data_NJP
#
_chem_comp.id NJP
_chem_comp.name "5-hydroxy-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H29 N7 O18 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 5-hydroxy-NADP
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2010-02-12
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 760.412
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NJP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3L77
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NJP O3 O3 O 0 1 N N N N N N -37.498 -17.541 -16.499 1.159 -2.720 0.588 O3 NJP 1
NJP PA PA P 0 1 N N N N N N -37.872 -18.884 -17.318 -0.116 -2.823 1.566 PA NJP 2
NJP PN PN P 0 1 N N N N N N -36.670 -16.240 -16.985 2.638 -3.355 0.608 PN NJP 3
NJP N1A N1A N 0 1 Y N N N N N -29.863 -25.699 -14.815 -8.360 1.410 -3.724 N1A NJP 4
NJP O1A O1A O 0 1 N N N N N N -38.453 -19.804 -16.269 -0.826 -4.255 1.373 O1A NJP 5
NJP C1B C1B C 0 1 N N R N N N -33.137 -22.365 -16.837 -4.736 0.343 -0.159 C1B NJP 6
NJP C1D C1D C 0 1 N N R N N N -34.507 -13.777 -13.525 6.751 0.290 -1.323 C1D NJP 7
NJP N1N N1N N 1 1 Y N N N N N -35.628 -12.829 -13.449 7.045 1.423 -0.442 N1N NJP 8
NJP O1N O1N O 0 1 N N N N N N -36.189 -16.373 -18.412 3.161 -3.343 1.993 O1N NJP 9
NJP O1X O1X O 0 1 N N N N N N -34.335 -26.011 -19.789 -8.199 1.782 0.527 O1X NJP 10
NJP C2A C2A C 0 1 Y N N N N N -29.782 -25.061 -15.989 -7.668 2.248 -2.973 C2A NJP 11
NJP O2A O2A O 0 1 N N N N N N -38.670 -18.580 -18.562 0.327 -2.677 2.970 O2A NJP 12
NJP C2B C2B C 0 1 N N R N N N -34.321 -22.915 -17.631 -5.426 0.514 1.213 C2B NJP 13
NJP O2B O2B O 0 1 N N N N N N -33.929 -23.944 -18.539 -5.833 1.871 1.403 O2B NJP 14
NJP P2B P2B P 0 1 N N N N N N -34.256 -25.524 -18.359 -7.367 2.301 1.636 P2B NJP 15
NJP C2D C2D C 0 1 N N R N N N -34.683 -15.207 -13.027 7.864 -0.783 -1.222 C2D NJP 16
NJP O2D O2D O 0 1 N N N N N N -34.508 -15.296 -11.603 8.937 -0.492 -2.119 O2D NJP 17
NJP C2N C2N C 0 1 Y N N N N N -36.899 -13.170 -13.980 7.565 2.516 -0.960 C2N NJP 18
NJP O2N O2N O 0 1 N N N N N N -37.509 -15.042 -16.609 2.579 -4.872 0.070 O2N NJP 19
NJP O2X O2X O 0 1 N N N N N N -35.547 -25.681 -17.576 -7.473 3.907 1.680 O2X NJP 20
NJP N3A N3A N 0 1 Y N N N N N -30.747 -24.203 -16.358 -6.771 1.840 -2.101 N3A NJP 21
NJP C3B C3B C 0 1 N N R N N N -34.755 -21.687 -18.404 -4.333 0.126 2.234 C3B NJP 22
NJP O3B O3B O 0 1 N N N N N N -34.010 -21.628 -19.634 -4.030 1.232 3.087 O3B NJP 23
NJP C3D C3D C 0 1 N N S N N N -33.598 -15.923 -13.832 7.116 -2.068 -1.654 C3D NJP 24
