data_NQH
#
_chem_comp.id NQH
_chem_comp.name 2-chloranyl-4-(cyclopropylmethylamino)pyridine-3-carbonitrile
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H10 Cl N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-11
_chem_comp.pdbx_modified_date 2020-04-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.659
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NQH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6TOG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NQH N1 N1 N 0 1 N N N N N N -26.929 26.345 -13.704 -1.093 -2.885 -0.094 N1 NQH 1
NQH C2 C1 C 0 1 Y N N N N N -26.711 31.115 -13.378 0.079 1.788 -0.036 C2 NQH 2
NQH C3 C2 C 0 1 Y N N N N N -26.775 29.751 -13.122 0.133 0.395 -0.071 C3 NQH 3
NQH C7 C3 C 0 1 N N N N N N -28.412 30.405 -10.380 3.783 -0.473 -0.246 C7 NQH 4
NQH C6 C4 C 0 1 N N N N N N -26.960 30.155 -10.728 2.599 0.493 -0.173 C6 NQH 5
NQH C5 C5 C 0 1 N N N N N N -26.816 27.453 -13.939 -1.088 -1.750 -0.068 C5 NQH 6
NQH C4 C6 C 0 1 Y N N N N N -26.685 28.860 -14.181 -1.081 -0.318 -0.036 C4 NQH 7
NQH C9 C7 C 0 1 N N N N N N -28.715 31.253 -9.218 5.179 0.132 -0.409 C9 NQH 8
NQH C C8 C 0 1 Y N N N N N -26.504 29.401 -15.446 -2.279 0.398 0.031 C NQH 9
NQH CL CL1 CL 0 0 N N N N N N -26.110 28.344 -16.745 -3.790 -0.454 0.075 CL NQH 10
NQH C1 C9 C 0 1 Y N N N N N -26.579 31.525 -14.684 -1.148 2.412 0.035 C1 NQH 11
NQH N N2 N 0 1 Y N N N N N -26.483 30.688 -15.720 -2.271 1.716 0.062 N NQH 12
NQH N2 N3 N 0 1 N N N N N N -26.901 29.271 -11.873 1.348 -0.269 -0.138 N2 NQH 13
NQH C8 C10 C 0 1 N N N N N N -28.967 31.745 -10.581 4.762 -0.480 0.930 C8 NQH 14
NQH H1 H1 H 0 1 N N N N N N -26.763 31.834 -12.573 0.988 2.371 -0.060 H1 NQH 15
NQH H2 H2 H 0 1 N N N N N N -29.094 29.561 -10.559 3.585 -1.423 -0.742 H2 NQH 16
NQH H3 H3 H 0 1 N N N N N N -26.450 29.687 -9.873 2.680 1.100 0.729 H3 NQH 17
NQH H4 H4 H 0 1 N N N N N N -26.469 31.109 -10.971 2.605 1.141 -1.049 H4 NQH 18
NQH H5 H5 H 0 1 N N N N N N -27.897 31.681 -8.620 5.899 -0.421 -1.013 H5 NQH 19
NQH H6 H6 H 0 1 N N N N N N -29.559 31.002 -8.558 5.254 1.218 -0.465 H6 NQH 20
NQH H7 H7 H 0 1 N N N N N N -26.551 32.586 -14.883 -1.192 3.491 0.062 H7 NQH 21
NQH H8 H8 H 0 1 N N N N N N -27.745 28.735 -11.860 1.370 -1.238 -0.161 H8 NQH 22
NQH H9 H9 H 0 1 N N N N N N -28.338 32.543 -11.002 4.563 0.203 1.755 H9 NQH 23
NQH H10 H10 H 0 1 N N N N N N -30.000 31.864 -10.940 5.209 -1.435 1.207 H10 NQH 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NQH CL C SING N N 1
NQH N C DOUB Y N 2
NQH N C1 SING Y N 3
NQH C C4 SING Y N 4
NQH C1 C2 DOUB Y N 5
NQH C4 C5 SING N N 6
NQH C4 C3 DOUB Y N 7
NQH C5 N1 TRIP N N 8
NQH C2 C3 SING Y N 9
NQH C3 N2 SING N N 10
NQH N2 C6 SING N N 11
NQH C6 C7 SING N N 12
NQH C8 C7 SING N N 13
NQH C8 C9 SING N N 14
NQH C7 C9 SING N N 15
NQH C2 H1 SING N N 16
NQH C7 H2 SING N N 17
NQH C6 H3 SING N N 18
NQH C6 H4 SING N N 19
NQH C9 H5 SING N N 20
NQH C9 H6 SING N N 21
NQH C1 H7 SING N N 22
NQH N2 H8 SING N N 23
NQH C8 H9 SING N N 24
NQH C8 H10 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NQH InChI InChI 1.03 InChI=1S/C10H10ClN3/c11-10-8(5-12)9(3-4-13-10)14-6-7-1-2-7/h3-4,7H,1-2,6H2,(H,13,14)
NQH InChIKey InChI 1.03 NLBNRXHKCJFZBY-UHFFFAOYSA-N
NQH SMILES_CANONICAL CACTVS 3.385 "Clc1nccc(NCC2CC2)c1C#N"
NQH SMILES CACTVS 3.385 "Clc1nccc(NCC2CC2)c1C#N"
NQH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(c(c1NCC2CC2)C#N)Cl"
NQH SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(c(c1NCC2CC2)C#N)Cl"
#
_pdbx_chem_comp_identifier.comp_id NQH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-chloranyl-4-(cyclopropylmethylamino)pyridine-3-carbonitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NQH 'Create component' 2019-12-11 PDBE
