data_NIL
#
_chem_comp.id NIL
_chem_comp.name Nilotinib
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C28 H22 F3 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-04-11
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.516
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NIL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CS9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NIL O17 O17 O 0 1 N N N N N N 27.437 2.895 51.243 0.831 0.031 -0.339 O17 NIL 1
NIL C16 C16 C 0 1 N N N N N N 27.116 2.668 52.384 0.987 1.217 -0.557 C16 NIL 2
NIL N14 N14 N 0 1 N N N N N N 26.013 3.098 53.015 2.227 1.743 -0.566 N14 NIL 3
NIL C11 C11 C 0 1 Y N N N N N 25.114 4.042 52.535 3.329 0.944 -0.242 C11 NIL 4
NIL C9 C9 C 0 1 Y N N N N N 24.318 4.806 53.424 3.348 -0.394 -0.609 C9 NIL 5
NIL C8 C8 C 0 1 Y N N N N N 23.418 5.765 52.951 4.442 -1.183 -0.285 C8 NIL 6
NIL N51 N51 N 0 1 Y N N N N N 22.656 6.556 53.824 4.466 -2.535 -0.656 N51 NIL 7
NIL C56 C56 C 0 1 Y N N N N N 22.314 6.313 55.153 3.487 -3.211 -1.336 C56 NIL 8
NIL C55 C55 C 0 1 Y N N N N N 21.497 7.306 55.567 3.916 -4.479 -1.480 C55 NIL 9
NIL C58 C58 C 0 1 N N N N N N 20.880 7.493 56.932 3.169 -5.592 -2.168 C58 NIL 10
NIL N54 N54 N 0 1 Y N N N N N 21.346 8.174 54.542 5.124 -4.580 -0.906 N54 NIL 11
NIL C52 C52 C 0 1 Y N N N N N 22.011 7.689 53.522 5.467 -3.421 -0.413 C52 NIL 12
NIL C6 C6 C 0 1 Y N N N N N 23.242 5.922 51.580 5.514 -0.632 0.405 C6 NIL 13
NIL C12 C12 C 0 1 Y N N N N N 24.886 4.176 51.148 4.407 1.491 0.444 C12 NIL 14
NIL C5 C5 C 0 1 Y N N N N N 23.985 5.169 50.668 5.492 0.701 0.770 C5 NIL 15
NIL C2 C2 C 0 1 N N N N N N 23.808 5.330 49.193 6.656 1.294 1.520 C2 NIL 16
NIL F4 F4 F 0 1 N N N N N N 23.725 4.177 48.500 7.588 1.801 0.607 F4 NIL 17
NIL F3 F3 F 0 1 N N N N N N 22.644 5.904 48.912 6.201 2.329 2.345 F3 NIL 18
NIL F1 F1 F 0 1 N N N N N N 24.849 5.967 48.618 7.261 0.305 2.302 F1 NIL 19
NIL C18 C18 C 0 1 Y N N N N N 27.868 1.587 53.051 -0.184 2.080 -0.818 C18 NIL 20
NIL C25 C25 C 0 1 Y N N N N N 27.514 1.002 54.276 -0.009 3.442 -1.068 C25 NIL 21
NIL C23 C23 C 0 1 Y N N N N N 28.205 -0.100 54.782 -1.104 4.246 -1.311 C23 NIL 22
NIL C22 C22 C 0 1 Y N N N N N 29.214 -0.711 54.055 -2.377 3.707 -1.308 C22 NIL 23
NIL C27 C27 C 0 1 N N N N N N 29.954 -1.917 54.616 -3.567 4.592 -1.573 C27 NIL 24
NIL C21 C21 C 0 1 Y N N N N N 29.501 -0.198 52.791 -2.563 2.352 -1.060 C21 NIL 25
NIL C19 C19 C 0 1 Y N N N N N 28.813 0.924 52.312 -1.469 1.535 -0.820 C19 NIL 26
NIL N31 N31 N 0 1 N N N N N N 30.620 -0.693 52.109 -3.853 1.812 -1.058 N31 NIL 27
NIL C33 C33 C 0 1 Y N N N N N 31.845 -0.034 52.230 -4.171 0.781 -0.189 C33 NIL 28
NIL N40 N40 N 0 1 Y N N N N N 32.157 1.011 52.986 -3.221 0.269 0.580 N40 NIL 29
NIL C38 C38 C 0 1 Y N N N N N 33.414 1.482 52.879 -3.484 -0.717 1.423 C38 NIL 30
NIL C36 C36 C 0 1 Y N N N N N 34.307 0.971 52.017 -4.772 -1.216 1.500 C36 NIL 31
NIL C35 C35 C 0 1 Y N N N N N 33.936 -0.081 51.256 -5.753 -0.655 0.677 C35 NIL 32