NJP O3D O3D O 0 1 N N N N N N -32.311 -15.792 -13.209 7.362 -2.350 -3.033 O3D NJP 25
NJP C3N C3N C 0 1 Y N N N N N -38.008 -12.382 -13.691 7.859 3.616 -0.152 C3N NJP 26
NJP O3X O3X O 0 1 N N N N N N -33.046 -26.020 -17.608 -7.890 1.690 3.030 O3X NJP 27
NJP C4A C4A C 0 1 Y N N N N N -31.809 -23.980 -15.536 -6.524 0.544 -1.939 C4A NJP 28
NJP C4B C4B C 0 1 N N R N N N -34.348 -20.523 -17.508 -3.112 -0.233 1.358 C4B NJP 29
NJP O4B O4B O 0 1 N N N N N N -33.459 -21.024 -16.509 -3.671 -0.603 0.079 O4B NJP 30
NJP C4D C4D C 0 1 N N R N N N -33.535 -15.153 -15.151 5.628 -1.733 -1.430 C4D NJP 31
NJP O4D O4D O 0 1 N N N N N N -34.264 -13.939 -14.924 5.568 -0.407 -0.877 O4D NJP 32
NJP C4N C4N C 0 1 Y N N N N N -37.898 -11.317 -12.794 7.592 3.540 1.219 C4N NJP 33
NJP C5A C5A C 0 1 Y N N N N N -31.910 -24.632 -14.317 -7.235 -0.389 -2.714 C5A NJP 34
NJP C5B C5B C 0 1 N N N N N N -35.548 -19.944 -16.788 -2.349 -1.411 1.967 C5B NJP 35
NJP O5B O5B O 0 1 N N N N N N -36.444 -19.458 -17.776 -1.162 -1.653 1.208 O5B NJP 36
NJP C5D C5D C 0 1 N N N N N N -34.112 -15.914 -16.342 5.011 -2.734 -0.451 C5D NJP 37
NJP O5D O5D O 0 1 N N N N N N -35.413 -16.387 -15.994 3.608 -2.487 -0.339 O5D NJP 38
NJP C5N C5N C 0 1 Y N N N N N -36.674 -11.011 -12.210 7.042 2.366 1.717 C5N NJP 39
NJP C6A C6A C 0 1 Y N N N N N -30.908 -25.522 -13.964 -8.182 0.096 -3.632 C6A NJP 40
NJP N6A N6A N 0 1 N N N N N N -30.977 -26.190 -12.782 -8.911 -0.775 -4.422 N6A NJP 41
NJP C6N C6N C 0 1 Y N N N N N -35.547 -11.799 -12.476 6.775 1.320 0.845 C6N NJP 42
NJP N7A N7A N 0 1 Y N N N N N -33.058 -24.225 -13.724 -6.797 -1.620 -2.357 N7A NJP 43
NJP C7N C7N C 0 1 N N N N N N -39.345 -12.637 -14.322 8.444 4.842 -0.737 C7N NJP 44
NJP N7N N7N N 0 1 N N N N N N -39.430 -13.419 -15.397 8.724 5.898 0.053 N7N NJP 45
NJP O7N O7N O 0 1 N N N N N N -40.328 -12.066 -13.874 8.673 4.897 -1.929 O7N NJP 46
NJP C8A C8A C 0 1 Y N N N N N -33.655 -23.337 -14.555 -5.886 -1.505 -1.435 C8A NJP 47
NJP O8N O8N O 0 1 N N N N N N -36.614 -9.966 -11.338 6.765 2.245 3.042 O8N NJP 48
NJP N9A N9A N 0 1 Y N N N N N -32.885 -23.205 -15.654 -5.682 -0.190 -1.143 N9A NJP 49
NJP HO1A HO1A H 0 0 N N N N N N -39.313 -20.098 -16.546 -1.142 -4.420 0.474 HO1A NJP 50
NJP H1B H1B H 0 1 N N N N N N -32.202 -22.383 -17.417 -4.329 1.294 -0.502 H1B NJP 51
NJP H1D H1D H 0 1 N N N N N N -33.739 -13.336 -12.873 6.634 0.627 -2.354 H1D NJP 52
NJP H2A H2A H 0 1 N N N N N N -28.939 -25.237 -16.641 -7.845 3.308 -3.080 H2A NJP 53
NJP H2B H2B H 0 1 N N N N N N -35.094 -23.371 -16.995 -6.282 -0.156 1.296 H2B NJP 54
