data_NLG
#
_chem_comp.id NLG
_chem_comp.name N-ACETYL-L-GLUTAMATE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H11 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-12-28
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 189.166
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NLG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GS5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NLG CA CA C 0 1 N N S N N N 32.235 10.774 40.715 -0.438 -0.351 -0.581 CA NLG 1
NLG C C C 0 1 N N N N N N 32.002 9.560 40.196 -1.648 -0.031 -1.420 C NLG 2
NLG OXT OXT O 0 1 N Y N N N N 32.795 8.778 39.354 -1.783 1.186 -1.967 OXT NLG 3
NLG O O O 0 1 N N N N N N 31.047 8.757 40.505 -2.497 -0.872 -1.601 O NLG 4
NLG CB CB C 0 1 N N N N N N 31.615 11.808 39.808 -0.726 -0.008 0.881 CB NLG 5
NLG CG CG C 0 1 N N N N N N 30.040 11.630 39.688 0.502 -0.332 1.732 CG NLG 6
NLG CD CD C 0 1 N N N N N N 29.398 12.025 41.011 0.218 0.005 3.173 CD NLG 7
NLG OE1 OE1 O 0 1 N N N N N N 29.827 12.681 41.976 -0.856 0.459 3.487 OE1 NLG 8
NLG OE2 OE2 O 0 1 N N N N N N 28.273 11.447 41.024 1.159 -0.197 4.108 OE2 NLG 9
NLG C7 C7 C 0 1 N N N N N N 34.525 10.593 41.676 1.515 -0.059 -2.008 C7 NLG 10
NLG C8 C8 C 0 1 N N N N N N 35.827 10.722 41.547 2.690 0.750 -2.492 C8 NLG 11
NLG O7 O7 O 0 1 N N N N N N 34.054 9.818 42.554 1.299 -1.156 -2.478 O7 NLG 12
NLG N2 N2 N 0 1 N N N N N N 33.746 10.909 40.942 0.703 0.435 -1.052 N2 NLG 13
NLG HA HA H 0 1 N N N N N N 31.728 10.832 41.706 -0.207 -1.413 -0.667 HA NLG 14
NLG HXT HXT H 0 1 N N N N N N 32.629 7.917 38.986 -2.560 1.391 -2.505 HXT NLG 15
NLG HBC1 1HBC H 0 0 N N N N N N 32.099 11.807 38.804 -0.957 1.053 0.966 HBC1 NLG 16
NLG HBC2 2HBC H 0 0 N N N N N N 31.881 12.841 40.132 -1.576 -0.593 1.231 HBC2 NLG 17
NLG HGC1 1HGC H 0 0 N N N N N N 29.751 10.603 39.365 0.733 -1.394 1.647 HGC1 NLG 18
NLG HGC2 2HGC H 0 0 N N N N N N 29.613 12.190 38.824 1.352 0.253 1.382 HGC2 NLG 19
NLG HE2 HE2 H 0 1 N N N N N N 27.872 11.693 41.849 0.977 0.019 5.033 HE2 NLG 20
NLG H8C1 1H8C H 0 0 N N N N N N 36.597 10.410 42.272 3.225 0.191 -3.259 H8C1 NLG 21
NLG H8C2 2H8C H 0 0 N N N N N N 36.239 11.399 40.780 2.334 1.692 -2.910 H8C2 NLG 22
NLG H8C3 3H8C H 0 0 N N N N N N 36.012 11.802 41.344 3.360 0.953 -1.657 H8C3 NLG 23
NLG H2 H2 H 0 1 N N N N N N 34.169 11.455 40.192 0.876 1.312 -0.676 H2 NLG 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NLG CA C SING N N 1
NLG CA CB SING N N 2
NLG CA N2 SING N N 3
NLG CA HA SING N N 4
NLG C OXT SING N N 5
NLG C O DOUB N N 6
NLG OXT HXT SING N N 7
NLG CB CG SING N N 8
NLG CB HBC1 SING N N 9
NLG CB HBC2 SING N N 10
NLG CG CD SING N N 11
NLG CG HGC1 SING N N 12
NLG CG HGC2 SING N N 13
NLG CD OE1 DOUB N N 14
NLG CD OE2 SING N N 15
NLG OE2 HE2 SING N N 16
NLG C7 C8 SING N N 17
NLG C7 O7 DOUB N N 18
NLG C7 N2 SING N N 19
NLG C8 H8C1 SING N N 20
NLG C8 H8C2 SING N N 21
NLG C8 H8C3 SING N N 22