NIL N34 N34 N 0 1 Y N N N N N 32.708 -0.604 51.350 -5.417 0.337 -0.143 N34 NIL 33
NIL C41 C41 C 0 1 Y N N N N N 34.853 -0.762 50.305 -7.149 -1.155 0.721 C41 NIL 34
NIL C49 C49 C 0 1 Y N N N N N 36.184 -0.346 50.141 -8.130 -0.595 -0.101 C49 NIL 35
NIL C47 C47 C 0 1 Y N N N N N 36.988 -1.004 49.219 -9.418 -1.097 -0.022 C47 NIL 36
NIL C45 C45 C 0 1 Y N N N N N 36.444 -2.075 48.511 -9.690 -2.127 0.861 C45 NIL 37
NIL N44 N44 N 0 1 Y N N N N N 35.168 -2.477 48.629 -8.742 -2.635 1.625 N44 NIL 38
NIL C42 C42 C 0 1 Y N N N N N 34.400 -1.844 49.525 -7.502 -2.195 1.580 C42 NIL 39
NIL HN14 HN14 H 0 0 N N N N N N 25.820 2.703 53.913 2.357 2.676 -0.797 HN14 NIL 40
NIL H9 H9 H 0 1 N N N N N N 24.409 4.644 54.488 2.514 -0.820 -1.146 H9 NIL 41
NIL H56 H56 H 0 1 N N N N N N 22.645 5.475 55.749 2.550 -2.805 -1.688 H56 NIL 42
NIL H58 H58 H 0 1 N N N N N N 21.675 7.538 57.691 3.434 -5.608 -3.226 H58 NIL 43
NIL H58A H58A H 0 0 N N N N N N 20.303 8.430 56.948 3.437 -6.545 -1.712 H58A NIL 44
NIL H58B H58B H 0 0 N N N N N N 20.212 6.647 57.151 2.097 -5.428 -2.065 H58B NIL 45
NIL H52 H52 H 0 1 N N N N N N 22.036 8.152 52.547 6.390 -3.204 0.103 H52 NIL 46
NIL H6 H6 H 0 1 N N N N N N 22.520 6.637 51.215 6.366 -1.246 0.657 H6 NIL 47
NIL H12 H12 H 0 1 N N N N N N 25.395 3.526 50.452 4.394 2.533 0.726 H12 NIL 48
NIL H25 H25 H 0 1 N N N N N N 26.689 1.413 54.839 0.984 3.867 -1.071 H25 NIL 49
NIL H23 H23 H 0 1 N N N N N N 27.948 -0.484 55.758 -0.966 5.299 -1.504 H23 NIL 50
NIL H27 H27 H 0 1 N N N N N N 30.133 -2.645 53.811 -3.775 4.611 -2.643 H27 NIL 51
NIL H27A H27A H 0 0 N N N N N N 30.917 -1.593 55.037 -4.436 4.203 -1.041 H27A NIL 52
NIL H27B H27B H 0 0 N N N N N N 29.347 -2.385 55.405 -3.353 5.603 -1.227 H27B NIL 53
NIL H19 H19 H 0 1 N N N N N N 29.037 1.282 51.318 -1.611 0.481 -0.632 H19 NIL 54
NIL HN31 HN31 H 0 0 N N N N N N 30.542 -1.512 51.540 -4.525 2.159 -1.665 HN31 NIL 55
NIL H38 H38 H 0 1 N N N N N N 33.716 2.304 53.512 -2.702 -1.127 2.045 H38 NIL 56
NIL H36 H36 H 0 1 N N N N N N 35.298 1.391 51.934 -5.014 -2.020 2.179 H36 NIL 57
NIL H49 H49 H 0 1 N N N N N N 36.577 0.474 50.724 -7.890 0.209 -0.781 H49 NIL 58
NIL H47 H47 H 0 1 N N N N N N 38.009 -0.694 49.055 -10.202 -0.689 -0.642 H47 NIL 59
NIL H45 H45 H 0 1 N N N N N N 37.086 -2.612 47.828 -10.693 -2.520 0.925 H45 NIL 60
NIL H42 H42 H 0 1 N N N N N N 33.382 -2.180 49.656 -6.753 -2.640 2.218 H42 NIL 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NIL O17 C16 DOUB N N 1
NIL C16 N14 SING N N 2
NIL C16 C18 SING N N 3
NIL N14 C11 SING N N 4
NIL C11 C9 DOUB Y N 5
NIL C11 C12 SING Y N 6
NIL C9 C8 SING Y N 7
NIL C8 N51 SING Y N 8
NIL C8 C6 DOUB Y N 9
NIL N51 C56 SING Y N 10
NIL N51 C52 SING Y N 11
NIL C56 C55 DOUB Y N 12
NIL C55 C58 SING N N 13
NIL C55 N54 SING Y N 14
NIL N54 C52 DOUB Y N 15
NIL C6 C5 SING Y N 16
NIL C12 C5 DOUB Y N 17
NIL C5 C2 SING N N 18
NIL C2 F4 SING N N 19
NIL C2 F3 SING N N 20
NIL C2 F1 SING N N 21
NIL C18 C25 DOUB Y N 22