NJP H2D H2D H 0 1 N N N N N N -35.684 -15.638 -13.172 8.228 -0.871 -0.198 H2D NJP 55
NJP HO2D HO2D H 0 0 N N N N N N -34.624 -16.197 -11.325 9.658 -1.135 -2.092 HO2D NJP 56
NJP H2N H2N H 0 1 N N N N N N -37.005 -14.042 -14.609 7.767 2.562 -2.019 H2N NJP 57
NJP HO2N HO2N H 0 0 N N N N N N -37.633 -14.490 -17.372 2.245 -4.956 -0.833 HO2N NJP 58
NJP HO2X HO2X H 0 0 N N N N N N -36.210 -26.071 -18.133 -8.371 4.238 1.818 HO2X NJP 59
NJP H3B H3B H 0 1 N N N N N N -35.828 -21.681 -18.648 -4.648 -0.736 2.822 H3B NJP 60
NJP HO3B HO3B H 0 0 N N N N N N -34.274 -20.861 -20.128 -3.349 1.044 3.747 HO3B NJP 61
NJP H3D H3D H 0 1 N N N N N N -33.828 -16.994 -13.930 7.417 -2.912 -1.034 H3D NJP 62
NJP HO3D HO3D H 0 0 N N N N N N -31.659 -16.245 -13.730 8.293 -2.511 -3.242 HO3D NJP 63
NJP HO3X HO3X H 0 0 N N N N N N -32.523 -26.571 -18.178 -7.390 1.987 3.802 HO3X NJP 64
NJP H4B H4B H 0 1 N N N N N N -33.884 -19.745 -18.132 -2.454 0.630 1.252 H4B NJP 65
NJP H4D H4D H 0 1 N N N N N N -32.484 -14.977 -15.424 5.095 -1.763 -2.380 H4D NJP 66
NJP H4N H4N H 0 1 N N N N N N -38.770 -10.727 -12.552 7.807 4.373 1.873 H4N NJP 67
NJP H5B H5B H 0 1 N N N N N N -36.037 -20.721 -16.182 -2.080 -1.177 2.997 H5B NJP 68
NJP H5BA H5BA H 0 0 N N N N N N -35.233 -19.124 -16.126 -2.979 -2.301 1.949 H5BA NJP 69
NJP H5D H5D H 0 1 N N N N N N -34.180 -15.245 -17.213 5.174 -3.747 -0.818 H5D NJP 70
NJP H5DA H5DA H 0 0 N N N N N N -33.461 -16.765 -16.590 5.479 -2.622 0.527 H5DA NJP 71
NJP HN6A HN6A H 0 0 N N N N N N -30.175 -26.779 -12.684 -9.562 -0.428 -5.052 HN6A NJP 72
NJP HN6B HN6B H 0 0 N N N N N N -31.001 -25.533 -12.029 -8.772 -1.732 -4.346 HN6B NJP 73
NJP H6N H6N H 0 1 N N N N N N -34.623 -11.624 -11.945 6.344 0.406 1.226 H6N NJP 74
NJP HN7N HN7N H 0 0 N N N N N N -40.310 -13.548 -15.853 8.541 5.854 1.005 HN7N NJP 75
NJP HN7A HN7A H 0 0 N N N N N N -38.613 -13.877 -15.748 9.108 6.702 -0.331 HN7A NJP 76
NJP H8A H8A H 0 1 N N N N N N -34.587 -22.824 -14.369 -5.368 -2.331 -0.970 H8A NJP 77
NJP HO8N HO8N H 0 0 N N N N N N -35.725 -9.871 -11.018 5.873 2.530 3.285 HO8N NJP 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NJP PA O3 SING N N 1
NJP PA O1A SING N N 2
NJP PN O3 SING N N 3
NJP PN O2N SING N N 4
NJP PN O5D SING N N 5
NJP N1A C6A SING Y N 6
NJP O1A HO1A SING N N 7
NJP C1B O4B SING N N 8
NJP C1B N9A SING N N 9
NJP C1B H1B SING N N 10
NJP C1D N1N SING N N 11
NJP C1D C2D SING N N 12
NJP C1D H1D SING N N 13
NJP N1N C6N SING Y N 14
NJP O1N PN DOUB N N 15
NJP O1X P2B DOUB N N 16
NJP C2A N1A DOUB Y N 17
NJP C2A H2A SING N N 18
NJP O2A PA DOUB N N 19
