data_NLZ
#
_chem_comp.id NLZ
_chem_comp.name 2,4-bis(oxidanyl)benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H7 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-06
_chem_comp.pdbx_modified_date 2020-10-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 153.135
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NLZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6TN0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NLZ C10 C1 C 0 1 N N N N N N 40.436 -49.114 -11.074 2.057 0.306 0.013 C10 NLZ 1
NLZ O08 O1 O 0 1 N N N N N N 39.293 -47.619 -13.007 0.634 -2.135 0.026 O08 NLZ 2
NLZ C07 C2 C 0 1 Y N N N N N 39.359 -47.072 -11.764 -0.078 -0.981 0.008 C07 NLZ 3
NLZ C06 C3 C 0 1 Y N N N N N 38.866 -45.804 -11.484 -1.462 -1.019 0.002 C06 NLZ 4
NLZ C05 C4 C 0 1 Y N N N N N 38.967 -45.307 -10.189 -2.188 0.162 -0.016 C05 NLZ 5
NLZ O09 O2 O 0 1 N N N N N N 38.490 -44.067 -9.897 -3.545 0.121 -0.022 O09 NLZ 6
NLZ C04 C5 C 0 1 Y N N N N N 39.557 -46.078 -9.192 -1.532 1.390 -0.028 C04 NLZ 7
NLZ C03 C6 C 0 1 Y N N N N N 40.047 -47.347 -9.482 -0.157 1.440 -0.023 C03 NLZ 8
NLZ C02 C7 C 0 1 Y N N N N N 39.949 -47.848 -10.774 0.585 0.256 0.001 C02 NLZ 9
NLZ O11 O3 O 0 1 N N N N N N 39.807 -49.878 -11.805 2.700 -0.726 0.024 O11 NLZ 10
NLZ N01 N1 N 0 1 N N N N N N 41.606 -49.413 -10.517 2.691 1.495 0.007 N01 NLZ 11
NLZ H08 H1 H 0 1 N N N N N N 39.451 -48.554 -12.951 0.845 -2.481 -0.852 H08 NLZ 12
NLZ H06 H2 H 0 1 N N N N N N 38.410 -45.211 -12.263 -1.976 -1.969 0.012 H06 NLZ 13
NLZ H09 H3 H 0 1 N N N N N N 38.635 -43.880 -8.977 -3.942 0.121 0.860 H09 NLZ 14
NLZ H04 H4 H 0 1 N N N N N N 39.635 -45.689 -8.188 -2.105 2.305 -0.042 H04 NLZ 15
NLZ H03 H5 H 0 1 N N N N N N 40.503 -47.942 -8.704 0.348 2.395 -0.033 H03 NLZ 16
NLZ H01 H6 H 0 1 N N N N N N 42.026 -50.305 -10.684 2.178 2.318 -0.006 H01 NLZ 17
NLZ H1A H7 H 0 1 N N N N N N 42.066 -48.746 -9.932 3.661 1.528 0.015 H1A NLZ 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NLZ O08 C07 SING N N 1
NLZ O11 C10 DOUB N N 2
NLZ C07 C06 DOUB Y N 3
NLZ C07 C02 SING Y N 4
NLZ C06 C05 SING Y N 5
NLZ C10 C02 SING N N 6
NLZ C10 N01 SING N N 7
NLZ C02 C03 DOUB Y N 8
NLZ C05 O09 SING N N 9
NLZ C05 C04 DOUB Y N 10
NLZ C03 C04 SING Y N 11
NLZ O08 H08 SING N N 12
NLZ C06 H06 SING N N 13
NLZ O09 H09 SING N N 14
NLZ C04 H04 SING N N 15
NLZ C03 H03 SING N N 16
NLZ N01 H01 SING N N 17
NLZ N01 H1A SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NLZ InChI InChI 1.03 InChI=1S/C7H7NO3/c8-7(11)5-2-1-4(9)3-6(5)10/h1-3,9-10H,(H2,8,11)
NLZ InChIKey InChI 1.03 IIUJCQYKTGNRHH-UHFFFAOYSA-N
NLZ SMILES_CANONICAL CACTVS 3.385 NC(=O)c1ccc(O)cc1O
NLZ SMILES CACTVS 3.385 NC(=O)c1ccc(O)cc1O
NLZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1O)O)C(=O)N
NLZ SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1O)O)C(=O)N
#
_pdbx_chem_comp_identifier.comp_id NLZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2,4-bis(oxidanyl)benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NLZ 'Create component' 2019-12-06 PDBE
NLZ 'Initial release' 2020-10-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NLZ C10 C 6.404 2.393 1
NLZ O08 O 3.805 0.892 2