NLG N2 H2 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NLG SMILES ACDLabs 10.04 O=C(NC(C(=O)O)CCC(=O)O)C
NLG SMILES_CANONICAL CACTVS 3.341 CC(=O)N[C@@H](CCC(O)=O)C(O)=O
NLG SMILES CACTVS 3.341 CC(=O)N[CH](CCC(O)=O)C(O)=O
NLG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N[C@@H](CCC(=O)O)C(=O)O
NLG SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)NC(CCC(=O)O)C(=O)O
NLG InChI InChI 1.03 InChI=1S/C7H11NO5/c1-4(9)8-5(7(12)13)2-3-6(10)11/h5H,2-3H2,1H3,(H,8,9)(H,10,11)(H,12,13)/t5-/m0/s1
NLG InChIKey InChI 1.03 RFMMMVDNIPUKGG-YFKPBYRVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NLG "SYSTEMATIC NAME" ACDLabs 10.04 "N-acetyl-L-glutamic acid"
NLG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-acetamidopentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NLG 'Create component' 2001-12-28 EBI
NLG 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id NLG
_pdbe_chem_comp_drugbank_details.drugbank_id DB04075
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N-Acetyl-L-Glutamate
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 1188-37-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id NLG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04075
_pdbe_chem_comp_drugbank_classification.parent 'Glutamic acid and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as glutamic acid and derivatives. These are compounds containing glutamic acid or a derivative thereof resulting from reaction of glutamic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
NLG DB04075 'Acetylglutamate kinase' 'Escherichia coli (strain K12)' P0A6C8 unknown 1
NLG DB04075 'Acetylglutamate kinase' 'Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)' Q9HTN2 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NLG CA C 6.897 1.590 1
NLG C C 8.196 2.340 2
NLG OXT O 9.495 1.590 3
NLG O O 8.196 3.840 4
NLG CB C 6.897 0.090 5
NLG CG C 8.196 -0.660 6
NLG CD C 8.196 -2.160 7
NLG OE1 O 9.495 -2.910 8
NLG OE2 O 6.897 -2.910 9
NLG C7 C 4.299 1.590 10
NLG C8 C 4.299 0.090 11
NLG O7 O 3.000 2.340 12
NLG N2 N 5.598 2.340 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NLG CA C SINGLE NONE 1
NLG CA CB SINGLE BEGINDASH 2
NLG CA N2 SINGLE NONE 3
NLG C OXT SINGLE NONE 4
NLG C O DOUBLE NONE 5
NLG CB CG SINGLE NONE 6
NLG CG CD SINGLE NONE 7
NLG CD OE1 DOUBLE NONE 8
NLG CD OE2 SINGLE NONE 9
NLG C7 C8 SINGLE NONE 10
NLG C7 O7 DOUBLE NONE 11
NLG C7 N2 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NLG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NLG peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NLG N2 F1 1
NLG C7 F1 1
NLG O7 F1 1
NLG C8 F1 1
NLG O F2 1
NLG C F2 1
NLG CA F2 1
NLG N2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NLG
_pdbe_chem_comp_rdkit_properties.exactmw 189.064
_pdbe_chem_comp_rdkit_properties.amw 189.167
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 90.238
_pdbe_chem_comp_rdkit_properties.tpsa 103.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.559
