24(31)32)8-15(11)25(33)34/h1-8,18-19,23H,9-10H2,(H,22,26)(H,27,28)(H,29,30)/b4-3+/t18-,19+/m0/s1'
NEF InChIKey InChI 1.03 PYBZXZZHQKFSGC-CZHQAMEJSA-N
NEF SMILES_CANONICAL CACTVS 3.385 'OC(=O)[C@@H](NC(=O)Cc1sccc1)[C@@H]2NC(=C(CS2)\C=C\c3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)C(O)=O'
NEF SMILES CACTVS 3.385 'OC(=O)[CH](NC(=O)Cc1sccc1)[CH]2NC(=C(CS2)C=Cc3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)C(O)=O'
NEF SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1cc(sc1)CC(=O)N[C@@H]([C@@H]2NC(=C(CS2)/C=C/c3ccc(cc3[N+](=O)[O-])[N+](=O)[O-])C(=O)O)C(=O)O'
NEF SMILES 'OpenEye OEToolkits' 2.0.7 'c1cc(sc1)CC(=O)NC(C2NC(=C(CS2)C=Cc3ccc(cc3[N+](=O)[O-])[N+](=O)[O-])C(=O)O)C(=O)O'
#
_pdbx_chem_comp_identifier.comp_id NEF
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'(2~{R})-5-[(~{E})-2-(2,4-dinitrophenyl)ethenyl]-2-[(1~{R})-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NEF 'Create component' 2018-09-26 EBI
NEF 'Other modification' 2018-09-27 EBI
NEF 'Initial release' 2019-10-23 RCSB
NEF 'Modify leaving atom flag' 2021-08-24 PDBE
NEF 'Modify aromatic_flag' 2021-09-06 PDBE
NEF 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NEF
_pdbx_chem_comp_synonyms.name
'(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid'
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id NEF
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 6HR6
#
_pdbe_chem_comp_synonyms.comp_id NEF
_pdbe_chem_comp_synonyms.name
'(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NEF C2 C 12.093 0.090 1
NEF C3 C 14.691 -2.910 2
NEF C4 C 10.794 -0.660 3
NEF C6 C 9.495 0.090 4
NEF C7 C 18.588 -2.160 5
NEF C8 C 19.887 -2.910 6
NEF C11 C 22.262 -3.415 7
NEF C13 C 13.392 -2.160 8
NEF C14 C 8.196 2.340 9
NEF C15 C 10.794 -2.160 10
NEF C16 C 9.495 -2.910 11
NEF C17 C 6.897 1.590 12
NEF S19 S 13.392 -0.660 13
NEF C1 C 14.691 -4.410 14
NEF O2 O 15.990 -5.160 15
NEF N4 N 15.990 -2.160 16
NEF C5 C 17.290 -2.910 17
NEF O6 O 17.290 -4.410 18
NEF C9 C 20.044 -4.402 19
NEF C10 C 21.512 -4.714 20
NEF S12 S 21.258 -2.300 21
NEF N14 N 12.093 -2.910 22
NEF O17 O 9.495 -4.410 23
NEF O18 O 8.196 -2.160 24
NEF C12 C 9.495 1.590 25
NEF C18 C 5.598 2.340 26
NEF C19 C 5.598 3.840 27
NEF C20 C 6.897 4.590 28
NEF C21 C 8.196 3.840 29
NEF N22 N 9.495 4.590 30
NEF N23 N 4.299 4.590 31
NEF O24 O 10.794 3.840 32
NEF O25 O 9.495 6.090 33
NEF O26 O 3.000 3.840 34
NEF O27 O 4.299 6.090 35
NEF OXY O 13.392 -5.160 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NEF O26 N23 SINGLE NONE 1
NEF N23 O27 DOUBLE NONE 2
NEF N23 C19 SINGLE NONE 3
NEF C18 C19 SINGLE NONE 4
NEF C18 C17 DOUBLE NONE 5
NEF C19 C20 DOUBLE NONE 6
NEF C17 C14 SINGLE NONE 7
NEF S12 C11 SINGLE NONE 8
