data_NJZ
#
_chem_comp.id NJZ
_chem_comp.name "[3-bromanyl-5-(carbamimidoylsulfanylmethyl)phenyl]methyl carbamimidothioate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 Br N4 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-02
_chem_comp.pdbx_modified_date 2019-12-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 333.271
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NJZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6TL2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NJZ CAB C1 C 0 1 N N N N N N -27.492 -17.853 -31.252 -4.739 2.224 -0.068 CAB NJZ 1
NJZ CAE C2 C 0 1 N N N N N N -25.704 -18.200 -29.116 -2.376 1.041 -0.780 CAE NJZ 2
NJZ CAF C3 C 0 1 Y N N N N N -24.882 -17.568 -28.188 -1.141 0.281 -0.372 CAF NJZ 3
NJZ CAG C4 C 0 1 Y N N N N N -25.376 -17.163 -26.943 -1.148 -1.102 -0.372 CAG NJZ 4
NJZ CAH C5 C 0 1 Y N N N N N -24.520 -16.508 -26.048 -0.014 -1.799 0.001 CAH NJZ 5
NJZ CAJ C6 C 0 1 Y N N N N N -23.202 -16.263 -26.403 1.128 -1.113 0.375 CAJ NJZ 6
NJZ CAK C7 C 0 1 Y N N N N N -22.721 -16.638 -27.652 1.135 0.269 0.374 CAK NJZ 7
NJZ CAL C8 C 0 1 N N N N N N -21.422 -16.384 -27.969 2.378 1.017 0.781 CAL NJZ 8
NJZ CAN C9 C 0 1 N N N N N N -18.919 -17.779 -26.998 4.752 2.176 0.066 CAN NJZ 9
NJZ CAQ C10 C 0 1 Y N N N N N -23.559 -17.310 -28.540 0.002 0.966 -0.004 CAQ NJZ 10
NJZ NAA N1 N 0 1 N N N N N N -28.383 -18.727 -30.786 -5.787 2.667 0.705 NAA NJZ 11
NJZ NAC N2 N 0 1 N N N N N N -27.316 -17.597 -32.547 -4.730 2.457 -1.351 NAC NJZ 12
NJZ NAO N3 N 0 1 N N N N N N -18.314 -18.744 -26.298 5.804 2.608 -0.707 NAO NJZ 13
NJZ NAP N4 N 0 1 N N N N N N -18.261 -16.876 -27.711 4.749 2.405 1.350 NAP NJZ 14
NJZ SAD S1 S 0 1 N N N N N N -26.559 -16.927 -30.117 -3.404 1.348 0.678 SAD NJZ 15
NJZ SAM S2 S 0 1 N N N N N N -20.671 -17.690 -26.885 3.408 1.313 -0.678 SAM NJZ 16
NJZ BR1 BR1 BR 0 0 N N N N N N -25.065 -15.932 -24.345 -0.023 -3.690 0.002 BR1 NJZ 17
NJZ HAE H1 H 0 1 N N N N N N -26.448 -18.817 -28.590 -2.087 1.992 -1.228 HAE NJZ 18
NJZ HAF H2 H 0 1 N N N N N N -25.096 -18.839 -29.773 -2.941 0.454 -1.505 HAF NJZ 19
NJZ HAG H3 H 0 1 N N N N N N -26.405 -17.353 -26.675 -2.040 -1.637 -0.664 HAG NJZ 20
NJZ HAJ H4 H 0 1 N N N N N N -22.542 -15.775 -25.701 2.014 -1.657 0.667 HAJ NJZ 21
NJZ HAM H5 H 0 1 N N N N N N -21.209 -16.548 -29.036 2.099 1.971 1.228 HAM NJZ 22
NJZ HAL H6 H 0 1 N N N N N N -21.109 -15.369 -27.684 2.937 0.425 1.506 HAL NJZ 23
NJZ HAQ H7 H 0 1 N N N N N N -23.183 -17.631 -29.500 0.009 2.046 -0.009 HAQ NJZ 24
NJZ HAA H8 H 0 1 N N N N N N -28.504 -18.840 -29.800 -5.792 2.497 1.660 HAA NJZ 25
NJZ HAT H9 H 0 1 N N N N N N -28.931 -19.270 -31.422 -6.522 3.149 0.294 HAT NJZ 26
NJZ HAC H10 H 0 1 N N N N N N -26.641 -16.875 -32.698 -3.990 2.145 -1.895 HAC NJZ 27