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.110
_pdbe_chem_comp_rdkit_properties.chi0v 5.988
_pdbe_chem_comp_rdkit_properties.chi1v 2.718
_pdbe_chem_comp_rdkit_properties.chi2v 0.690
_pdbe_chem_comp_rdkit_properties.chi3v 0.690
_pdbe_chem_comp_rdkit_properties.chi4v 0.336
_pdbe_chem_comp_rdkit_properties.chi0n 16.988
_pdbe_chem_comp_rdkit_properties.chi1n 7.982
_pdbe_chem_comp_rdkit_properties.chi2n 0.690
_pdbe_chem_comp_rdkit_properties.chi3n 0.690
_pdbe_chem_comp_rdkit_properties.chi4n 0.336
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.590
_pdbe_chem_comp_rdkit_properties.kappa1 2.697
_pdbe_chem_comp_rdkit_properties.kappa2 5.126
_pdbe_chem_comp_rdkit_properties.kappa3 5.656
_pdbe_chem_comp_rdkit_properties.Phi 1.064
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NLG UniChem ChEMBL CHEMBL1234751
NLG UniChem DrugBank DB04075
NLG UniChem PDBe NLG
NLG UniChem 'KEGG LIGAND' C00624
NLG UniChem ChEBI 17533
NLG UniChem ZINC ZINC000001532704
NLG UniChem eMolecules 474735
NLG UniChem fdasrs MA61H539YZ
NLG UniChem HMDB HMDB0001138
NLG UniChem NMRShiftDB 20112345
NLG UniChem Nikkaji J37.497K
NLG UniChem BindingDb 50151383
NLG UniChem 'EPA CompTox Dashboard' DTXSID3046534
NLG UniChem MetaboLights MTBLC17533
NLG UniChem BRENDA 103258
NLG UniChem BRENDA 109769
NLG UniChem BRENDA 125564
NLG UniChem BRENDA 20096
NLG UniChem BRENDA 20782
NLG UniChem BRENDA 32923
NLG UniChem BRENDA 33014
NLG UniChem BRENDA 3480
NLG UniChem BRENDA 3794
NLG UniChem BRENDA 47376
NLG UniChem BRENDA 48784
NLG UniChem BRENDA 543
NLG UniChem BRENDA 92180
NLG UniChem ChemicalBook CB6175759
NLG UniChem rxnorm 'ACETYL GLUTAMIC ACID'
NLG UniChem MedChemExpress HY-W015240
NLG UniChem 'Probes And Drugs' PD001625
NLG UniChem SureChEMBL SCHEMBL82128
NLG UniChem 'PubChem TPHARMA' 16179229
NLG UniChem PubChem 70914
NLG UniChem Mcule MCULE-6828522418
NLG UniChem Mcule MCULE-7234857249
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NLG CA 0.152 -0.114 -0.420 ETKDGv3 1
NLG C -0.301 -1.420 -1.012 ETKDGv3 2
NLG OXT 0.626 -2.264 -1.617 ETKDGv3 3
NLG O -1.513 -1.762 -0.947 ETKDGv3 4
NLG CB 0.074 -0.148 1.119 ETKDGv3 5
NLG CG 1.071 -1.143 1.731 ETKDGv3 6
NLG CD 1.002 -1.099 3.224 ETKDGv3 7
NLG OE1 0.198 -1.847 3.842 ETKDGv3 8
NLG OE2 1.796 -0.199 3.928 ETKDGv3 9
NLG C7 -0.543 1.452 -2.294 ETKDGv3 10
NLG C8 -1.428 2.550 -2.785 ETKDGv3 11
NLG O7 0.304 0.938 -3.073 ETKDGv3 12
NLG N2 -0.674 0.977 -0.947 ETKDGv3 13
NLG HA 1.211 0.072 -0.708 ETKDGv3 14
NLG HXT 0.339 -3.150 -2.014 ETKDGv3 15
NLG HBC1 0.304 0.869 1.507 ETKDGv3 16
NLG HBC2 -0.960 -0.409 1.439 ETKDGv3 17
NLG HGC1 2.103 -0.888 1.409 ETKDGv3 18
NLG HGC2 0.845 -2.175 1.385 ETKDGv3 19
NLG HE2 1.750 -0.146 4.939 ETKDGv3 20
NLG H8C1 -1.358 3.421 -2.100 ETKDGv3 21
NLG H8C2 -1.125 2.871 -3.805 ETKDGv3 22
NLG H8C3 -2.479 2.193 -2.815 ETKDGv3 23
NLG H2 -1.394 1.422 -0.333 ETKDGv3 24
#