NIL C18 C19 SING Y N 23
NIL C25 C23 SING Y N 24
NIL C23 C22 DOUB Y N 25
NIL C22 C27 SING N N 26
NIL C22 C21 SING Y N 27
NIL C21 C19 DOUB Y N 28
NIL C21 N31 SING N N 29
NIL N31 C33 SING N N 30
NIL C33 N40 DOUB Y N 31
NIL C33 N34 SING Y N 32
NIL N40 C38 SING Y N 33
NIL C38 C36 DOUB Y N 34
NIL C36 C35 SING Y N 35
NIL C35 N34 DOUB Y N 36
NIL C35 C41 SING Y N 37
NIL C41 C49 DOUB Y N 38
NIL C41 C42 SING Y N 39
NIL C49 C47 SING Y N 40
NIL C47 C45 DOUB Y N 41
NIL C45 N44 SING Y N 42
NIL N44 C42 DOUB Y N 43
NIL N14 HN14 SING N N 44
NIL C9 H9 SING N N 45
NIL C56 H56 SING N N 46
NIL C58 H58 SING N N 47
NIL C58 H58A SING N N 48
NIL C58 H58B SING N N 49
NIL C52 H52 SING N N 50
NIL C6 H6 SING N N 51
NIL C12 H12 SING N N 52
NIL C25 H25 SING N N 53
NIL C23 H23 SING N N 54
NIL C27 H27 SING N N 55
NIL C27 H27A SING N N 56
NIL C27 H27B SING N N 57
NIL C19 H19 SING N N 58
NIL N31 HN31 SING N N 59
NIL C38 H38 SING N N 60
NIL C36 H36 SING N N 61
NIL C49 H49 SING N N 62
NIL C47 H47 SING N N 63
NIL C45 H45 SING N N 64
NIL C42 H42 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NIL SMILES ACDLabs 10.04 FC(F)(F)c1cc(cc(c1)n2cc(nc2)C)NC(=O)c5ccc(c(Nc4nc(c3cccnc3)ccn4)c5)C
NIL SMILES_CANONICAL CACTVS 3.341 Cc1cn(cn1)c2cc(NC(=O)c3ccc(C)c(Nc4nccc(n4)c5cccnc5)c3)cc(c2)C(F)(F)F
NIL SMILES CACTVS 3.341 Cc1cn(cn1)c2cc(NC(=O)c3ccc(C)c(Nc4nccc(n4)c5cccnc5)c3)cc(c2)C(F)(F)F
NIL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)Nc4cc(cc(c4)n5cc(nc5)C)C(F)(F)F
NIL SMILES "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)Nc4cc(cc(c4)n5cc(nc5)C)C(F)(F)F
NIL InChI InChI 1.03 InChI=1S/C28H22F3N7O/c1-17-5-6-19(10-25(17)37-27-33-9-7-24(36-27)20-4-3-8-32-14-20)26(39)35-22-11-21(28(29,30)31)12-23(13-22)38-15-18(2)34-16-38/h3-16H,1-2H3,(H,35,39)(H,33,36,37)
NIL InChIKey InChI 1.03 HHZIURLSWUIHRB-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NIL "SYSTEMATIC NAME" ACDLabs 10.04 4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide
NIL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-methyl-N-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NIL 'Create component' 2008-04-11 RCSB
NIL 'Modify aromatic_flag' 2011-06-04 RCSB
NIL 'Modify descriptor' 2011-06-04 RCSB
NIL 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NIL
_pdbx_chem_comp_synonyms.name
4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id NIL
_pdbe_chem_comp_drugbank_details.drugbank_id DB04868
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Nilotinib
_pdbe_chem_comp_drugbank_details.description
'Nilotinib, also known as AMN107, is a tyrosine kinase inhibitor under investigation as a possible treatment for chronic myelogenous leukemia (CML). A Phase I clinical trial in 2006 showed that this drug was relatively safe and offered significant therapeutic benefits in cases of CML which were found to be resistant to treatment with imatinib (Gleevec), another tyrosine kinase inhibitor used as a first-line treatment for CML.'