NEF S12 C8 SINGLE NONE 9
NEF C11 C10 DOUBLE NONE 10
NEF C20 C21 SINGLE NONE 11
NEF C14 C21 DOUBLE NONE 12
NEF C14 C12 SINGLE ENDDOWNRIGHT 13
NEF C8 C7 SINGLE NONE 14
NEF C8 C9 DOUBLE NONE 15
NEF C6 C12 DOUBLE NONE 16
NEF C6 C4 SINGLE ENDDOWNRIGHT 17
NEF C7 C5 SINGLE NONE 18
NEF O17 C16 DOUBLE NONE 19
NEF C10 C9 SINGLE NONE 20
NEF C21 N22 SINGLE NONE 21
NEF O2 C1 DOUBLE NONE 22
NEF C4 C15 DOUBLE NONE 23
NEF C4 C2 SINGLE NONE 24
NEF C16 C15 SINGLE NONE 25
NEF C16 O18 SINGLE NONE 26
NEF N4 C5 SINGLE NONE 27
NEF C3 N4 SINGLE BEGINDASH 28
NEF C15 N14 SINGLE NONE 29
NEF C5 O6 DOUBLE NONE 30
NEF C1 C3 SINGLE NONE 31
NEF C2 S19 SINGLE NONE 32
NEF N22 O25 DOUBLE NONE 33
NEF N22 O24 SINGLE NONE 34
NEF C3 C13 SINGLE NONE 35
NEF C13 N14 SINGLE BEGINDASH 36
NEF C13 S19 SINGLE NONE 37
NEF C1 OXY SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NEF MurckoScaffold S1 scaffold 'O=C(Cc1cccs1)NC[C@@H]1NC=C(/C=C/c2ccccc2)CS1' InChI=1S/C19H20N2OS2/c22-18(11-17-7-4-10-23-17)20-13-19-21-12-16(14-24-19)9-8-15-5-2-1-3-6-15/h1-10,12,19,21H,11,13-14H2,(H,20,22)/b9-8+/t19-/m1/s1 VPJRKGCNLDKARE-CSHXORCISA-N
NEF amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NEF peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
NEF phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NEF thiophen F4 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NEF C2 S1 1
NEF C3 S1 1
NEF C4 S1 1
NEF C6 S1 1
NEF C7 S1 1
NEF C8 S1 1
NEF C11 S1 1
NEF C13 S1 1
NEF C14 S1 1
NEF C15 S1 1
NEF C17 S1 1
NEF S19 S1 1
NEF N4 S1 1
NEF C5 S1 1
NEF O6 S1 1
NEF C9 S1 1
NEF C10 S1 1
NEF S12 S1 1
NEF N14 S1 1
NEF C12 S1 1
NEF C18 S1 1
NEF C19 S1 1
NEF C20 S1 1
NEF C21 S1 1
NEF N4 F1 1
NEF C5 F1 1
NEF O6 F1 1
NEF C7 F1 1
NEF O2 F2 1
NEF C1 F2 1
NEF C3 F2 1
NEF N4 F2 1
NEF O17 F2 2
NEF C16 F2 2
NEF C15 F2 2
NEF N14 F2 2
NEF C14 F3 1
NEF C17 F3 1
NEF C18 F3 1
NEF C19 F3 1
NEF C20 F3 1
NEF C21 F3 1
NEF C8 F4 1
NEF C9 F4 1
NEF C10 F4 1
NEF C11 F4 1
NEF S12 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NEF
_pdbe_chem_comp_rdkit_properties.exactmw 534.052
_pdbe_chem_comp_rdkit_properties.amw 534.528
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.190
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 235.939
_pdbe_chem_comp_rdkit_properties.tpsa 202.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.520
_pdbe_chem_comp_rdkit_properties.CrippenMR 128.238
_pdbe_chem_comp_rdkit_properties.chi0v 18.413
_pdbe_chem_comp_rdkit_properties.chi1v 10.292
_pdbe_chem_comp_rdkit_properties.chi2v 4.957
_pdbe_chem_comp_rdkit_properties.chi3v 4.957
_pdbe_chem_comp_rdkit_properties.chi4v 3.294
_pdbe_chem_comp_rdkit_properties.chi0n 34.780
_pdbe_chem_comp_rdkit_properties.chi1n 17.370