NJZ HAO H11 H 0 1 N N N N N N -18.857 -19.374 -25.743 5.807 2.437 -1.662 HAO NJZ 28
NJZ HAU H12 H 0 1 N N N N N N -17.319 -18.836 -26.330 6.544 3.083 -0.298 HAU NJZ 29
NJZ HAP H13 H 0 1 N N N N N N -17.271 -17.007 -27.659 5.489 2.880 1.760 HAP NJZ 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NJZ NAC CAB DOUB N N 1
NJZ CAB NAA SING N N 2
NJZ CAB SAD SING N N 3
NJZ SAD CAE SING N N 4
NJZ CAE CAF SING N N 5
NJZ CAQ CAF DOUB Y N 6
NJZ CAQ CAK SING Y N 7
NJZ CAF CAG SING Y N 8
NJZ CAL CAK SING N N 9
NJZ CAL SAM SING N N 10
NJZ NAP CAN DOUB N N 11
NJZ CAK CAJ DOUB Y N 12
NJZ CAN SAM SING N N 13
NJZ CAN NAO SING N N 14
NJZ CAG CAH DOUB Y N 15
NJZ CAJ CAH SING Y N 16
NJZ CAH BR1 SING N N 17
NJZ CAE HAE SING N N 18
NJZ CAE HAF SING N N 19
NJZ CAG HAG SING N N 20
NJZ CAJ HAJ SING N N 21
NJZ CAL HAM SING N N 22
NJZ CAL HAL SING N N 23
NJZ CAQ HAQ SING N N 24
NJZ NAA HAA SING N N 25
NJZ NAA HAT SING N N 26
NJZ NAC HAC SING N N 27
NJZ NAO HAO SING N N 28
NJZ NAO HAU SING N N 29
NJZ NAP HAP SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NJZ InChI InChI 1.03 InChI=1S/C10H13BrN4S2/c11-8-2-6(4-16-9(12)13)1-7(3-8)5-17-10(14)15/h1-3H,4-5H2,(H3,12,13)(H3,14,15)
NJZ InChIKey InChI 1.03 KHMFYTPEFLUGGV-UHFFFAOYSA-N
NJZ SMILES_CANONICAL CACTVS 3.385 NC(=N)SCc1cc(Br)cc(CSC(N)=N)c1
NJZ SMILES CACTVS 3.385 NC(=N)SCc1cc(Br)cc(CSC(N)=N)c1
NJZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\SCc1cc(cc(c1)CS/C(=N/[H])/N)Br)/N"
NJZ SMILES "OpenEye OEToolkits" 2.0.7 c1c(cc(cc1CSC(=N)N)Br)CSC(=N)N
#
_pdbx_chem_comp_identifier.comp_id NJZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[3-bromanyl-5-(carbamimidoylsulfanylmethyl)phenyl]methyl carbamimidothioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NJZ 'Create component' 2019-12-02 PDBE
NJZ 'Initial release' 2019-12-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NJZ CAB C 10.301 4.643 1
NJZ CAE C 9.002 2.393 2
NJZ CAF C 9.002 0.892 3
NJZ CAG C 10.301 0.142 4
NJZ CAH C 10.301 -1.357 5
NJZ CAJ C 9.002 -2.107 6
NJZ CAK C 7.702 -1.357 7
NJZ CAL C 6.404 -2.107 8
NJZ CAN C 5.104 -4.357 9
NJZ CAQ C 7.702 0.142 10
NJZ NAA N 9.002 5.393 11
NJZ NAC N 11.600 5.393 12
NJZ NAO N 3.805 -3.607 13
NJZ NAP N 5.104 -5.857 14
NJZ SAD S 10.301 3.143 15
NJZ SAM S 6.404 -3.607 16
NJZ BR1 Br 11.600 -2.107 17
NJZ HAC H 11.600 6.892 18
NJZ HAP H 6.404 -6.607 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NJZ NAC CAB DOUBLE NONE 1
NJZ CAB NAA SINGLE ENDUPRIGHT 2
NJZ CAB SAD SINGLE ENDDOWNRIGHT 3
NJZ SAD CAE SINGLE NONE 4
NJZ CAE CAF SINGLE NONE 5
NJZ CAQ CAF DOUBLE NONE 6
NJZ CAQ CAK SINGLE NONE 7
NJZ CAF CAG SINGLE NONE 8
NJZ CAL CAK SINGLE NONE 9
NJZ CAL SAM SINGLE NONE 10
NJZ NAP CAN DOUBLE NONE 11
NJZ CAK CAJ DOUBLE NONE 12
NJZ CAN SAM SINGLE ENDUPRIGHT 13
NJZ CAN NAO SINGLE ENDDOWNRIGHT 14