_pdbe_chem_comp_drugbank_details.cas_number 641571-10-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Chronic myelogenous leukaemia (CML) is caused by the BCR-ABL oncogene. Nilotinib inhibits the tyrosine kinase activity of the BCR-ABL protein. Nilotinib fits into the ATP-binding site of the BCR-ABL protein with higher affinity than imatinib, over-riding resistance caused by mutations. The ability of AMN107 to inhibit TEL-platelet-derived growth factor receptor-beta (TEL-PDGFRbeta), which causes chronic myelomonocytic leukaemia, and FIP1-like-1-PDGFRalpha, which causes hypereosinophilic syndrome, suggests potential use of AMN107 for myeloproliferative diseases characterised by these kinase fusions (Stover et al, 2005; Weisberg et al, 2005). AMN107 also inhibits the c-Kit receptor kinase, including the D816V-mutated variant of KIT, at pharmacologically achievable concentrations, supporting potential utility in the treatment of mastocytosis, and gastrointestinal stromal tumours (Weisberg et al, 2005; von Bubnoff et al, 2005; Gleixner et al, 2006).'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
NIL '4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide' wwPDB ?
NIL Nilotinib DrugBank ?
NIL Nilotinibum DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id NIL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04868
_pdbe_chem_comp_drugbank_classification.parent Benzanilides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as benzanilides. These are aromatic compounds containing an anilide group in which the carboxamide group is substituted with a benzene ring. They have the general structure RNC(=O)R', where R,R'= benzene."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
NIL DB04868 'Tyrosine-protein kinase ABL1' Humans P00519 yes 1
NIL DB04868 'Mast/stem cell growth factor receptor Kit' Humans P10721 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NIL O17 O 8.196 0.489 1
NIL C16 C 9.495 1.239 2
NIL N14 N 9.495 2.739 3
NIL C11 C 8.196 3.489 4
NIL C9 C 8.196 4.989 5
NIL C8 C 6.897 5.739 6
NIL N51 N 6.897 7.239 7
NIL C56 C 8.111 8.121 8
NIL C55 C 7.647 9.547 9
NIL C58 C 8.529 10.761 10
NIL N54 N 6.147 9.547 11
NIL C52 C 5.684 8.121 12
NIL C6 C 5.598 4.989 13
NIL C12 C 6.897 2.739 14
NIL C5 C 5.598 3.489 15
NIL C2 C 4.299 2.739 16
NIL F4 F 3.000 1.989 17
NIL F3 F 5.049 1.440 18
NIL F1 F 3.549 4.038 19
NIL C18 C 10.794 0.489 20
NIL C25 C 12.093 1.239 21
NIL C23 C 13.392 0.489 22
NIL C22 C 13.392 -1.011 23
NIL C27 C 14.691 -1.761 24
NIL C21 C 12.093 -1.761 25
NIL C19 C 10.794 -1.011 26
NIL N31 N 12.093 -3.261 27
NIL C33 C 10.794 -4.011 28
NIL N40 N 9.495 -3.261 29
