data_NKA
#
_chem_comp.id NKA
_chem_comp.name
"(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl {(2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-[(2-methylpropyl)({2-[(propan-2-yl)amino]-1,3-benzoxazol-6-yl}sulfonyl)amino]butan-2-yl}carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H43 F N4 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-16
_chem_comp.pdbx_modified_date 2020-05-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 674.780
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NKA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OYD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NKA CAE C1 C 0 1 N N R N N N -6.285 -16.652 20.732 -6.046 3.837 1.037 CAE NKA 1
NKA CAH C2 C 0 1 N N N N N N -7.019 -15.378 20.838 -6.466 2.852 2.140 CAH NKA 2
NKA CAG C3 C 0 1 N N R N N N -8.140 -15.695 19.873 -5.330 1.796 2.060 CAG NKA 3
NKA CAJ C4 C 0 1 N N N N N N -8.995 -16.862 20.393 -4.108 2.506 2.677 CAJ NKA 4
NKA OAI O1 O 0 1 N N N N N N -8.458 -17.438 21.572 -3.726 3.566 1.817 OAI NKA 5
NKA CAA C5 C 0 1 N N R N N N -7.101 -17.798 21.277 -4.706 4.525 1.407 CAA NKA 6
NKA OAB O2 O 0 1 N N N N N N -7.086 -18.824 20.211 -4.237 4.912 0.073 OAB NKA 7
NKA CAC C6 C 0 1 N N N N N N -6.414 -18.381 19.067 -4.370 3.708 -0.714 CAC NKA 8
NKA CAD C7 C 0 1 N N S N N N -6.233 -16.886 19.214 -5.567 2.927 -0.135 CAD NKA 9
NKA CAF C8 C 0 1 N N S N N N -7.389 -16.035 18.633 -5.070 1.639 0.544 CAF NKA 10
NKA OAK O3 O 0 1 N N N N N N -8.236 -16.718 17.769 -3.649 1.469 0.301 OAK NKA 11
NKA CAL C9 C 0 1 N N N N N N -8.373 -16.329 16.452 -3.184 0.206 0.251 CAL NKA 12
NKA OAM O4 O 0 1 N N N N N N -8.206 -15.188 16.110 -3.946 -0.728 0.407 OAM NKA 13
NKA NAN N1 N 0 1 N N N N N N -8.657 -17.347 15.616 -1.875 -0.022 0.029 NAN NKA 14
NKA CAO C10 C 0 1 N N S N N N -8.770 -17.392 14.176 -1.369 -1.396 -0.026 CAO NKA 15
NKA CAW C11 C 0 1 N N N N N N -7.708 -18.422 13.704 -1.556 -1.953 -1.439 CAW NKA 16
NKA CBH C12 C 0 1 Y N N N N N -6.503 -18.057 14.263 -3.027 -2.057 -1.747 CBH NKA 17
NKA CBI C13 C 0 1 Y N N N N N -5.892 -16.894 13.833 -3.716 -3.216 -1.443 CBI NKA 18
NKA CBJ C14 C 0 1 Y N N N N N -4.676 -16.480 14.387 -5.066 -3.312 -1.726 CBJ NKA 19
NKA CBK C15 C 0 1 Y N N N N N -4.047 -17.220 15.379 -5.727 -2.247 -2.314 CBK NKA 20
NKA FBU F1 F 0 1 N N N N N N -2.840 -16.814 15.950 -7.046 -2.340 -2.590 FBU NKA 21
NKA CBL C16 C 0 1 Y N N N N N -4.653 -18.397 15.799 -5.036 -1.087 -2.617 CBL NKA 22
NKA CBM C17 C 0 1 Y N N N N N -5.857 -18.815 15.227 -3.688 -0.991 -2.329 CBM NKA 23
NKA CAT C18 C 0 1 N N R N N N -10.221 -17.733 13.687 0.118 -1.407 0.335 CAT NKA 24
NKA OBO O5 O 0 1 N N N N N N -10.519 -19.074 13.799 0.854 -0.694 -0.660 OBO NKA 25