NJZ CAG CAH DOUBLE NONE 15
NJZ CAJ CAH SINGLE NONE 16
NJZ CAH BR1 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NJZ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NJZ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NJZ CAF S1 1
NJZ CAG S1 1
NJZ CAH S1 1
NJZ CAJ S1 1
NJZ CAK S1 1
NJZ CAQ S1 1
NJZ CAF F1 1
NJZ CAQ F1 1
NJZ CAK F1 1
NJZ CAJ F1 1
NJZ CAH F1 1
NJZ CAG F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NJZ
_pdbe_chem_comp_rdkit_properties.exactmw 331.977
_pdbe_chem_comp_rdkit_properties.amw 333.280
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.668
_pdbe_chem_comp_rdkit_properties.tpsa 99.740
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.593
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.028
_pdbe_chem_comp_rdkit_properties.chi0v 11.202
_pdbe_chem_comp_rdkit_properties.chi1v 6.326
_pdbe_chem_comp_rdkit_properties.chi2v 2.582
_pdbe_chem_comp_rdkit_properties.chi3v 2.582
_pdbe_chem_comp_rdkit_properties.chi4v 1.721
_pdbe_chem_comp_rdkit_properties.chi0n 20.983
_pdbe_chem_comp_rdkit_properties.chi1n 10.083
_pdbe_chem_comp_rdkit_properties.chi2n 1.208
_pdbe_chem_comp_rdkit_properties.chi3n 1.208
_pdbe_chem_comp_rdkit_properties.chi4n 0.734
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.660
_pdbe_chem_comp_rdkit_properties.kappa1 4.467
_pdbe_chem_comp_rdkit_properties.kappa2 6.927
_pdbe_chem_comp_rdkit_properties.kappa3 5.994
_pdbe_chem_comp_rdkit_properties.Phi 1.820
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NJZ UniChem PDBe NJZ
NJZ UniChem PubChem 145707026
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NJZ CAB 1.150 1.539 2.220 ETKDGv3 1
NJZ CAE -0.012 2.748 0.134 ETKDGv3 2
NJZ CAF 0.293 1.575 -0.761 ETKDGv3 3
NJZ CAG 1.509 1.591 -1.610 ETKDGv3 4
NJZ CAH 1.797 0.547 -2.396 ETKDGv3 5
NJZ CAJ 0.892 -0.620 -2.439 ETKDGv3 6
NJZ CAK -0.232 -0.633 -1.701 ETKDGv3 7
NJZ CAL -1.161 -1.814 -1.748 ETKDGv3 8
NJZ CAN -1.279 -2.471 0.834 ETKDGv3 9
NJZ CAQ -0.536 0.517 -0.815 ETKDGv3 10
NJZ NAA 1.932 0.398 1.874 ETKDGv3 11
NJZ NAC 0.318 1.475 3.209 ETKDGv3 12
NJZ NAO -2.630 -2.783 1.179 ETKDGv3 13
NJZ NAP -0.563 -1.714 1.600 ETKDGv3 14
NJZ SAD 1.354 3.072 1.305 ETKDGv3 15
NJZ SAM -0.559 -3.151 -0.660 ETKDGv3 16
NJZ BR1 3.375 0.561 -3.472 ETKDGv3 17
NJZ HAE -0.149 3.650 -0.499 ETKDGv3 18
NJZ HAF -0.953 2.598 0.707 ETKDGv3 19
NJZ HAG 2.171 2.447 -1.586 ETKDGv3 20
NJZ HAJ 1.139 -1.457 -3.080 ETKDGv3 21
NJZ HAM -1.214 -2.208 -2.786 ETKDGv3 22
NJZ HAL -2.194 -1.514 -1.467 ETKDGv3 23
NJZ HAQ -1.433 0.492 -0.208 ETKDGv3 24
NJZ HAA 1.853 -0.488 2.421 ETKDGv3 25
NJZ HAT 2.602 0.441 1.074 ETKDGv3 26
NJZ HAC -0.258 2.300 3.487 ETKDGv3 27
NJZ HAO -3.065 -2.398 2.046 ETKDGv3 28
NJZ HAU -3.201 -3.397 0.557 ETKDGv3 29
NJZ HAP -0.947 -1.303 2.480 ETKDGv3 30
#