_pdbe_chem_comp_rdkit_properties.chi2n 3.560
_pdbe_chem_comp_rdkit_properties.chi3n 3.560
_pdbe_chem_comp_rdkit_properties.chi4n 2.141
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.240
_pdbe_chem_comp_rdkit_properties.kappa1 11.217
_pdbe_chem_comp_rdkit_properties.kappa2 11.458
_pdbe_chem_comp_rdkit_properties.kappa3 6.454
_pdbe_chem_comp_rdkit_properties.Phi 3.570
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NEF UniChem PDBe NEF
NEF UniChem PubChem 101120985
NEF UniChem BRENDA 162981
NEF UniChem BRENDA 206001
NEF UniChem BRENDA 207053
NEF UniChem BRENDA 247927
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NEF C2 -0.110 -1.366 1.283 ETKDGv3 1
NEF C3 -2.719 1.534 2.420 ETKDGv3 2
NEF C4 0.733 -0.442 0.437 ETKDGv3 3
NEF C6 1.937 -1.066 -0.159 ETKDGv3 4
NEF C7 -5.782 2.254 0.115 ETKDGv3 5
NEF C8 -6.110 0.891 -0.406 ETKDGv3 6
NEF C11 -6.976 -1.482 -0.865 ETKDGv3 7
NEF C13 -1.430 0.769 2.043 ETKDGv3 8
NEF C14 4.378 -1.233 -0.489 ETKDGv3 9
NEF C15 0.471 0.892 0.336 ETKDGv3 10
NEF C16 1.231 1.779 -0.582 ETKDGv3 11
NEF C17 5.353 -0.324 -1.133 ETKDGv3 12
NEF S19 -1.857 -0.862 1.360 ETKDGv3 13
NEF C1 -2.393 2.818 3.134 ETKDGv3 14
NEF O2 -2.140 2.801 4.368 ETKDGv3 15
NEF N4 -3.552 1.799 1.241 ETKDGv3 16
NEF C5 -4.943 2.137 1.349 ETKDGv3 17
NEF O6 -5.475 2.294 2.482 ETKDGv3 18
NEF C9 -5.370 0.202 -1.276 ETKDGv3 19
NEF C10 -5.878 -1.160 -1.545 ETKDGv3 20
NEF S12 -7.463 -0.113 0.162 ETKDGv3 21
NEF N14 -0.619 1.495 1.063 ETKDGv3 22
NEF O17 1.738 1.332 -1.646 ETKDGv3 23
NEF O18 1.342 3.135 -0.291 ETKDGv3 24
NEF C12 3.171 -0.615 0.100 ETKDGv3 25
NEF C18 6.432 -0.808 -1.755 ETKDGv3 26
NEF C19 6.679 -2.268 -1.806 ETKDGv3 27
NEF C20 5.809 -3.097 -1.199 ETKDGv3 28
NEF C21 4.616 -2.570 -0.485 ETKDGv3 29
NEF N22 3.779 -3.491 0.237 ETKDGv3 30
NEF N23 7.838 -2.778 -2.491 ETKDGv3 31
NEF O24 3.280 -3.156 1.475 ETKDGv3 32
NEF O25 3.658 -4.668 -0.161 ETKDGv3 33
NEF O26 8.718 -1.914 -3.101 ETKDGv3 34
NEF O27 8.064 -4.005 -2.546 ETKDGv3 35
NEF H1 0.312 -1.412 2.310 ETKDGv3 36
NEF H2 -0.082 -2.395 0.865 ETKDGv3 37
NEF H3 -3.294 0.887 3.121 ETKDGv3 38
NEF H5 1.804 -1.969 -0.742 ETKDGv3 39
NEF H7 -5.234 2.840 -0.655 ETKDGv3 40
NEF H8 -6.725 2.795 0.346 ETKDGv3 41
NEF H9 -7.483 -2.435 -0.931 ETKDGv3 42
NEF H10 -0.829 0.619 2.967 ETKDGv3 43
NEF H12 5.186 0.747 -1.116 ETKDGv3 44
NEF H14 -3.147 1.692 0.283 ETKDGv3 45
NEF H15 -4.469 0.595 -1.729 ETKDGv3 46
NEF H16 -5.395 -1.844 -2.231 ETKDGv3 47
NEF H19 1.841 3.761 -0.912 ETKDGv3 48
NEF H20 3.298 0.294 0.676 ETKDGv3 49
NEF H22 7.124 -0.121 -2.225 ETKDGv3 50
NEF H23 5.978 -4.166 -1.209 ETKDGv3 51
NEF OXY -2.333 4.019 2.433 ETKDGv3 52
NEF HXY -2.101 4.885 2.904 ETKDGv3 53
NEF H4 -0.860 2.489 0.847 ETKDGv3 54
#