NKA CAP C19 C 0 1 N N N N N N -10.367 -17.376 12.205 0.616 -2.852 0.400 CAP NKA 26
NKA NAQ N2 N 0 1 N N N N N N -10.346 -15.942 12.113 2.000 -2.871 0.879 NAQ NKA 27
NKA CBP C20 C 0 1 N N N N N N -11.631 -15.443 11.770 2.283 -2.722 2.309 CBP NKA 28
NKA CBQ C21 C 0 1 N N N N N N -12.385 -14.954 13.011 2.231 -4.094 2.984 CBQ NKA 29
NKA CBS C22 C 0 1 N N N N N N -11.679 -13.811 13.720 2.660 -3.959 4.447 CBS NKA 30
NKA CBR C23 C 0 1 N N N N N N -13.666 -14.407 12.456 0.804 -4.641 2.919 CBR NKA 31
NKA SAR S1 S 0 1 N N N N N N -9.131 -15.306 11.098 3.246 -3.059 -0.196 SAR NKA 32
NKA OAU O6 O 0 1 N N N N N N -7.851 -16.097 11.346 4.288 -3.719 0.510 OAU NKA 33
NKA OAV O7 O 0 1 N N N N N N -8.984 -13.927 11.439 2.671 -3.570 -1.391 OAV NKA 34
NKA CAS C24 C 0 1 Y N N N N N -9.590 -15.547 9.512 3.849 -1.449 -0.583 CAS NKA 35
NKA CAX C25 C 0 1 Y N N N N N -10.253 -14.570 8.829 4.767 -0.842 0.250 CAX NKA 36
NKA CBB C26 C 0 1 Y N N N N N -9.240 -16.734 8.881 3.402 -0.803 -1.725 CBB NKA 37
NKA CBA C27 C 0 1 Y N N N N N -9.631 -16.935 7.572 3.866 0.456 -2.040 CBA NKA 38
NKA CAZ C28 C 0 1 Y N N N N N -10.278 -15.982 6.961 4.789 1.082 -1.204 CAZ NKA 39
NKA NBE N3 N 0 1 Y N N N N N -10.775 -15.933 5.749 5.420 2.289 -1.236 NBE NKA 40
NKA CAY C29 C 0 1 Y N N N N N -10.564 -14.822 7.577 5.243 0.423 -0.051 CAY NKA 41
NKA OBC O8 O 0 1 Y N N N N N -11.249 -14.046 6.668 6.115 1.263 0.551 OBC NKA 42
NKA CBD C30 C 0 1 Y N N N N N -11.345 -14.746 5.618 6.200 2.382 -0.190 CBD NKA 43
NKA NBF N4 N 0 1 N N N N N N -11.924 -14.338 4.491 6.994 3.467 0.107 NBF NKA 44
NKA CBG C31 C 0 1 N N N N N N -12.572 -13.018 4.439 7.006 4.631 -0.781 CBG NKA 45
NKA CBT C32 C 0 1 N N N N N N -14.097 -13.135 4.570 7.418 5.873 0.012 CBT NKA 46
NKA CBN C33 C 0 1 N N N N N N -12.221 -12.382 3.124 8.004 4.397 -1.917 CBN NKA 47
NKA H1 H1 H 0 1 N N N N N N -5.279 -16.606 21.176 -6.833 4.541 0.768 H1 NKA 48
NKA H2 H2 H 0 1 N N N N N N -6.415 -14.521 20.506 -6.480 3.338 3.115 H2 NKA 49
NKA H3 H3 H 0 1 N N N N N N -7.388 -15.194 21.858 -7.434 2.403 1.915 H3 NKA 50
NKA H4 H4 H 0 1 N N N N N N -8.771 -14.808 19.714 -5.577 0.860 2.562 H4 NKA 51
NKA H5 H5 H 0 1 N N N N N N -10.007 -16.490 20.610 -4.372 2.905 3.657 H5 NKA 52
NKA H6 H6 H 0 1 N N N N N N -9.048 -17.636 19.614 -3.284 1.800 2.777 H6 NKA 53
NKA H7 H7 H 0 1 N N N N N N -6.609 -18.195 22.177 -4.822 5.351 2.108 H7 NKA 54
NKA H8 H8 H 0 1 N N N N N N -7.009 -18.603 18.169 -4.560 3.964 -1.756 H8 NKA 55
NKA H9 H9 H 0 1 N N N N N N -5.434 -18.875 18.989 -3.462 3.110 -0.636 H9 NKA 56
NKA H10 H10 H 0 1 N N N N N N -5.267 -16.561 18.801 -6.347 2.747 -0.876 H10 NKA 57
