data_NHC
#
_chem_comp.id NHC
_chem_comp.name "(1R,2S,3R,4S)-2,3-dimethyl-7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Cantharidic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-05-07
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 214.215
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NHC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3H62
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NHC O2 O2 O 0 1 N N N N N N 116.749 -2.258 31.403 -1.220 2.049 -0.867 O2 NHC 1
NHC C8 C8 C 0 1 N N N N N N 115.832 -2.273 30.551 -1.143 1.337 0.106 C8 NHC 2
NHC O4 O4 O 0 1 N N N N N N 115.770 -3.119 29.633 -2.233 1.104 0.855 O4 NHC 3
NHC C3 C3 C 0 1 N N S N N N 114.765 -1.213 30.651 0.174 0.706 0.476 C3 NHC 4
NHC C7 C7 C 0 1 N N N N N N 113.686 -1.418 29.586 0.537 1.024 1.928 C7 NHC 5
NHC C4 C4 C 0 1 N N R N N N 114.181 -1.165 32.067 0.133 -0.826 0.243 C4 NHC 6
NHC C10 C10 C 0 1 N N N N N N 112.665 -1.387 32.083 0.472 -1.579 1.532 C10 NHC 7
NHC C9 C9 C 0 1 N N N N N N 114.867 -2.140 33.003 -1.214 -1.251 -0.282 C9 NHC 8
NHC O3 O3 O 0 1 N N N N N N 115.855 -1.719 33.655 -1.938 -1.939 0.398 O3 NHC 9
NHC O5 O5 O 0 1 N N N N N N 114.455 -3.319 33.101 -1.610 -0.864 -1.505 O5 NHC 10
NHC C2 C2 C 0 1 N N R N N N 115.417 0.154 30.528 1.302 1.176 -0.491 C2 NHC 11
NHC C1 C1 C 0 1 N N N N N N 114.316 1.181 30.334 2.632 0.692 0.161 C1 NHC 12
NHC C5 C5 C 0 1 N N N N N N 113.686 1.224 31.722 2.593 -0.840 -0.076 C5 NHC 13
NHC C6 C6 C 0 1 N N S N N N 114.549 0.244 32.493 1.242 -1.042 -0.830 C6 NHC 14
NHC O1 O1 O 0 1 N N N N N N 115.810 0.429 31.862 1.156 0.216 -1.589 O1 NHC 15
NHC HO4 HO4 H 0 1 N N N N N N 116.507 -3.714 29.700 -3.056 1.528 0.576 HO4 NHC 16
NHC H7 H7 H 0 1 N N N N N N 112.699 -1.467 30.068 -0.298 0.762 2.577 H7 NHC 17
NHC H7A H7A H 0 1 N N N N N N 113.706 -0.577 28.877 1.417 0.449 2.217 H7A NHC 18
NHC H7B H7B H 0 1 N N N N N N 113.877 -2.357 29.047 0.751 2.089 2.024 H7B NHC 19
NHC H10 H10 H 0 1 N N N N N N 112.313 -1.440 33.124 -0.321 -1.424 2.263 H10 NHC 20
NHC H10A H10A H 0 0 N N N N N N 112.167 -0.551 31.570 0.565 -2.644 1.317 H10A NHC 21
NHC H10B H10B H 0 0 N N N N N N 112.427 -2.329 31.567 1.414 -1.206 1.934 H10B NHC 22
NHC HO5 HO5 H 0 1 N N N N N N 114.998 -3.794 33.719 -2.482 -1.161 -1.798 HO5 NHC 23
NHC H2 H2 H 0 1 N N N N N N 116.187 0.180 29.743 1.273 2.230 -0.766 H2 NHC 24
NHC H1 H1 H 0 1 N N N N N N 114.712 2.161 30.027 3.492 1.138 -0.338 H1 NHC 25
NHC H1A H1A H 0 1 N N N N N N 113.607 0.925 29.533 2.644 0.917 1.227 H1A NHC 26
NHC H5 H5 H 0 1 N N N N N N 113.718 2.233 32.158 3.433 -1.156 -0.694 H5 NHC 27
NHC H5A H5A H 0 1 N N N N N N 112.616 0.967 31.728 2.585 -1.377 0.872 H5A NHC 28
NHC H6 H6 H 0 1 N N N N N N 114.483 0.379 33.583 1.161 -1.963 -1.407 H6 NHC 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NHC O2 C8 DOUB N N 1