NJP C2B C1B SING N N 20
NJP C2B H2B SING N N 21
NJP O2B C2B SING N N 22
NJP O2B P2B SING N N 23
NJP P2B O3X SING N N 24
NJP P2B O2X SING N N 25
NJP C2D O2D SING N N 26
NJP C2D H2D SING N N 27
NJP O2D HO2D SING N N 28
NJP C2N N1N DOUB Y N 29
NJP C2N C3N SING Y N 30
NJP C2N H2N SING N N 31
NJP O2N HO2N SING N N 32
NJP O2X HO2X SING N N 33
NJP N3A C2A SING Y N 34
NJP N3A C4A DOUB Y N 35
NJP C3B C2B SING N N 36
NJP C3B C4B SING N N 37
NJP C3B H3B SING N N 38
NJP O3B C3B SING N N 39
NJP O3B HO3B SING N N 40
NJP C3D C2D SING N N 41
NJP C3D O3D SING N N 42
NJP C3D H3D SING N N 43
NJP O3D HO3D SING N N 44
NJP C3N C4N DOUB Y N 45
NJP O3X HO3X SING N N 46
NJP C4A C5A SING Y N 47
NJP C4B C5B SING N N 48
NJP C4B O4B SING N N 49
NJP C4B H4B SING N N 50
NJP C4D C3D SING N N 51
NJP C4D O4D SING N N 52
NJP C4D H4D SING N N 53
NJP O4D C1D SING N N 54
NJP C4N C5N SING Y N 55
NJP C4N H4N SING N N 56
NJP C5A C6A DOUB Y N 57
NJP C5A N7A SING Y N 58
NJP C5B H5B SING N N 59
NJP C5B H5BA SING N N 60
NJP O5B PA SING N N 61
NJP O5B C5B SING N N 62
NJP C5D C4D SING N N 63
NJP C5D O5D SING N N 64
NJP C5D H5D SING N N 65
NJP C5D H5DA SING N N 66
NJP C5N O8N SING N N 67
NJP C6A N6A SING N N 68
NJP N6A HN6A SING N N 69
NJP N6A HN6B SING N N 70
NJP C6N C5N DOUB Y N 71
NJP C6N H6N SING N N 72
NJP C7N C3N SING N N 73
NJP C7N O7N DOUB N N 74
NJP N7N C7N SING N N 75
NJP N7N HN7N SING N N 76
NJP N7N HN7A SING N N 77
NJP C8A N7A DOUB Y N 78
NJP C8A H8A SING N N 79
NJP O8N HO8N SING N N 80
NJP N9A C4A SING Y N 81
NJP N9A C8A SING Y N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NJP SMILES_CANONICAL CACTVS 3.352 NC(=O)c1cc(O)c[n+](c1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
NJP SMILES CACTVS 3.352 NC(=O)c1cc(O)c[n+](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
NJP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1c(c[n+](cc1O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
NJP SMILES "OpenEye OEToolkits" 1.7.0 c1c(c[n+](cc1O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
NJP InChI InChI 1.03 InChI=1S/C21H28N7O18P3/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(45-47(34,35)36)14(31)11(44-21)5-42-49(39,40)46-48(37,38)41-4-10-13(30)15(32)20(43-10)27-2-8(18(23)33)1-9(29)3-27/h1-3,6-7,10-11,13-16,20-21,30-32H,4-5H2,(H8-,22,23,24,25,29,33,34,35,36,37,38,39,40)/p+1/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
NJP InChIKey InChI 1.03 PDVSLSLEJOIQNF-NNYOXOHSSA-O
#
_pdbx_chem_comp_identifier.comp_id NJP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