NKA H11 H11 H 0 1 N N N N N N -6.980 -15.124 18.171 -5.621 0.780 0.160 H11 NKA 58
NKA H12 H12 H 0 1 N N N N N N -8.817 -18.223 16.071 -1.267 0.723 -0.095 H12 NKA 59
NKA H13 H13 H 0 1 N N N N N N -8.498 -16.411 13.759 -1.920 -2.014 0.684 H13 NKA 60
NKA H14 H14 H 0 1 N N N N N N -7.988 -19.431 14.040 -1.080 -1.286 -2.158 H14 NKA 61
NKA H15 H15 H 0 1 N N N N N N -7.633 -18.408 12.607 -1.100 -2.941 -1.503 H15 NKA 62
NKA H16 H16 H 0 1 N N N N N N -6.358 -16.299 13.062 -3.200 -4.046 -0.985 H16 NKA 63
NKA H17 H17 H 0 1 N N N N N N -4.218 -15.567 14.036 -5.604 -4.218 -1.489 H17 NKA 64
NKA H18 H18 H 0 1 N N N N N N -4.191 -18.993 16.572 -5.551 -0.256 -3.076 H18 NKA 65
NKA H19 H19 H 0 1 N N N N N N -6.295 -19.750 15.543 -3.149 -0.084 -2.562 H19 NKA 66
NKA H20 H20 H 0 1 N N N N N N -10.931 -17.125 14.267 0.260 -0.930 1.304 H20 NKA 67
NKA H21 H21 H 0 1 N N N N N N -10.441 -19.341 14.707 0.831 -1.103 -1.536 H21 NKA 68
NKA H22 H22 H 0 1 N N N N N N -11.319 -17.765 11.815 -0.013 -3.423 1.084 H22 NKA 69
NKA H23 H23 H 0 1 N N N N N N -9.533 -17.803 11.630 0.570 -3.298 -0.594 H23 NKA 70
NKA H24 H24 H 0 1 N N N N N N -11.515 -14.605 11.067 3.274 -2.289 2.440 H24 NKA 71
NKA H25 H25 H 0 1 N N N N N N -12.211 -16.245 11.291 1.538 -2.067 2.760 H25 NKA 72
NKA H26 H26 H 0 1 N N N N N N -12.576 -15.787 13.704 2.907 -4.778 2.469 H26 NKA 73
NKA H27 H27 H 0 1 N N N N N N -12.266 -13.505 14.599 1.985 -3.275 4.961 H27 NKA 74
NKA H28 H28 H 0 1 N N N N N N -10.681 -14.141 14.043 2.623 -4.936 4.928 H28 NKA 75
NKA H29 H29 H 0 1 N N N N N N -11.579 -12.959 13.032 3.677 -3.569 4.493 H29 NKA 76
NKA H30 H30 H 0 1 N N N N N N -14.289 -14.025 13.278 0.549 -4.868 1.884 H30 NKA 77
NKA H31 H31 H 0 1 N N N N N N -13.442 -13.589 11.755 0.736 -5.550 3.517 H31 NKA 78
NKA H32 H32 H 0 1 N N N N N N -14.207 -15.206 11.927 0.111 -3.896 3.310 H32 NKA 79
NKA H33 H33 H 0 1 N N N N N N -10.511 -13.631 9.296 5.114 -1.353 1.137 H33 NKA 80
NKA H34 H34 H 0 1 N N N N N N -8.671 -17.487 9.406 2.687 -1.290 -2.372 H34 NKA 81
NKA H35 H35 H 0 1 N N N N N N -9.406 -17.862 7.065 3.515 0.955 -2.932 H35 NKA 82
NKA H36 H36 H 0 1 N N N N N N -12.625 -15.014 4.264 7.547 3.459 0.905 H36 NKA 83
NKA H37 H37 H 0 1 N N N N N N -12.194 -12.388 5.258 6.010 4.780 -1.198 H37 NKA 84
NKA H38 H38 H 0 1 N N N N N N -14.348 -13.601 5.534 8.414 5.724 0.428 H38 NKA 85
NKA H39 H39 H 0 1 N N N N N N -14.547 -12.133 4.519 7.427 6.740 -0.650 H39 NKA 86
NKA H40 H40 H 0 1 N N N N N N -14.489 -13.755 3.750 6.707 6.040 0.821 H40 NKA 87
NKA H41 H41 H 0 1 N N N N N N -12.694 -11.391 3.058 7.710 3.512 -2.482 H41 NKA 88
NKA H42 H42 H 0 1 N N N N N N -11.129 -12.273 3.049 8.012 5.264 -2.578 H42 NKA 89