NHC C8 O4 SING N N 2
NHC C8 C3 SING N N 3
NHC C3 C7 SING N N 4
NHC C3 C4 SING N N 5
NHC C3 C2 SING N N 6
NHC C4 C10 SING N N 7
NHC C4 C9 SING N N 8
NHC C4 C6 SING N N 9
NHC C9 O3 DOUB N N 10
NHC C9 O5 SING N N 11
NHC C2 C1 SING N N 12
NHC C2 O1 SING N N 13
NHC C1 C5 SING N N 14
NHC C5 C6 SING N N 15
NHC C6 O1 SING N N 16
NHC O4 HO4 SING N N 17
NHC C7 H7 SING N N 18
NHC C7 H7A SING N N 19
NHC C7 H7B SING N N 20
NHC C10 H10 SING N N 21
NHC C10 H10A SING N N 22
NHC C10 H10B SING N N 23
NHC O5 HO5 SING N N 24
NHC C2 H2 SING N N 25
NHC C1 H1 SING N N 26
NHC C1 H1A SING N N 27
NHC C5 H5 SING N N 28
NHC C5 H5A SING N N 29
NHC C6 H6 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NHC SMILES ACDLabs 10.04 O=C(O)C1(C(C(=O)O)(C)C2OC1CC2)C
NHC SMILES_CANONICAL CACTVS 3.341 C[C@]1([C@H]2CC[C@H](O2)[C@]1(C)C(O)=O)C(O)=O
NHC SMILES CACTVS 3.341 C[C]1([CH]2CC[CH](O2)[C]1(C)C(O)=O)C(O)=O
NHC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@]1([C@H]2CC[C@@H]([C@]1(C)C(=O)O)O2)C(=O)O
NHC SMILES "OpenEye OEToolkits" 1.5.0 CC1(C2CCC(C1(C)C(=O)O)O2)C(=O)O
NHC InChI InChI 1.03 InChI=1S/C10H14O5/c1-9(7(11)12)5-3-4-6(15-5)10(9,2)8(13)14/h5-6H,3-4H2,1-2H3,(H,11,12)(H,13,14)/t5-,6+,9+,10-
NHC InChIKey InChI 1.03 NMTNUQBORQILRK-XCVPVQRUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NHC "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,2S,3R,4S)-2,3-dimethyl-7-oxabicyclo[2.2.1]heptane-2,3-dicarboxylic acid"
NHC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,4S,5R,6S)-5,6-dimethyl-7-oxabicyclo[2.2.1]heptane-5,6-dicarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NHC 'Create component' 2009-05-07 PDBJ
NHC 'Modify descriptor' 2011-06-04 RCSB
NHC 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NHC
_pdbx_chem_comp_synonyms.name "Cantharidic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id NHC
_pdbe_chem_comp_synonyms.name 'Cantharidic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NHC O2 O 2.515 0.296 1
NHC C8 C 1.758 -1.018 2
NHC O4 O 2.537 -2.276 3
NHC C3 C 0.120 -1.064 4
NHC C7 C 0.266 -2.559 5
NHC C4 C 0.118 0.453 6
NHC C10 C 1.376 0.424 7
NHC C9 C 0.367 1.938 8
NHC O3 O 1.805 2.419 9
NHC O5 O -0.745 2.924 10
NHC C2 C -1.366 -1.297 11
NHC C1 C -2.865 -1.297 12
NHC C5 C -2.867 0.680 13
NHC C6 C -1.369 0.683 14
NHC O1 O -1.652 -0.307 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NHC O2 C8 DOUBLE NONE 1
NHC C8 O4 SINGLE NONE 2
NHC C8 C3 SINGLE NONE 3
NHC C3 C7 SINGLE BEGINWEDGE 4
NHC C3 C4 SINGLE NONE 5
NHC C3 C2 SINGLE NONE 6
NHC C4 C10 SINGLE BEGINWEDGE 7
NHC C4 C9 SINGLE NONE 8
NHC C4 C6 SINGLE NONE 9
NHC C9 O3 DOUBLE NONE 10
NHC C9 O5 SINGLE NONE 11
NHC C2 C1 SINGLE NONE 12
NHC C2 O1 SINGLE NONE 13
NHC C1 C5 SINGLE NONE 14
NHC C5 C6 SINGLE NONE 15