"[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-5-hydroxy-pyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NJP 'Create component' 2010-02-12 RCSB
NJP 'Modify descriptor' 2011-06-04 RCSB
NJP 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NJP
_pdbx_chem_comp_synonyms.name 5-hydroxy-NADP
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id NJP
_pdbe_chem_comp_synonyms.name 5-hydroxy-NADP
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NJP O3 O 15.521 1.224 1
NJP PA P 15.982 -0.203 2
NJP PN P 14.054 1.539 3
NJP N1A N 13.883 -9.182 4
NJP O1A O 14.555 -0.664 5
NJP C1B C 18.367 -5.799 6
NJP C1D C 8.560 4.812 7
NJP N1N N 7.558 5.929 8
NJP O1N O 13.740 0.072 9
NJP O1X O 23.749 -5.006 10
NJP C2A C 13.883 -7.682 11
NJP O2A O 17.409 0.258 12
NJP C2B C 19.794 -5.338 13
NJP O2B O 21.006 -6.222 14
NJP P2B P 22.377 -5.614 15
NJP C2D C 8.246 3.345 16
NJP O2D O 6.874 2.738 17
NJP C2N C 8.024 7.354 18
NJP O2N O 14.369 3.006 19
NJP O2X O 21.770 -4.243 20
NJP N3A N 15.182 -6.932 21
NJP C3B C 19.797 -3.838 22
NJP O3B O 21.012 -2.959 23
NJP C3D C 9.543 2.593 24
NJP O3D O 9.698 1.101 25
NJP C3N C 7.023 8.471 26
NJP O3X O 22.985 -6.986 27
NJP C4A C 16.481 -7.682 28
NJP C4B C 18.371 -3.372 29
NJP O4B O 17.487 -4.584 30
NJP C4D C 10.660 3.595 31
NJP O4D O 10.052 4.966 32
NJP C4N C 5.555 8.162 33
NJP C5A C 16.481 -9.182 34
NJP C5B C 17.910 -1.945 35
NJP O5B O 16.443 -1.630 36
NJP C5D C 12.127 3.281 37
NJP O5D O 12.588 1.853 38
NJP C5N C 5.089 6.736 39
NJP C6A C 15.182 -9.932 40
NJP N6A N 15.182 -11.432 41
NJP C6N C 6.091 5.619 42
NJP N7A N 17.901 -9.639 43
NJP C7N C 7.489 9.897 44
NJP N7N N 6.487 11.013 45
NJP O7N O 8.956 10.206 46
NJP C8A C 18.776 -8.432 47
NJP O8N O 3.621 6.426 48
NJP N9A N 17.901 -7.225 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NJP PA O3 SINGLE NONE 1
NJP PA O1A SINGLE BEGINDASH 2
NJP PN O3 SINGLE NONE 3
NJP PN O2N SINGLE BEGINWEDGE 4
NJP PN O5D SINGLE NONE 5
NJP N1A C6A DOUBLE NONE 6
NJP C1B O4B SINGLE NONE 7
NJP C1B N9A SINGLE BEGINDASH 8
NJP C1D N1N SINGLE BEGINDASH 9
NJP C1D C2D SINGLE NONE 10
NJP N1N C6N SINGLE NONE 11
NJP O1N PN DOUBLE NONE 12
NJP O1X P2B DOUBLE NONE 13
NJP C2A N1A SINGLE NONE 14
NJP O2A PA DOUBLE NONE 15
NJP C2B C1B SINGLE NONE 16
NJP C2B O2B SINGLE BEGINWEDGE 17
NJP O2B P2B SINGLE NONE 18
NJP P2B O3X SINGLE NONE 19
NJP P2B O2X SINGLE NONE 20
NJP C2D O2D SINGLE BEGINWEDGE 21
NJP C2N N1N DOUBLE NONE 22
NJP C2N C3N SINGLE NONE 23
NJP N3A C2A DOUBLE NONE 24
NJP N3A C4A SINGLE NONE 25
NJP C3B C2B SINGLE NONE 26
NJP C3B C4B SINGLE NONE 27