NKA H43 H43 H 0 1 N N N N N N -12.583 -13.016 2.302 9.000 4.248 -1.500 H43 NKA 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NKA CBN CBG SING N N 1
NKA CBG NBF SING N N 2
NKA CBG CBT SING N N 3
NKA NBF CBD SING N N 4
NKA CBD NBE DOUB Y N 5
NKA CBD OBC SING Y N 6
NKA NBE CAZ SING Y N 7
NKA OBC CAY SING Y N 8
NKA CAZ CBA DOUB Y N 9
NKA CAZ CAY SING Y N 10
NKA CBA CBB SING Y N 11
NKA CAY CAX DOUB Y N 12
NKA CAX CAS SING Y N 13
NKA CBB CAS DOUB Y N 14
NKA CAS SAR SING N N 15
NKA SAR OAU DOUB N N 16
NKA SAR OAV DOUB N N 17
NKA SAR NAQ SING N N 18
NKA CBP NAQ SING N N 19
NKA CBP CBQ SING N N 20
NKA NAQ CAP SING N N 21
NKA CAP CAT SING N N 22
NKA CBR CBQ SING N N 23
NKA CBQ CBS SING N N 24
NKA CAT OBO SING N N 25
NKA CAT CAO SING N N 26
NKA CAW CAO SING N N 27
NKA CAW CBH SING N N 28
NKA CBI CBH DOUB Y N 29
NKA CBI CBJ SING Y N 30
NKA CAO NAN SING N N 31
NKA CBH CBM SING Y N 32
NKA CBJ CBK DOUB Y N 33
NKA CBM CBL DOUB Y N 34
NKA CBK CBL SING Y N 35
NKA CBK FBU SING N N 36
NKA NAN CAL SING N N 37
NKA OAM CAL DOUB N N 38
NKA CAL OAK SING N N 39
NKA OAK CAF SING N N 40
NKA CAF CAD SING N N 41
NKA CAF CAG SING N N 42
NKA CAC CAD SING N N 43
NKA CAC OAB SING N N 44
NKA CAD CAE SING N N 45
NKA CAG CAJ SING N N 46
NKA CAG CAH SING N N 47
NKA OAB CAA SING N N 48
NKA CAJ OAI SING N N 49
NKA CAE CAH SING N N 50
NKA CAE CAA SING N N 51
NKA CAA OAI SING N N 52
NKA CAE H1 SING N N 53
NKA CAH H2 SING N N 54
NKA CAH H3 SING N N 55
NKA CAG H4 SING N N 56
NKA CAJ H5 SING N N 57
NKA CAJ H6 SING N N 58
NKA CAA H7 SING N N 59
NKA CAC H8 SING N N 60
NKA CAC H9 SING N N 61
NKA CAD H10 SING N N 62
NKA CAF H11 SING N N 63
NKA NAN H12 SING N N 64
NKA CAO H13 SING N N 65
NKA CAW H14 SING N N 66
NKA CAW H15 SING N N 67
NKA CBI H16 SING N N 68
NKA CBJ H17 SING N N 69
NKA CBL H18 SING N N 70
NKA CBM H19 SING N N 71
NKA CAT H20 SING N N 72
NKA OBO H21 SING N N 73
NKA CAP H22 SING N N 74
NKA CAP H23 SING N N 75
NKA CBP H24 SING N N 76
NKA CBP H25 SING N N 77
NKA CBQ H26 SING N N 78
NKA CBS H27 SING N N 79
NKA CBS H28 SING N N 80
NKA CBS H29 SING N N 81
NKA CBR H30 SING N N 82
NKA CBR H31 SING N N 83
NKA CBR H32 SING N N 84
NKA CAX H33 SING N N 85
NKA CBB H34 SING N N 86
NKA CBA H35 SING N N 87
NKA NBF H36 SING N N 88
NKA CBG H37 SING N N 89
NKA CBT H38 SING N N 90
NKA CBT H39 SING N N 91
NKA CBT H40 SING N N 92
NKA CBN H41 SING N N 93
NKA CBN H42 SING N N 94
NKA CBN H43 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NKA SMILES ACDLabs 12.01 C12CC3COC1OCC2C3OC(=O)NC(Cc4ccc(cc4)F)C(O)CN(CC(C)C)S(=O)(=O)c5cc6c(cc5)nc(o6)NC(C)C