NHC C6 O1 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NHC MurckoScaffold S1 scaffold 'C1C[C@H]2CC[C@@H]1O2' InChI=1S/C6H10O/c1-2-6-4-3-5(1)7-6/h5-6H,1-4H2/t5-,6+ YPWFNLSXQIGJCK-OLQVQODUSA-N
NHC cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NHC C3 S1 1
NHC C4 S1 1
NHC C2 S1 1
NHC C1 S1 1
NHC C5 S1 1
NHC C6 S1 1
NHC O1 S1 1
NHC C3 F1 1
NHC C4 F1 1
NHC C6 F1 1
NHC C5 F1 1
NHC C1 F1 1
NHC C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NHC
_pdbe_chem_comp_rdkit_properties.exactmw 214.084
_pdbe_chem_comp_rdkit_properties.amw 214.217
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.880
_pdbe_chem_comp_rdkit_properties.tpsa 83.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.729
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.381
_pdbe_chem_comp_rdkit_properties.chi0v 7.041
_pdbe_chem_comp_rdkit_properties.chi1v 3.725
_pdbe_chem_comp_rdkit_properties.chi2v 2.350
_pdbe_chem_comp_rdkit_properties.chi3v 2.350
_pdbe_chem_comp_rdkit_properties.chi4v 1.439
_pdbe_chem_comp_rdkit_properties.chi0n 21.041
_pdbe_chem_comp_rdkit_properties.chi1n 10.541
_pdbe_chem_comp_rdkit_properties.chi2n 2.350
_pdbe_chem_comp_rdkit_properties.chi3n 2.350
_pdbe_chem_comp_rdkit_properties.chi4n 1.439
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 2.769
_pdbe_chem_comp_rdkit_properties.kappa2 2.723
_pdbe_chem_comp_rdkit_properties.kappa3 0.916
_pdbe_chem_comp_rdkit_properties.Phi 0.503
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NHC UniChem ChEMBL CHEMBL1234720
NHC UniChem PDBe NHC
NHC UniChem ChEBI 78695
NHC UniChem ZINC ZINC000013783286
NHC UniChem 'Probes And Drugs' PD043226
NHC UniChem PubChem 121475
NHC UniChem eMolecules 26757363
NHC UniChem SureChEMBL SCHEMBL13091537
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NHC O2 -0.480 0.998 2.730 ETKDGv3 1
NHC C8 -0.703 1.376 1.547 ETKDGv3 2
NHC O4 -0.902 2.733 1.298 ETKDGv3 3
NHC C3 -0.678 0.382 0.382 ETKDGv3 4
NHC C7 -1.863 0.756 -0.550 ETKDGv3 5
NHC C4 0.742 0.291 -0.313 ETKDGv3 6
NHC C10 0.770 0.585 -1.839 ETKDGv3 7
NHC C9 1.782 1.205 0.343 ETKDGv3 8
NHC O3 1.882 2.411 -0.013 ETKDGv3 9
NHC O5 2.575 0.745 1.393 ETKDGv3 10
NHC C2 -0.780 -1.074 0.943 ETKDGv3 11
NHC C1 -1.052 -2.139 -0.129 ETKDGv3 12
NHC C5 0.311 -2.226 -0.794 ETKDGv3 13
NHC C6 1.096 -1.192 0.026 ETKDGv3 14
NHC O1 0.542 -1.357 1.300 ETKDGv3 15
NHC HO4 -0.893 3.407 2.054 ETKDGv3 16
NHC H7 -2.823 0.663 0.003 ETKDGv3 17
NHC H7A -1.764 1.804 -0.903 ETKDGv3 18
NHC H7B -1.937 0.132 -1.458 ETKDGv3 19
NHC H10 1.778 0.363 -2.249 ETKDGv3 20
NHC H10A 0.034 0.006 -2.423 ETKDGv3 21
NHC H10B 0.544 1.656 -2.031 ETKDGv3 22
NHC HO5 3.242 1.356 1.848 ETKDGv3 23
NHC H2 -1.477 -1.177 1.803 ETKDGv3 24
NHC H1 -1.292 -3.106 0.366 ETKDGv3 25
NHC H1A -1.871 -1.908 -0.835 ETKDGv3 26
NHC H5 0.748 -3.235 -0.630 ETKDGv3 27
NHC H5A 0.280 -2.045 -1.885 ETKDGv3 28
NHC H6 2.187 -1.409 0.013 ETKDGv3 29
#