NIL C38 C 8.196 -4.011 30
NIL C36 C 8.196 -5.511 31
NIL C35 C 9.495 -6.261 32
NIL N34 N 10.794 -5.511 33
NIL C41 C 9.495 -7.761 34
NIL C49 C 8.196 -8.511 35
NIL C47 C 8.196 -10.011 36
NIL C45 C 9.495 -10.761 37
NIL N44 N 10.794 -10.011 38
NIL C42 C 10.794 -8.511 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NIL O17 C16 DOUBLE NONE 1
NIL C16 N14 SINGLE NONE 2
NIL C16 C18 SINGLE NONE 3
NIL N14 C11 SINGLE NONE 4
NIL C11 C9 DOUBLE NONE 5
NIL C11 C12 SINGLE NONE 6
NIL C9 C8 SINGLE NONE 7
NIL C8 N51 SINGLE NONE 8
NIL C8 C6 DOUBLE NONE 9
NIL N51 C56 SINGLE NONE 10
NIL N51 C52 SINGLE NONE 11
NIL C56 C55 DOUBLE NONE 12
NIL C55 C58 SINGLE NONE 13
NIL C55 N54 SINGLE NONE 14
NIL N54 C52 DOUBLE NONE 15
NIL C6 C5 SINGLE NONE 16
NIL C12 C5 DOUBLE NONE 17
NIL C5 C2 SINGLE NONE 18
NIL C2 F4 SINGLE NONE 19
NIL C2 F3 SINGLE NONE 20
NIL C2 F1 SINGLE NONE 21
NIL C18 C25 DOUBLE NONE 22
NIL C18 C19 SINGLE NONE 23
NIL C25 C23 SINGLE NONE 24
NIL C23 C22 DOUBLE NONE 25
NIL C22 C27 SINGLE NONE 26
NIL C22 C21 SINGLE NONE 27
NIL C21 C19 DOUBLE NONE 28
NIL C21 N31 SINGLE NONE 29
NIL N31 C33 SINGLE NONE 30
NIL C33 N40 DOUBLE NONE 31
NIL C33 N34 SINGLE NONE 32
NIL N40 C38 SINGLE NONE 33
NIL C38 C36 DOUBLE NONE 34
NIL C36 C35 SINGLE NONE 35
NIL C35 N34 DOUBLE NONE 36
NIL C35 C41 SINGLE NONE 37
NIL C41 C49 DOUBLE NONE 38
NIL C41 C42 SINGLE NONE 39
NIL C49 C47 SINGLE NONE 40
NIL C47 C45 DOUBLE NONE 41
NIL C45 N44 SINGLE NONE 42
NIL N44 C42 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NIL MurckoScaffold S1 scaffold O=C(Nc1cccc(-n2ccnc2)c1)c1cccc(Nc2nccc(-c3cccnc3)n2)c1 InChI=1S/C25H19N7O/c33-24(29-21-7-2-8-22(15-21)32-13-12-27-17-32)18-4-1-6-20(14-18)30-25-28-11-9-23(31-25)19-5-3-10-26-16-19/h1-17H,(H,29,33)(H,28,30,31) SFQXXTGZPPMKGS-UHFFFAOYSA-N
NIL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NIL imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
NIL phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NIL pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
NIL pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
NIL Z54628578 F6 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NIL O17 S1 1
NIL C16 S1 1
NIL N14 S1 1
NIL C11 S1 1
NIL C9 S1 1
NIL C8 S1 1
NIL N51 S1 1
NIL C56 S1 1
NIL C55 S1 1
NIL N54 S1 1
NIL C52 S1 1
NIL C6 S1 1
NIL C12 S1 1
NIL C5 S1 1
NIL C18 S1 1
NIL C25 S1 1
NIL C23 S1 1
NIL C22 S1 1
NIL C21 S1 1
NIL C19 S1 1
NIL N31 S1 1
NIL C33 S1 1
NIL N40 S1 1
NIL C38 S1 1
NIL C36 S1 1
NIL C35 S1 1
NIL N34 S1 1
NIL C41 S1 1
NIL C49 S1 1
NIL C47 S1 1
NIL C45 S1 1
NIL N44 S1 1
NIL C42 S1 1
NIL N14 F1 1
NIL C16 F1 1
NIL O17 F1 1
NIL C18 F1 1
NIL C56 F2 1
NIL C55 F2 1