NKA InChI InChI 1.03 InChI=1S/C33H43FN4O8S/c1-18(2)14-38(47(41,42)23-9-10-26-29(13-23)45-32(36-26)35-19(3)4)15-28(39)27(11-20-5-7-22(34)8-6-20)37-33(40)46-30-21-12-24-25(30)17-44-31(24)43-16-21/h5-10,13,18-19,21,24-25,27-28,30-31,39H,11-12,14-17H2,1-4H3,(H,35,36)(H,37,40)/t21-,24-,25-,27+,28-,30+,31+/m1/s1
NKA InChIKey InChI 1.03 WQIWHYJHYCEVFO-BLFKHSGCSA-N
NKA SMILES_CANONICAL CACTVS 3.385 CC(C)CN(C[C@@H](O)[C@H](Cc1ccc(F)cc1)NC(=O)O[C@H]2[C@H]3CO[C@H]4OC[C@@H]2[C@H]4C3)[S](=O)(=O)c5ccc6nc(NC(C)C)oc6c5
NKA SMILES CACTVS 3.385 CC(C)CN(C[CH](O)[CH](Cc1ccc(F)cc1)NC(=O)O[CH]2[CH]3CO[CH]4OC[CH]2[CH]4C3)[S](=O)(=O)c5ccc6nc(NC(C)C)oc6c5
NKA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)CN(C[C@H]([C@H](Cc1ccc(cc1)F)NC(=O)O[C@H]2[C@@H]3C[C@@H]4[C@H]2CO[C@@H]4OC3)O)S(=O)(=O)c5ccc6c(c5)oc(n6)NC(C)C
NKA SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CN(CC(C(Cc1ccc(cc1)F)NC(=O)OC2C3CC4C2COC4OC3)O)S(=O)(=O)c5ccc6c(c5)oc(n6)NC(C)C
#
_pdbx_chem_comp_identifier.comp_id NKA
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl {(2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-[(2-methylpropyl)({2-[(propan-2-yl)amino]-1,3-benzoxazol-6-yl}sulfonyl)amino]butan-2-yl}carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NKA 'Create component' 2019-05-16 RCSB
NKA 'Initial release' 2020-05-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NKA CAE C 8.718 6.797 1
NKA CAH C 9.232 5.994 2
NKA CAG C 9.056 4.998 3
NKA CAJ C 10.432 4.883 4
NKA OAI O 10.924 6.773 5
NKA CAA C 9.363 7.710 6
NKA OAB O 8.334 8.864 7
NKA CAC C 6.975 8.125 8
NKA CAD C 7.383 6.691 9
NKA CAF C 7.440 5.118 10
NKA OAK O 6.361 2.554 11
NKA CAL C 4.754 2.023 12
NKA OAM O 3.712 3.012 13
NKA NAN N 4.255 0.385 14
NKA CAO C 2.627 0.103 15
NKA CAW C 1.756 1.291 16
NKA CBH C 0.237 1.214 17
NKA CBI C -0.506 -0.089 18
NKA CBJ C -2.006 -0.093 19
NKA CBK C -2.763 1.203 20
NKA FBU F -4.261 1.200 21
NKA CBL C -2.016 2.504 22
NKA CBM C -0.517 2.511 23
NKA CAT C 1.915 -1.326 24
NKA OBO O 2.701 -2.607 25
NKA CAP C 0.343 -1.372 26
NKA NAQ N -0.450 -2.694 27
NKA CBP C 0.272 -4.003 28
NKA CBQ C -0.507 -5.291 29
NKA CBS C -2.010 -5.265 30
NKA CBR C 0.218 -6.602 31
NKA SAR S -1.990 -2.683 32
NKA OAU O -1.998 -4.183 33
NKA OAV O -1.988 -1.183 34
NKA CAS C -3.519 -2.684 35
NKA CAX C -4.268 -3.982 36
NKA CBB C -4.266 -1.383 37
NKA CBA C -5.768 -1.383 38
NKA CAZ C -6.521 -2.680 39
NKA NBE N -7.989 -2.988 40
NKA CAY C -5.769 -3.977 41
NKA OBC O -6.776 -5.094 42
NKA CBD C -8.145 -4.481 43
NKA NBF N -9.446 -5.229 44
NKA CBG C -10.743 -4.477 45
NKA CBT C -10.741 -2.977 46
NKA CBN C -12.044 -5.225 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NKA CBN CBG SINGLE NONE 1
NKA CBG NBF SINGLE NONE 2
NKA CBG CBT SINGLE NONE 3
NKA NBF CBD SINGLE NONE 4
NKA CBD NBE DOUBLE NONE 5