NLZ C07 C 5.104 0.142 3
NLZ C06 C 5.104 -1.357 4
NLZ C05 C 6.404 -2.107 5
NLZ O09 O 6.404 -3.607 6
NLZ C04 C 7.702 -1.357 7
NLZ C03 C 7.702 0.142 8
NLZ C02 C 6.404 0.892 9
NLZ O11 O 5.104 3.143 10
NLZ N01 N 7.702 3.143 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NLZ O08 C07 SINGLE NONE 1
NLZ O11 C10 DOUBLE NONE 2
NLZ C07 C06 DOUBLE NONE 3
NLZ C07 C02 SINGLE NONE 4
NLZ C06 C05 SINGLE NONE 5
NLZ C10 C02 SINGLE NONE 6
NLZ C10 N01 SINGLE NONE 7
NLZ C02 C03 DOUBLE NONE 8
NLZ C05 O09 SINGLE NONE 9
NLZ C05 C04 DOUBLE NONE 10
NLZ C03 C04 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NLZ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NLZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NLZ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NLZ C07 S1 1
NLZ C06 S1 1
NLZ C05 S1 1
NLZ C04 S1 1
NLZ C03 S1 1
NLZ C02 S1 1
NLZ N01 F1 1
NLZ C10 F1 1
NLZ O11 F1 1
NLZ C02 F1 1
NLZ C07 F2 1
NLZ C06 F2 1
NLZ C05 F2 1
NLZ C04 F2 1
NLZ C03 F2 1
NLZ C02 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NLZ
_pdbe_chem_comp_rdkit_properties.exactmw 153.043
_pdbe_chem_comp_rdkit_properties.amw 153.137
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 73.010
_pdbe_chem_comp_rdkit_properties.tpsa 83.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.783
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.803
_pdbe_chem_comp_rdkit_properties.chi0v 5.172
_pdbe_chem_comp_rdkit_properties.chi1v 2.586
_pdbe_chem_comp_rdkit_properties.chi2v 0.969
_pdbe_chem_comp_rdkit_properties.chi3v 0.969
_pdbe_chem_comp_rdkit_properties.chi4v 0.523
_pdbe_chem_comp_rdkit_properties.chi0n 12.172
_pdbe_chem_comp_rdkit_properties.chi1n 5.797
_pdbe_chem_comp_rdkit_properties.chi2n 0.969
_pdbe_chem_comp_rdkit_properties.chi3n 0.969
_pdbe_chem_comp_rdkit_properties.chi4n 0.523
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 2.406
_pdbe_chem_comp_rdkit_properties.kappa2 2.494
_pdbe_chem_comp_rdkit_properties.kappa3 1.403
_pdbe_chem_comp_rdkit_properties.Phi 0.546
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NLZ UniChem PDBe NLZ
NLZ UniChem ZINC ZINC000001690428
NLZ UniChem eMolecules 6203127
NLZ UniChem 'PubChem TPHARMA' 16068837
NLZ UniChem NMRShiftDB 20208326
NLZ UniChem ACTor 3147-45-3
NLZ UniChem ChemicalBook CB0267944
NLZ UniChem 'EPA CompTox Dashboard' DTXSID8062868
NLZ UniChem SureChEMBL SCHEMBL1329143
NLZ UniChem PubChem 76601
NLZ UniChem Nikkaji J76.344F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NLZ C10 2.151 0.448 -0.093 ETKDGv3 1
NLZ O08 0.126 2.541 0.358 ETKDGv3 2
NLZ C07 -0.301 1.232 0.131 ETKDGv3 3
NLZ C06 -1.614 0.949 0.115 ETKDGv3 4
NLZ C05 -2.081 -0.434 -0.105 ETKDGv3 5
NLZ O09 -3.448 -0.702 -0.114 ETKDGv3 6
NLZ C04 -1.187 -1.414 -0.295 ETKDGv3 7
NLZ C03 0.259 -1.114 -0.286 ETKDGv3 8
NLZ C02 0.698 0.144 -0.080 ETKDGv3 9
NLZ O11 2.547 1.593 -0.441 ETKDGv3 10
NLZ N01 3.120 -0.530 0.292 ETKDGv3 11
NLZ H08 -0.528 3.300 0.509 ETKDGv3 12
NLZ H06 -2.345 1.733 0.271 ETKDGv3 13
NLZ H09 -3.808 -1.638 -0.263 ETKDGv3 14
NLZ H04 -1.515 -2.432 -0.461 ETKDGv3 15
NLZ H03 0.948 -1.925 -0.480 ETKDGv3 16
NLZ H01 2.840 -1.441 0.718 ETKDGv3 17
NLZ H1A 4.139 -0.310 0.224 ETKDGv3 18
#