NIL N54 F2 1
NIL C52 F2 1
NIL N51 F2 1
NIL C11 F3 1
NIL C9 F3 1
NIL C8 F3 1
NIL C6 F3 1
NIL C5 F3 1
NIL C12 F3 1
NIL C18 F3 2
NIL C25 F3 2
NIL C23 F3 2
NIL C22 F3 2
NIL C21 F3 2
NIL C19 F3 2
NIL C45 F4 1
NIL C47 F4 1
NIL C49 F4 1
NIL C41 F4 1
NIL C42 F4 1
NIL N44 F4 1
NIL C36 F5 1
NIL C38 F5 1
NIL N40 F5 1
NIL C33 F5 1
NIL N34 F5 1
NIL C35 F5 1
NIL C21 F6 1
NIL N31 F6 1
NIL C33 F6 1
NIL N40 F6 1
NIL C38 F6 1
NIL C36 F6 1
NIL C35 F6 1
NIL N34 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NIL
_pdbe_chem_comp_rdkit_properties.exactmw 529.184
_pdbe_chem_comp_rdkit_properties.amw 529.526
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.107
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.201
_pdbe_chem_comp_rdkit_properties.tpsa 97.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.425
_pdbe_chem_comp_rdkit_properties.CrippenMR 135.462
_pdbe_chem_comp_rdkit_properties.chi0v 18.673
_pdbe_chem_comp_rdkit_properties.chi1v 10.125
_pdbe_chem_comp_rdkit_properties.chi2v 4.388
_pdbe_chem_comp_rdkit_properties.chi3v 4.388
_pdbe_chem_comp_rdkit_properties.chi4v 2.753
_pdbe_chem_comp_rdkit_properties.chi0n 40.673
_pdbe_chem_comp_rdkit_properties.chi1n 21.020
_pdbe_chem_comp_rdkit_properties.chi2n 4.388
_pdbe_chem_comp_rdkit_properties.chi3n 4.388
_pdbe_chem_comp_rdkit_properties.chi4n 2.753
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.060
_pdbe_chem_comp_rdkit_properties.kappa1 10.250
_pdbe_chem_comp_rdkit_properties.kappa2 10.365
_pdbe_chem_comp_rdkit_properties.kappa3 5.927
_pdbe_chem_comp_rdkit_properties.Phi 2.724
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NIL UniChem ChEMBL CHEMBL255863
NIL UniChem DrugBank DB04868
NIL UniChem PDBe NIL
NIL UniChem 'Guide to Pharmacology' 5697
NIL UniChem ChEBI 52172
NIL UniChem ZINC ZINC000006716957
NIL UniChem atlas Nilotinib
NIL UniChem fdasrs F41401512X
NIL UniChem PharmGKB PA165958345
NIL UniChem HMDB HMDB0015595
NIL UniChem Selleck Nilotinib
NIL UniChem 'PubChem TPHARMA' 16505655
NIL UniChem LINCS LSM-1099
NIL UniChem 'EPA CompTox Dashboard' DTXSID5042663
NIL UniChem DrugCentral 1932
NIL UniChem BRENDA 135566
NIL UniChem BRENDA 24447
NIL UniChem ChemicalBook CB5966228
NIL UniChem DailyMed NILOTINIB
NIL UniChem ClinicalTrials 'AMN 107'
NIL UniChem ClinicalTrials AMN-107
NIL UniChem ClinicalTrials AMN107
NIL UniChem ClinicalTrials NILOTINIB
NIL UniChem ClinicalTrials 'NILOTINIB HYDROCHLORIDE HYDRATE'
NIL UniChem ClinicalTrials 'NILOTINIB HYDROCHLORIDE MONOHYDRATE'
NIL UniChem ClinicalTrials TASIGNA
NIL UniChem rxnorm NILOTINIB
NIL UniChem rxnorm 'NILOTINIB HYDROCHLORIDE'
NIL UniChem rxnorm TASIGNA
NIL UniChem MedChemExpress HY-10159