NKA CBD OBC SINGLE NONE 6
NKA NBE CAZ SINGLE NONE 7
NKA OBC CAY SINGLE NONE 8
NKA CAZ CBA DOUBLE NONE 9
NKA CAZ CAY SINGLE NONE 10
NKA CBA CBB SINGLE NONE 11
NKA CAY CAX DOUBLE NONE 12
NKA CAX CAS SINGLE NONE 13
NKA CBB CAS DOUBLE NONE 14
NKA CAS SAR SINGLE NONE 15
NKA SAR OAU DOUBLE NONE 16
NKA SAR OAV DOUBLE NONE 17
NKA SAR NAQ SINGLE NONE 18
NKA CBP NAQ SINGLE NONE 19
NKA CBP CBQ SINGLE NONE 20
NKA NAQ CAP SINGLE NONE 21
NKA CAP CAT SINGLE NONE 22
NKA CBR CBQ SINGLE NONE 23
NKA CBQ CBS SINGLE NONE 24
NKA CAT OBO SINGLE BEGINDASH 25
NKA CAT CAO SINGLE NONE 26
NKA CAO CAW SINGLE BEGINDASH 27
NKA CAW CBH SINGLE NONE 28
NKA CBI CBH DOUBLE NONE 29
NKA CBI CBJ SINGLE NONE 30
NKA CAO NAN SINGLE NONE 31
NKA CBH CBM SINGLE NONE 32
NKA CBJ CBK DOUBLE NONE 33
NKA CBM CBL DOUBLE NONE 34
NKA CBK CBL SINGLE NONE 35
NKA CBK FBU SINGLE NONE 36
NKA NAN CAL SINGLE NONE 37
NKA OAM CAL DOUBLE NONE 38
NKA CAL OAK SINGLE NONE 39
NKA CAF OAK SINGLE BEGINDASH 40
NKA CAF CAD SINGLE NONE 41
NKA CAF CAG SINGLE NONE 42
NKA CAC CAD SINGLE NONE 43
NKA CAC OAB SINGLE NONE 44
NKA CAD CAE SINGLE NONE 45
NKA CAG CAJ SINGLE NONE 46
NKA CAG CAH SINGLE NONE 47
NKA OAB CAA SINGLE NONE 48
NKA CAJ OAI SINGLE NONE 49
NKA CAE CAH SINGLE NONE 50
NKA CAE CAA SINGLE NONE 51
NKA CAA OAI SINGLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NKA MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNS(=O)(=O)c1ccc2ncoc2c1)Cc1ccccc1)O[C@H]1[C@H]2CO[C@H]3OC[C@@H]1[C@H]3C2' InChI=1S/C26H29N3O7S/c30-26(36-24-17-11-20-21(24)14-34-25(20)33-13-17)29-18(10-16-4-2-1-3-5-16)8-9-28-37(31,32)19-6-7-22-23(12-19)35-15-27-22/h1-7,12,15,17-18,20-21,24-25,28H,8-11,13-14H2,(H,29,30)/t17-,18-,20-,21-,24+,25+/m1/s1 OIVCUKFQWZQUBV-COZKWSFWSA-N
NKA benzoxazole F1 fragment c1ccc2ocnc2c1 InChI=1S/C7H5NO/c1-2-4-7-6(3-1)8-5-9-7/h1-5H BCMCBBGGLRIHSE-UHFFFAOYSA-N
NKA cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
NKA furanose F3 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
NKA oxazole F4 fragment c1cocn1 InChI=1S/C3H3NO/c1-2-5-3-4-1/h1-3H ZCQWOFVYLHDMMC-UHFFFAOYSA-N
NKA phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NKA pyranose F6 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NKA CAE S1 1
NKA CAH S1 1
NKA CAG S1 1
NKA CAJ S1 1
NKA OAI S1 1
NKA CAA S1 1
NKA OAB S1 1
NKA CAC S1 1
NKA CAD S1 1
NKA CAF S1 1
NKA OAK S1 1
NKA CAL S1 1
NKA OAM S1 1
NKA NAN S1 1
NKA CAO S1 1
NKA CAW S1 1
NKA CBH S1 1
NKA CBI S1 1
NKA CBJ S1 1
NKA CBK S1 1
NKA CBL S1 1
NKA CBM S1 1
NKA CAT S1 1
NKA CAP S1 1
NKA NAQ S1 1
NKA SAR S1 1
NKA OAU S1 1
NKA OAV S1 1
NKA CAS S1 1
NKA CAX S1 1
NKA CBB S1 1
NKA CBA S1 1
NKA CAZ S1 1
NKA NBE S1 1
NKA CAY S1 1
NKA OBC S1 1
NKA CBD S1 1
