data_NRH
#
_chem_comp.id NRH
_chem_comp.name Norharmane
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H8 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 9H-beta-carboline
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-25
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 168.195
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NRH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4K9I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NRH C5 C5 C 0 1 Y N N N N N -5.675 -10.343 -16.269 -1.698 1.483 -0.000 C5 NRH 1
NRH C6 C6 C 0 1 Y N N N N N -6.610 -11.335 -15.911 -3.024 1.108 -0.003 C6 NRH 2
NRH N1 N1 N 0 1 Y N N N N N -7.529 -11.846 -16.761 -3.372 -0.167 -0.002 N1 NRH 3
NRH C2 C2 C 0 1 Y N N N N N -7.599 -11.428 -18.055 -2.486 -1.141 0.001 C2 NRH 4
NRH C4 C4 C 0 1 Y N N N N N -5.724 -9.884 -17.585 -0.720 0.488 -0.003 C4 NRH 5
NRH C9 C9 C 0 1 Y N N N N N -4.943 -8.888 -18.330 0.751 0.484 -0.001 C9 NRH 6
NRH C10 C10 C 0 1 Y N N N N N -3.882 -8.057 -17.967 1.715 1.490 0.004 C10 NRH 7
NRH C11 C11 C 0 1 Y N N N N N -3.361 -7.196 -18.952 3.052 1.158 0.004 C11 NRH 8
NRH C3 C3 C 0 1 Y N N N N N -6.714 -10.446 -18.511 -1.125 -0.858 0.004 C3 NRH 9
NRH N7 N7 N 0 1 Y N N N N N -6.526 -9.801 -19.698 0.007 -1.651 0.008 N7 NRH 10
NRH C8 C8 C 0 1 Y N N N N N -5.509 -8.882 -19.700 1.144 -0.863 -0.005 C8 NRH 11
NRH C13 C13 C 0 1 Y N N N N N -4.943 -8.016 -20.650 2.500 -1.178 -0.007 C13 NRH 12
NRH C12 C12 C 0 1 Y N N N N N -3.885 -7.194 -20.262 3.442 -0.173 -0.001 C12 NRH 13
NRH H1 H1 H 0 1 N N N N N N -4.957 -9.958 -15.560 -1.421 2.527 -0.001 H1 NRH 14
NRH H2 H2 H 0 1 N N N N N N -6.591 -11.709 -14.898 -3.792 1.869 -0.005 H2 NRH 15
NRH H3 H3 H 0 1 N N N N N N -8.333 -11.852 -18.724 -2.819 -2.168 0.002 H3 NRH 16
NRH H4 H4 H 0 1 N N N N N N -3.475 -8.074 -16.967 1.415 2.528 0.007 H4 NRH 17
NRH H5 H5 H 0 1 N N N N N N -2.550 -6.529 -18.701 3.800 1.937 0.007 H5 NRH 18
NRH H6 H6 H 0 1 N N N N N N -7.087 -9.985 -20.505 0.004 -2.621 0.009 H6 NRH 19
NRH H7 H7 H 0 1 N N N N N N -5.320 -7.987 -21.662 2.813 -2.212 -0.011 H7 NRH 20
NRH H8 H8 H 0 1 N N N N N N -3.450 -6.529 -20.994 4.492 -0.424 -0.003 H8 NRH 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NRH C13 C12 DOUB Y N 1
NRH C13 C8 SING Y N 2
NRH C12 C11 SING Y N 3
NRH C8 N7 SING Y N 4
NRH C8 C9 DOUB Y N 5
NRH N7 C3 SING Y N 6
NRH C11 C10 DOUB Y N 7
NRH C3 C2 SING Y N 8
NRH C3 C4 DOUB Y N 9
NRH C9 C10 SING Y N 10
NRH C9 C4 SING Y N 11
NRH C2 N1 DOUB Y N 12
NRH C4 C5 SING Y N 13
NRH N1 C6 SING Y N 14
NRH C5 C6 DOUB Y N 15
NRH C5 H1 SING N N 16
NRH C6 H2 SING N N 17
NRH C2 H3 SING N N 18
NRH C10 H4 SING N N 19
NRH C11 H5 SING N N 20
NRH N7 H6 SING N N 21
NRH C13 H7 SING N N 22