NJP C3B O3B SINGLE BEGINWEDGE 28
NJP C3D C2D SINGLE NONE 29
NJP C3D O3D SINGLE BEGINWEDGE 30
NJP C3N C4N DOUBLE NONE 31
NJP C4A C5A DOUBLE NONE 32
NJP C4B C5B SINGLE BEGINDASH 33
NJP C4B O4B SINGLE NONE 34
NJP C4D C3D SINGLE NONE 35
NJP C4D O4D SINGLE NONE 36
NJP O4D C1D SINGLE NONE 37
NJP C4N C5N SINGLE NONE 38
NJP C5A C6A SINGLE NONE 39
NJP C5A N7A SINGLE NONE 40
NJP O5B PA SINGLE NONE 41
NJP O5B C5B SINGLE NONE 42
NJP C4D C5D SINGLE BEGINDASH 43
NJP C5D O5D SINGLE NONE 44
NJP C5N O8N SINGLE NONE 45
NJP C6A N6A SINGLE NONE 46
NJP C6N C5N DOUBLE NONE 47
NJP C7N C3N SINGLE NONE 48
NJP C7N O7N DOUBLE NONE 49
NJP N7N C7N SINGLE NONE 50
NJP C8A N7A DOUBLE NONE 51
NJP N9A C4A SINGLE NONE 52
NJP N9A C8A SINGLE NONE 53
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NJP MurckoScaffold S1 scaffold 'O=[PH](OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1)O[PH](=O)OC[C@@H]1CC[C@H]([n+]2ccccc2)O1' InChI=1S/C20H26N5O7P2/c26-33(28-11-15-4-6-18(30-15)24-8-2-1-3-9-24)32-34(27)29-12-16-5-7-19(31-16)25-14-23-17-10-21-13-22-20(17)25/h1-3,8-10,13-16,18-19,33-34H,4-7,11-12H2/q+1/t15-,16-,18+,19+/m0/s1 NEQSZHPXWRKWHT-RNIPGJKVSA-N
NJP adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
NJP amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NJP imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
NJP phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
NJP purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
NJP pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
NJP pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
NJP ribose F8 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NJP O3 S1 1
NJP PA S1 1
NJP PN S1 1
NJP N1A S1 1
NJP C1B S1 1
NJP C1D S1 1
NJP N1N S1 1
NJP O1N S1 1
NJP C2A S1 1
NJP O2A S1 1
NJP C2B S1 1
NJP C2D S1 1
NJP C2N S1 1
NJP N3A S1 1
NJP C3B S1 1
NJP C3D S1 1
NJP C3N S1 1
NJP C4A S1 1
NJP C4B S1 1
NJP O4B S1 1
NJP C4D S1 1
NJP O4D S1 1
NJP C4N S1 1
NJP C5A S1 1
NJP C5B S1 1
NJP O5B S1 1
NJP C5D S1 1
NJP O5D S1 1
NJP C5N S1 1
NJP C6A S1 1
NJP C6N S1 1
NJP N7A S1 1
NJP C8A S1 1
NJP N9A S1 1
NJP N1A F1 1
NJP C6A F1 1
NJP C5A F1 1
NJP C4A F1 1
NJP N3A F1 1
NJP C2A F1 1
NJP N9A F1 1
NJP C8A F1 1
NJP N7A F1 1
NJP N6A F1 1
NJP N7N F2 1
NJP C7N F2 1
NJP O7N F2 1
NJP C3N F2 1
NJP C4A F3 1
NJP C5A F3 1
NJP N7A F3 1
NJP C8A F3 1
NJP N9A F3 1
NJP O3 F4 1
NJP PA F4 1
NJP O2A F4 1
NJP O1A F4 1
NJP O5B F4 1
NJP O3 F4 2
NJP PN F4 2
NJP O1N F4 2
NJP O2N F4 2
NJP O5D F4 2
NJP O2B F4 3
NJP P2B F4 3
NJP O1X F4 3
NJP O3X F4 3
NJP O2X F4 3
NJP N7A F5 1
NJP C8A F5 1
NJP N9A F5 1