NKA CAY F1 1
NKA OBC F1 1
NKA CBD F1 1
NKA NBE F1 1
NKA CAZ F1 1
NKA CBA F1 1
NKA CBB F1 1
NKA CAS F1 1
NKA CAX F1 1
NKA CAE F2 1
NKA CAD F2 1
NKA CAF F2 1
NKA CAG F2 1
NKA CAH F2 1
NKA CAD F3 1
NKA CAC F3 1
NKA OAB F3 1
NKA CAA F3 1
NKA CAE F3 1
NKA OAI F3 1
NKA CAY F4 1
NKA CAZ F4 1
NKA NBE F4 1
NKA CBD F4 1
NKA OBC F4 1
NKA CBH F5 1
NKA CBI F5 1
NKA CBJ F5 1
NKA CBK F5 1
NKA CBL F5 1
NKA CBM F5 1
NKA CAS F5 2
NKA CAX F5 2
NKA CAY F5 2
NKA CAZ F5 2
NKA CBA F5 2
NKA CBB F5 2
NKA CAG F6 1
NKA CAJ F6 1
NKA OAI F6 1
NKA CAA F6 1
NKA CAE F6 1
NKA CAH F6 1
NKA OAB F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NKA
_pdbe_chem_comp_rdkit_properties.exactmw 674.279
_pdbe_chem_comp_rdkit_properties.amw 674.792
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.576
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 334.164
_pdbe_chem_comp_rdkit_properties.tpsa 152.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.168
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.721
_pdbe_chem_comp_rdkit_properties.chi0v 23.158
_pdbe_chem_comp_rdkit_properties.chi1v 13.429
_pdbe_chem_comp_rdkit_properties.chi2v 6.738
_pdbe_chem_comp_rdkit_properties.chi3v 6.738
_pdbe_chem_comp_rdkit_properties.chi4v 4.526
_pdbe_chem_comp_rdkit_properties.chi0n 65.341
_pdbe_chem_comp_rdkit_properties.chi1n 33.292
_pdbe_chem_comp_rdkit_properties.chi2n 5.355
_pdbe_chem_comp_rdkit_properties.chi3n 5.355
_pdbe_chem_comp_rdkit_properties.chi4n 3.527
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.300
_pdbe_chem_comp_rdkit_properties.kappa1 9.475
_pdbe_chem_comp_rdkit_properties.kappa2 13.670
_pdbe_chem_comp_rdkit_properties.kappa3 7.410
_pdbe_chem_comp_rdkit_properties.Phi 2.756
#
_pdbe_chem_comp_external_mappings.comp_id NKA
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 146036005
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NKA CAE -7.803 2.517 1.237 ETKDGv3 1
NKA CAH -7.264 3.803 1.846 ETKDGv3 2
NKA CAG -5.852 3.774 1.297 ETKDGv3 3
NKA CAJ -5.933 4.027 -0.244 ETKDGv3 4
NKA OAI -7.240 3.831 -0.783 ETKDGv3 5
NKA CAA -7.848 2.634 -0.306 ETKDGv3 6
NKA OAB -7.214 1.518 -0.893 ETKDGv3 7
NKA CAC -6.795 0.679 0.154 ETKDGv3 8
NKA CAD -6.716 1.491 1.439 ETKDGv3 9
NKA CAF -5.427 2.334 1.630 ETKDGv3 10
NKA OAK -4.311 1.906 0.845 ETKDGv3 11
NKA CAL -3.535 0.785 1.161 ETKDGv3 12
NKA OAM -3.838 0.056 2.145 ETKDGv3 13
NKA NAN -2.397 0.473 0.350 ETKDGv3 14
NKA CAO -1.592 -0.738 0.548 ETKDGv3 15
NKA CAW -2.303 -1.967 -0.077 ETKDGv3 16
NKA CBH -2.442 -1.907 -1.580 ETKDGv3 17
NKA CBI -3.369 -1.120 -2.158 ETKDGv3 18
NKA CBJ -3.486 -1.058 -3.630 ETKDGv3 19
NKA CBK -2.674 -1.793 -4.398 ETKDGv3 20
NKA FBU -2.779 -1.737 -5.749 ETKDGv3 21