NQH 'Initial release' 2020-04-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NQH N1 N 3.000 -0.275 1
NQH C2 C 8.196 -1.774 2
NQH C3 C 6.897 -1.024 3
NQH C7 C 8.196 2.725 4
NQH C6 C 8.196 1.226 5
NQH C5 C 4.299 -1.024 6
NQH C4 C 5.598 -1.774 7
NQH C9 C 7.446 4.024 8
NQH C C 5.598 -3.275 9
NQH CL Cl 4.299 -4.024 10
NQH C1 C 8.196 -3.275 11
NQH N N 6.897 -4.024 12
NQH N2 N 6.897 0.475 13
NQH C8 C 8.946 4.024 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NQH CL C SINGLE NONE 1
NQH N C DOUBLE NONE 2
NQH N C1 SINGLE NONE 3
NQH C C4 SINGLE NONE 4
NQH C1 C2 DOUBLE NONE 5
NQH C4 C5 SINGLE NONE 6
NQH C4 C3 DOUBLE NONE 7
NQH C5 N1 TRIPLE NONE 8
NQH C2 C3 SINGLE NONE 9
NQH C3 N2 SINGLE NONE 10
NQH N2 C6 SINGLE NONE 11
NQH C6 C7 SINGLE NONE 12
NQH C8 C7 SINGLE NONE 13
NQH C8 C9 SINGLE NONE 14
NQH C7 C9 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NQH MurckoScaffold S1 scaffold c1cc(NCC2CC2)ccn1 InChI=1S/C9H12N2/c1-2-8(1)7-11-9-3-5-10-6-4-9/h3-6,8H,1-2,7H2,(H,10,11) UOKWSTGIEPRIIN-UHFFFAOYSA-N
NQH cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
NQH pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NQH C2 S1 1
NQH C3 S1 1
NQH C7 S1 1
NQH C6 S1 1
NQH C4 S1 1
NQH C9 S1 1
NQH C S1 1
NQH C1 S1 1
NQH N S1 1
NQH N2 S1 1
NQH C8 S1 1
NQH C7 F1 1
NQH C8 F1 1
NQH C9 F1 1
NQH C F2 1
NQH C4 F2 1
NQH C3 F2 1
NQH C2 F2 1
NQH C1 F2 1
NQH N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NQH
_pdbe_chem_comp_rdkit_properties.exactmw 207.056
_pdbe_chem_comp_rdkit_properties.amw 207.664
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 101.823
_pdbe_chem_comp_rdkit_properties.tpsa 48.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.993
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.086
_pdbe_chem_comp_rdkit_properties.chi0v 7.476
_pdbe_chem_comp_rdkit_properties.chi1v 3.935
_pdbe_chem_comp_rdkit_properties.chi2v 1.686
_pdbe_chem_comp_rdkit_properties.chi3v 1.686
_pdbe_chem_comp_rdkit_properties.chi4v 0.902
_pdbe_chem_comp_rdkit_properties.chi0n 16.720
_pdbe_chem_comp_rdkit_properties.chi1n 8.504
_pdbe_chem_comp_rdkit_properties.chi2n 1.413
_pdbe_chem_comp_rdkit_properties.chi3n 1.413
_pdbe_chem_comp_rdkit_properties.chi4n 0.728
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.270
_pdbe_chem_comp_rdkit_properties.kappa1 3.110
_pdbe_chem_comp_rdkit_properties.kappa2 3.850
_pdbe_chem_comp_rdkit_properties.kappa3 1.966
_pdbe_chem_comp_rdkit_properties.Phi 0.855
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NQH UniChem ChEMBL CHEMBL4464160
NQH UniChem PDBe NQH
NQH UniChem SureChEMBL SCHEMBL23388963
NQH UniChem PubChem 146020593
NQH UniChem BindingDb 50511611
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NQH N1 -0.758 -3.148 -0.895 ETKDGv3 1
NQH C2 -2.050 1.196 0.610 ETKDGv3 2
NQH C3 -1.353 0.204 0.009 ETKDGv3 3
NQH C7 2.159 0.783 -0.655 ETKDGv3 4
NQH C6 0.969 0.225 -1.426 ETKDGv3 5
NQH C5 -1.271 -2.237 -0.435 ETKDGv3 6
NQH C4 -1.918 -1.115 0.160 ETKDGv3 7
NQH C9 2.652 0.206 0.586 ETKDGv3 8
NQH C -3.066 -1.279 0.865 ETKDGv3 9
NQH CL -3.796 -2.878 1.081 ETKDGv3 10
NQH C1 -3.233 0.976 1.330 ETKDGv3 11
NQH N -3.714 -0.259 1.441 ETKDGv3 12
NQH N2 -0.176 0.215 -0.719 ETKDGv3 13
NQH C8 3.441 -0.046 -0.652 ETKDGv3 14
NQH H1 -1.727 2.224 0.570 ETKDGv3 15
NQH H2 2.363 1.871 -0.846 ETKDGv3 16
NQH H3 1.271 -0.797 -1.858 ETKDGv3 17
NQH H4 0.931 0.830 -2.395 ETKDGv3 18
NQH H5 3.121 0.912 1.330 ETKDGv3 19
NQH H6 2.231 -0.683 1.074 ETKDGv3 20
NQH H7 -3.736 1.813 1.783 ETKDGv3 21
NQH H8 -0.076 1.562 -0.580 ETKDGv3 22
NQH H9 4.400 0.451 -0.852 ETKDGv3 23
NQH H10 3.335 -1.026 -1.186 ETKDGv3 24
#