NRH C12 H8 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NRH SMILES ACDLabs 12.01 n3ccc2c1c(cccc1)nc2c3
NRH InChI InChI 1.03 InChI=1S/C11H8N2/c1-2-4-10-8(3-1)9-5-6-12-7-11(9)13-10/h1-7,13H
NRH InChIKey InChI 1.03 AIFRHYZBTHREPW-UHFFFAOYSA-N
NRH SMILES_CANONICAL CACTVS 3.370 "[nH]1c2ccccc2c3ccncc13"
NRH SMILES CACTVS 3.370 "[nH]1c2ccccc2c3ccncc13"
NRH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c3ccncc3[nH]2
NRH SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c3ccncc3[nH]2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NRH "SYSTEMATIC NAME" ACDLabs 12.01 9H-beta-carboline
NRH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 9H-pyrido[3,4-b]indole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NRH 'Create component' 2013-04-25 RCSB
NRH 'Initial release' 2013-05-22 RCSB
NRH 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NRH
_pdbx_chem_comp_synonyms.name 9H-beta-carboline
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id NRH
_pdbe_chem_comp_synonyms.name 9H-beta-carboline
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NRH C5 C 5.014 -2.208 1
NRH C6 C 3.483 -1.895 2
NRH N1 N 3.000 -0.409 3
NRH C2 C 4.054 0.745 4
NRH C4 C 6.041 -1.031 5
NRH C9 C 7.541 -1.031 6
NRH C10 C 8.569 -2.208 7
NRH C11 C 10.099 -1.895 8
NRH C3 C 5.577 0.396 9
NRH N7 N 6.791 1.278 10
NRH C8 C 8.005 0.396 11
NRH C13 C 9.528 0.745 12
NRH C12 C 10.582 -0.409 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NRH C13 C12 DOUBLE NONE 1
NRH C13 C8 SINGLE NONE 2
NRH C12 C11 SINGLE NONE 3
NRH C8 N7 SINGLE NONE 4
NRH C8 C9 DOUBLE NONE 5
NRH N7 C3 SINGLE NONE 6
NRH C11 C10 DOUBLE NONE 7
NRH C3 C2 DOUBLE NONE 8
NRH C3 C4 SINGLE NONE 9
NRH C9 C10 SINGLE NONE 10
NRH C9 C4 SINGLE NONE 11
NRH C2 N1 SINGLE NONE 12
NRH C4 C5 DOUBLE NONE 13
NRH N1 C6 DOUBLE NONE 14
NRH C5 C6 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NRH MurckoScaffold S1 scaffold 'c1ccc2c(c1)[nH]c1cnccc12' InChI=1S/C11H8N2/c1-2-4-10-8(3-1)9-5-6-12-7-11(9)13-10/h1-7,13H AIFRHYZBTHREPW-UHFFFAOYSA-N
NRH indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
NRH phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NRH pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
NRH pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NRH C5 S1 1
NRH C6 S1 1
NRH N1 S1 1
NRH C2 S1 1
NRH C4 S1 1
NRH C9 S1 1
NRH C10 S1 1
NRH C11 S1 1
NRH C3 S1 1
NRH N7 S1 1
NRH C8 S1 1
NRH C13 S1 1
NRH C12 S1 1
NRH C8 F1 1
NRH C9 F1 1
NRH C4 F1 1
NRH C3 F1 1
NRH N7 F1 1
NRH C10 F1 1
NRH C11 F1 1
NRH C12 F1 1
NRH C13 F1 1
NRH C9 F2 1
NRH C8 F2 1
NRH C13 F2 1
NRH C12 F2 1
NRH C11 F2 1
NRH C10 F2 1
NRH C6 F3 1
NRH C5 F3 1
NRH C4 F3 1
NRH C3 F3 1
NRH C2 F3 1
NRH N1 F3 1
NRH C3 F4 1
NRH C4 F4 1
NRH C9 F4 1
NRH C8 F4 1
NRH N7 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NRH