NKA CBL -1.665 -2.673 -3.775 ETKDGv3 22
NKA CBM -1.556 -2.732 -2.442 ETKDGv3 23
NKA CAT -0.135 -0.496 0.062 ETKDGv3 24
NKA OBO -0.114 -0.234 -1.318 ETKDGv3 25
NKA CAP 0.820 -1.665 0.386 ETKDGv3 26
NKA NAQ 0.838 -1.956 1.831 ETKDGv3 27
NKA CBP 0.860 -3.384 2.224 ETKDGv3 28
NKA CBQ 1.890 -4.283 1.485 ETKDGv3 29
NKA CBS 3.333 -3.820 1.687 ETKDGv3 30
NKA CBR 1.741 -5.733 1.968 ETKDGv3 31
NKA SAR 1.794 -0.859 2.819 ETKDGv3 32
NKA OAU 2.079 -1.486 4.156 ETKDGv3 33
NKA OAV 0.982 0.380 3.072 ETKDGv3 34
NKA CAS 3.327 -0.355 2.089 ETKDGv3 35
NKA CAX 3.331 0.650 0.982 ETKDGv3 36
NKA CBB 4.509 -0.818 2.577 ETKDGv3 37
NKA CBA 5.802 -0.381 1.981 ETKDGv3 38
NKA CAZ 5.746 0.492 0.976 ETKDGv3 39
NKA NBE 6.812 1.080 0.247 ETKDGv3 40
NKA CAY 4.512 1.009 0.487 ETKDGv3 41
NKA OBC 4.816 1.898 -0.523 ETKDGv3 42
NKA CBD 6.219 1.877 -0.603 ETKDGv3 43
NKA NBF 6.940 2.679 -1.546 ETKDGv3 44
NKA CBG 8.402 2.645 -1.655 ETKDGv3 45
NKA CBT 8.908 3.891 -2.390 ETKDGv3 46
NKA CBN 8.845 1.376 -2.389 ETKDGv3 47
NKA H1 -8.778 2.203 1.671 ETKDGv3 48
NKA H2 -7.266 3.747 2.958 ETKDGv3 49
NKA H3 -7.837 4.702 1.528 ETKDGv3 50
NKA H4 -5.193 4.518 1.796 ETKDGv3 51
NKA H5 -5.657 5.087 -0.426 ETKDGv3 52
NKA H6 -5.200 3.421 -0.817 ETKDGv3 53
NKA H7 -8.912 2.641 -0.627 ETKDGv3 54
NKA H8 -7.547 -0.131 0.278 ETKDGv3 55
NKA H9 -5.836 0.194 -0.108 ETKDGv3 56
NKA H10 -6.908 0.854 2.331 ETKDGv3 57
NKA H11 -5.138 2.310 2.707 ETKDGv3 58
NKA H12 -2.165 1.126 -0.433 ETKDGv3 59
NKA H13 -1.530 -0.926 1.642 ETKDGv3 60
NKA H14 -1.770 -2.895 0.216 ETKDGv3 61
NKA H15 -3.317 -2.060 0.370 ETKDGv3 62
NKA H16 -4.040 -0.521 -1.558 ETKDGv3 63
NKA H17 -4.229 -0.415 -4.082 ETKDGv3 64
NKA H18 -1.016 -3.275 -4.399 ETKDGv3 65
NKA H19 -0.820 -3.389 -1.998 ETKDGv3 66
NKA H20 0.227 0.409 0.597 ETKDGv3 67
NKA H21 0.755 0.203 -1.518 ETKDGv3 68
NKA H22 0.472 -2.544 -0.190 ETKDGv3 69
NKA H23 1.842 -1.440 0.022 ETKDGv3 70
NKA H24 -0.153 -3.794 2.022 ETKDGv3 71
NKA H25 0.996 -3.485 3.321 ETKDGv3 72
NKA H26 1.681 -4.291 0.396 ETKDGv3 73
NKA H27 4.045 -4.574 1.288 ETKDGv3 74
NKA H28 3.507 -2.886 1.121 ETKDGv3 75
NKA H29 3.548 -3.666 2.766 ETKDGv3 76
NKA H30 1.972 -5.812 3.052 ETKDGv3 77
NKA H31 0.704 -6.092 1.795 ETKDGv3 78
NKA H32 2.430 -6.400 1.406 ETKDGv3 79
NKA H33 2.420 1.082 0.596 ETKDGv3 80
NKA H34 4.533 -1.515 3.403 ETKDGv3 81
NKA H35 6.748 -0.754 2.350 ETKDGv3 82
NKA H36 6.387 3.326 -2.153 ETKDGv3 83
NKA H37 8.848 2.649 -0.636 ETKDGv3 84
NKA H38 8.505 3.926 -3.425 ETKDGv3 85
NKA H39 10.018 3.886 -2.435 ETKDGv3 86
NKA H40 8.584 4.805 -1.848 ETKDGv3 87
NKA H41 8.520 0.474 -1.829 ETKDGv3 88
NKA H42 9.952 1.348 -2.475 ETKDGv3 89
NKA H43 8.402 1.342 -3.407 ETKDGv3 90
#