NIL UniChem 'Probes And Drugs' PD003312
NIL UniChem BindingDb 50237710
NIL UniChem eMolecules 10645209
NIL UniChem SureChEMBL SCHEMBL7901
NIL UniChem PubChem 644241
NIL UniChem ACTor 641571-10-0
NIL UniChem Nikkaji J2.203.300J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NIL O17 0.709 -0.091 -0.956 ETKDGv3 1
NIL C16 0.978 0.727 -0.035 ETKDGv3 2
NIL N14 2.297 0.748 0.536 ETKDGv3 3
NIL C11 3.463 0.258 -0.149 ETKDGv3 4
NIL C9 4.491 -0.237 0.560 ETKDGv3 5
NIL C8 5.711 -0.743 -0.117 ETKDGv3 6
NIL N51 6.783 -1.318 0.654 ETKDGv3 7
NIL C56 8.139 -1.521 0.273 ETKDGv3 8
NIL C55 8.783 -2.040 1.305 ETKDGv3 9
NIL C58 10.248 -2.323 1.353 ETKDGv3 10
NIL N54 7.908 -2.188 2.422 ETKDGv3 11
NIL C52 6.757 -1.762 2.009 ETKDGv3 12
NIL C6 5.791 -0.669 -1.458 ETKDGv3 13
NIL C12 3.577 0.346 -1.626 ETKDGv3 14
NIL C5 4.690 -0.072 -2.255 ETKDGv3 15
NIL C2 4.781 -0.014 -3.760 ETKDGv3 16
NIL F4 6.099 -0.075 -4.177 ETKDGv3 17
NIL F3 4.232 1.166 -4.232 ETKDGv3 18
NIL F1 4.089 -1.082 -4.300 ETKDGv3 19
NIL C18 -0.092 1.615 0.481 ETKDGv3 20
NIL C25 0.198 2.728 1.177 ETKDGv3 21
NIL C23 -0.880 3.606 1.670 ETKDGv3 22
NIL C22 -2.169 3.304 1.441 ETKDGv3 23
NIL C27 -3.257 4.210 1.948 ETKDGv3 24
NIL C21 -2.507 2.081 0.657 ETKDGv3 25
NIL C19 -1.515 1.297 0.195 ETKDGv3 26
NIL N31 -3.879 1.786 0.339 ETKDGv3 27
NIL C33 -4.452 0.471 0.396 ETKDGv3 28
NIL N40 -3.799 -0.520 0.933 ETKDGv3 29
NIL C38 -4.379 -1.829 1.017 ETKDGv3 30
NIL C36 -5.610 -2.047 0.547 ETKDGv3 31
NIL C35 -6.352 -0.914 -0.061 ETKDGv3 32
NIL N34 -5.782 0.257 -0.106 ETKDGv3 33
NIL C41 -7.729 -1.072 -0.595 ETKDGv3 34
NIL C49 -8.196 -2.259 -1.026 ETKDGv3 35
NIL C47 -9.567 -2.369 -1.561 ETKDGv3 36
NIL C45 -10.338 -1.279 -1.621 ETKDGv3 37
NIL N44 -9.831 -0.014 -1.169 ETKDGv3 38
NIL C42 -8.626 0.110 -0.692 ETKDGv3 39
NIL HN14 2.396 1.037 1.535 ETKDGv3 40
NIL H9 4.423 -0.269 1.639 ETKDGv3 41
NIL H56 8.577 -1.256 -0.680 ETKDGv3 42
NIL H58 10.801 -1.381 1.547 ETKDGv3 43
NIL H58A 10.464 -3.047 2.166 ETKDGv3 44
NIL H58B 10.586 -2.757 0.388 ETKDGv3 45
NIL H52 5.877 -1.762 2.638 ETKDGv3 46
NIL H6 6.658 -1.061 -1.973 ETKDGv3 47
NIL H12 2.764 0.774 -2.198 ETKDGv3 48
NIL H25 1.222 3.019 1.372 ETKDGv3 49
NIL H23 -0.610 4.498 2.222 ETKDGv3 50
NIL H27 -3.671 4.799 1.103 ETKDGv3 51
NIL H27A -4.070 3.607 2.406 ETKDGv3 52
NIL H27B -2.880 4.913 2.722 ETKDGv3 53
NIL H19 -1.750 0.434 -0.415 ETKDGv3 54
NIL HN31 -4.521 2.580 0.120 ETKDGv3 55
NIL H38 -3.821 -2.635 1.475 ETKDGv3 56
NIL H36 -6.051 -3.029 0.645 ETKDGv3 57
NIL H49 -7.579 -3.147 -1.020 ETKDGv3 58
NIL H47 -9.942 -3.324 -1.904 ETKDGv3 59
NIL H45 -11.345 -1.346 -2.012 ETKDGv3 60
NIL H42 -8.289 1.083 -0.359 ETKDGv3 61
#