data_NSM
#
_chem_comp.id NSM
_chem_comp.name NITROSOMETHANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C H3 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-11-10
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 45.041
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NSM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NSM O1 O1 O 0 1 N N N N N N -0.019 5.766 17.667 -1.497 2.284 0.589 O1 NSM 1
NSM N N N 0 1 N N N N N N -0.387 5.103 16.716 -0.355 2.066 0.142 N NSM 2
NSM C1 C1 C 0 1 N N N N N N -0.503 3.635 16.799 0.238 0.839 0.659 C1 NSM 3
NSM H11 1H1 H 0 1 N N N N N N -0.532 3.211 15.784 1.324 0.944 0.722 H11 NSM 4
NSM H12 2H1 H 0 1 N N N N N N 0.364 3.229 17.341 -0.000 0.000 0.000 H12 NSM 5
NSM H13 3H1 H 0 1 N N N N N N -1.427 3.370 17.333 -0.155 0.627 1.657 H13 NSM 6
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NSM O1 N DOUB N N 1
NSM N C1 SING N N 2
NSM C1 H11 SING N N 3
NSM C1 H12 SING N N 4
NSM C1 H13 SING N N 5
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NSM SMILES ACDLabs 10.04 O=NC
NSM SMILES_CANONICAL CACTVS 3.341 CN=O
NSM SMILES CACTVS 3.341 CN=O
NSM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN=O
NSM SMILES "OpenEye OEToolkits" 1.5.0 CN=O
NSM InChI InChI 1.03 InChI=1S/CH3NO/c1-2-3/h1H3
NSM InChIKey InChI 1.03 IMHRONYAKYWGCC-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NSM "SYSTEMATIC NAME" ACDLabs 10.04 nitrosomethane
NSM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 nitrosomethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NSM 'Create component' 2006-11-10 RCSB
NSM 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NSM O1 O 5.598 0.375 1
NSM N N 4.299 -0.375 2
NSM C1 C 3.000 0.375 3
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NSM O1 N DOUBLE NONE 1
NSM N C1 SINGLE NONE 2
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id NSM
_pdbe_chem_comp_rdkit_properties.exactmw 45.021
_pdbe_chem_comp_rdkit_properties.amw 45.041
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 3
_pdbe_chem_comp_rdkit_properties.NumAtoms 6
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 22.649
_pdbe_chem_comp_rdkit_properties.tpsa 29.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.383
_pdbe_chem_comp_rdkit_properties.CrippenMR 11.719
_pdbe_chem_comp_rdkit_properties.chi0v 1.355
_pdbe_chem_comp_rdkit_properties.chi1v 0.406
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 4.355
_pdbe_chem_comp_rdkit_properties.chi1n 1.906
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.400
_pdbe_chem_comp_rdkit_properties.kappa1 0.315
_pdbe_chem_comp_rdkit_properties.kappa2 1.600
_pdbe_chem_comp_rdkit_properties.kappa3 1.600
_pdbe_chem_comp_rdkit_properties.Phi 0.168
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NSM UniChem PDBe NSM
NSM UniChem SureChEMBL SCHEMBL128461
NSM UniChem HMDB HMDB0255662
NSM UniChem 'EPA CompTox Dashboard' DTXSID60235598
NSM UniChem PubChem 70075
NSM UniChem ACTor 865-40-7
NSM UniChem Nikkaji J102.133H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NSM O1 1.849 0.183 0.078 ETKDGv3 1
NSM N 0.911 -0.450 -0.300 ETKDGv3 2
NSM C1 -0.428 -0.016 -0.001 ETKDGv3 3
NSM H11 -0.574 0.025 1.099 ETKDGv3 4
NSM H12 -0.605 0.990 -0.438 ETKDGv3 5
NSM H13 -1.153 -0.733 -0.438 ETKDGv3 6
#