_pdbe_chem_comp_rdkit_properties.exactmw 168.069
_pdbe_chem_comp_rdkit_properties.amw 168.199
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 86.521
_pdbe_chem_comp_rdkit_properties.tpsa 28.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.859
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.188
_pdbe_chem_comp_rdkit_properties.chi0v 6.394
_pdbe_chem_comp_rdkit_properties.chi1v 3.644
_pdbe_chem_comp_rdkit_properties.chi2v 1.777
_pdbe_chem_comp_rdkit_properties.chi3v 1.777
_pdbe_chem_comp_rdkit_properties.chi4v 1.224
_pdbe_chem_comp_rdkit_properties.chi0n 14.394
_pdbe_chem_comp_rdkit_properties.chi1n 7.592
_pdbe_chem_comp_rdkit_properties.chi2n 1.777
_pdbe_chem_comp_rdkit_properties.chi3n 1.777
_pdbe_chem_comp_rdkit_properties.chi4n 1.224
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.830
_pdbe_chem_comp_rdkit_properties.kappa1 2.578
_pdbe_chem_comp_rdkit_properties.kappa2 2.327
_pdbe_chem_comp_rdkit_properties.kappa3 0.855
_pdbe_chem_comp_rdkit_properties.Phi 0.461
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NRH UniChem ChEMBL CHEMBL275224
NRH UniChem PDBe NRH
NRH UniChem 'Guide to Pharmacology' 8222
NRH UniChem 'PubChem DOTF' 12015776
NRH UniChem ChEBI 109895
NRH UniChem ZINC ZINC000000066039
NRH UniChem fdasrs 94HMA1I78O
NRH UniChem HMDB HMDB0012897
NRH UniChem NMRShiftDB 88457
NRH UniChem LINCS LSM-19021
NRH UniChem ACTor 244-63-3
NRH UniChem Recon CE3087
NRH UniChem Nikkaji J10.931B
NRH UniChem BindingDb 50013811
NRH UniChem 'EPA CompTox Dashboard' DTXSID2021070
NRH UniChem MetaboLights MTBLC109895
NRH UniChem BRENDA 16543
NRH UniChem BRENDA 2303
NRH UniChem BRENDA 25822
NRH UniChem ChemicalBook CB5431618
NRH UniChem MedChemExpress HY-W008566
NRH UniChem 'Probes And Drugs' PD001542
NRH UniChem eMolecules 592796
NRH UniChem SureChEMBL SCHEMBL25834
NRH UniChem 'PubChem TPHARMA' 14843142
NRH UniChem PubChem 64961
NRH UniChem Mcule MCULE-7379210172
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NRH C5 -1.871 -1.383 0.105 ETKDGv3 1
NRH C6 -3.301 -0.969 0.107 ETKDGv3 2
NRH N1 -3.626 0.301 0.044 ETKDGv3 3
NRH C2 -2.629 1.346 -0.028 ETKDGv3 4
NRH C4 -0.969 -0.405 0.038 ETKDGv3 5
NRH C9 0.485 -0.398 0.013 ETKDGv3 6
NRH C10 1.446 -1.512 0.057 ETKDGv3 7
NRH C11 2.758 -1.222 0.020 ETKDGv3 8
NRH C3 -1.347 0.984 -0.030 ETKDGv3 9
NRH N7 -0.191 1.810 -0.094 ETKDGv3 10
NRH C8 0.892 0.872 -0.062 ETKDGv3 11
NRH C13 2.327 1.202 -0.103 ETKDGv3 12
NRH C12 3.218 0.195 -0.064 ETKDGv3 13
NRH H1 -1.581 -2.424 0.156 ETKDGv3 14
NRH H2 -4.077 -1.720 0.160 ETKDGv3 15
NRH H3 -2.919 2.387 -0.080 ETKDGv3 16
NRH H4 1.106 -2.538 0.118 ETKDGv3 17
NRH H5 3.489 -2.020 0.050 ETKDGv3 18
NRH H6 -0.142 2.851 -0.151 ETKDGv3 19
NRH H7 2.655 2.231 -0.164 ETKDGv3 20
NRH H8 4.278 0.412 -0.093 ETKDGv3 21
#