NJP C4A F5 1
NJP C5A F5 1
NJP C6A F5 1
NJP N1A F5 1
NJP C2A F5 1
NJP N3A F5 1
NJP C2N F6 1
NJP C3N F6 1
NJP C4N F6 1
NJP C5N F6 1
NJP C6N F6 1
NJP N1N F6 1
NJP C5A F7 1
NJP C4A F7 1
NJP N3A F7 1
NJP C2A F7 1
NJP N1A F7 1
NJP C6A F7 1
NJP C2B F8 1
NJP C3B F8 1
NJP C4B F8 1
NJP O4B F8 1
NJP C1B F8 1
NJP C5B F8 1
NJP O5B F8 1
NJP O3B F8 1
NJP O2B F8 1
NJP C2D F8 2
NJP C3D F8 2
NJP C4D F8 2
NJP O4D F8 2
NJP C1D F8 2
NJP C5D F8 2
NJP O5D F8 2
NJP O3D F8 2
NJP O2D F8 2
#
_pdbe_chem_comp_rdkit_properties.comp_id NJP
_pdbe_chem_comp_rdkit_properties.exactmw 760.078
_pdbe_chem_comp_rdkit_properties.amw 760.416
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 25
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 12
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 23
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 49
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 28
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.476
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 313.876
_pdbe_chem_comp_rdkit_properties.tpsa 385.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.519
_pdbe_chem_comp_rdkit_properties.CrippenMR 148.046
_pdbe_chem_comp_rdkit_properties.chi0v 25.004
_pdbe_chem_comp_rdkit_properties.chi1v 15.903
_pdbe_chem_comp_rdkit_properties.chi2v 7.655
_pdbe_chem_comp_rdkit_properties.chi3v 7.655
_pdbe_chem_comp_rdkit_properties.chi4v 5.255
_pdbe_chem_comp_rdkit_properties.chi0n 51.321
_pdbe_chem_comp_rdkit_properties.chi1n 25.076
_pdbe_chem_comp_rdkit_properties.chi2n 5.019
_pdbe_chem_comp_rdkit_properties.chi3n 5.019
_pdbe_chem_comp_rdkit_properties.chi4n 3.235
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.060
_pdbe_chem_comp_rdkit_properties.kappa1 14.889
_pdbe_chem_comp_rdkit_properties.kappa2 13.924
_pdbe_chem_comp_rdkit_properties.kappa3 8.465
_pdbe_chem_comp_rdkit_properties.Phi 4.231
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NJP UniChem PDBe NJP
NJP UniChem ZINC ZINC000098209228
NJP UniChem PubChem 52948900
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NJP O3 1.564 -0.079 3.754 ETKDGv3 1
NJP PA 1.717 1.588 4.103 ETKDGv3 2
NJP PN 2.728 -0.517 2.587 ETKDGv3 3
NJP N1A -1.412 -2.284 -2.364 ETKDGv3 4
NJP O1A 1.448 1.812 5.760 ETKDGv3 5
NJP C1B -2.763 0.875 1.522 ETKDGv3 6
NJP C1D 2.123 0.988 -2.724 ETKDGv3 7
NJP N1N 2.717 -0.203 -3.358 ETKDGv3 8
NJP O1N 4.087 -0.581 3.248 ETKDGv3 9
NJP O1X -5.245 -1.313 4.117 ETKDGv3 10
NJP C2A -2.430 -1.251 -2.371 ETKDGv3 11
NJP O2A 3.092 2.129 3.768 ETKDGv3 12
NJP C2B -3.555 0.937 2.823 ETKDGv3 13
NJP O2B -4.937 0.788 2.554 ETKDGv3 14
NJP P2B -5.720 0.107 3.911 ETKDGv3 15
NJP C2D 0.617 0.813 -2.563 ETKDGv3 16
NJP O2D -0.122 1.210 -3.695 ETKDGv3 17
NJP C2N 2.906 -0.225 -4.655 ETKDGv3 18
NJP O2N 2.351 -2.057 1.993 ETKDGv3 19
NJP O2X -7.388 0.092 3.633 ETKDGv3 20
NJP N3A -2.777 -0.654 -1.261 ETKDGv3 21
NJP C3B -3.217 2.319 3.331 ETKDGv3 22
NJP O3B -4.115 3.266 2.809 ETKDGv3 23
NJP C3D 0.310 1.620 -1.329 ETKDGv3 24
NJP O3D 0.005 2.951 -1.662 ETKDGv3 25
NJP C3N 3.436 -1.437 -5.331 ETKDGv3 26
NJP O3X -5.398 1.016 5.303 ETKDGv3 27
NJP C4A -2.151 -1.066 -0.039 ETKDGv3 28
NJP C4B -1.816 2.550 2.757 ETKDGv3 29
NJP O4B -1.656 1.747 1.606 ETKDGv3 30
NJP C4D 1.637 1.558 -0.560 ETKDGv3 31
NJP O4D 2.683 1.202 -1.446 ETKDGv3 32
NJP C4N 3.672 -2.530 -4.587 ETKDGv3 33
NJP C5A -1.241 -2.000 -0.008 ETKDGv3 34
NJP C5B -0.723 2.198 3.775 ETKDGv3 35
NJP O5B 0.545 2.448 3.209 ETKDGv3 36
NJP C5D 1.584 0.542 0.585 ETKDGv3 37
NJP O5D 2.795 0.601 1.299 ETKDGv3 38
NJP C5N 3.435 -2.505 -3.135 ETKDGv3 39
NJP C6A -0.826 -2.652 -1.256 ETKDGv3 40
NJP N6A 0.209 -3.634 -1.273 ETKDGv3 41
NJP C6N 2.986 -1.382 -2.562 ETKDGv3 42
NJP N7A -0.686 -2.120 1.294 ETKDGv3 43
NJP C7N 3.674 -1.454 -6.795 ETKDGv3 44
NJP N7N 3.876 -0.244 -7.529 ETKDGv3 45
NJP O7N 3.712 -2.554 -7.412 ETKDGv3 46
NJP C8A -1.320 -1.223 1.992 ETKDGv3 47
NJP O8N 3.681 -3.649 -2.377 ETKDGv3 48
NJP N9A -2.305 -0.487 1.244 ETKDGv3 49
NJP HO1A 1.522 2.790 5.899 ETKDGv3 50
NJP H1B -3.408 1.222 0.684 ETKDGv3 51
NJP H1D 2.344 1.898 -3.328 ETKDGv3 52
NJP H2A -2.890 -0.958 -3.305 ETKDGv3 53
NJP H2B -3.152 0.176 3.532 ETKDGv3 54
NJP H2D 0.391 -0.253 -2.350 ETKDGv3 55
NJP HO2D 0.190 2.107 -3.980 ETKDGv3 56
NJP H2N 2.638 0.638 -5.253 ETKDGv3 57
NJP HO2N 3.017 -2.223 1.278 ETKDGv3 58
NJP HO2X -7.618 1.033 3.426 ETKDGv3 59
NJP H3B -3.235 2.344 4.445 ETKDGv3 60
NJP HO3B -3.984 4.098 3.335 ETKDGv3 61
NJP H3D -0.540 1.162 -0.775 ETKDGv3 62
NJP HO3D -0.382 3.363 -0.845 ETKDGv3 63
NJP HO3X -5.778 1.910 5.114 ETKDGv3 64
NJP H4B -1.692 3.618 2.470 ETKDGv3 65
NJP H4D 1.866 2.555 -0.122 ETKDGv3 66
NJP H4N 4.052 -3.440 -5.037 ETKDGv3 67
NJP H5B -0.856 1.130 4.065 ETKDGv3 68
NJP H5BA -0.851 2.835 4.678 ETKDGv3 69
NJP H5D 1.420 -0.471 0.158 ETKDGv3 70
NJP H5DA 0.730 0.794 1.248 ETKDGv3 71
NJP HN6A 0.695 -3.911 -0.392 ETKDGv3 72
NJP HN6B 0.507 -4.071 -2.173 ETKDGv3 73
NJP H6N 2.810 -1.369 -1.496 ETKDGv3 74
NJP HN7N 4.008 0.673 -7.051 ETKDGv3 75
NJP HN7A 3.983 -0.277 -8.567 ETKDGv3 76
NJP H8A -1.097 -1.038 3.033 ETKDGv3 77
NJP HO8N 3.524 -3.670 -1.376 ETKDGv3 78
#