data_NZ2
#
_chem_comp.id NZ2
_chem_comp.name N-(methylsulfonyl)-N-phenyl-L-alanine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-05
_chem_comp.pdbx_modified_date 2014-05-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 243.280
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NZ2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4KZB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NZ2 C01 C01 C 0 1 N N N N N N 78.670 7.847 26.924 0.588 -1.574 1.997 C01 NZ2 1
NZ2 C02 C02 C 0 1 N N S N N N 78.390 6.686 27.831 1.111 -1.097 0.641 C02 NZ2 2
NZ2 C03 C03 C 0 1 N N N N N N 78.599 5.331 27.215 0.835 -2.148 -0.403 C03 NZ2 3
NZ2 O04 O04 O 0 1 N N N N N N 77.964 4.313 27.623 1.702 -3.157 -0.584 O04 NZ2 4
NZ2 O05 O05 O 0 1 N N N N N N 79.429 5.178 26.272 -0.166 -2.083 -1.076 O05 NZ2 5
NZ2 N06 N06 N 0 1 N N N N N N 79.106 6.815 29.072 0.438 0.150 0.269 N06 NZ2 6
NZ2 C07 C07 C 0 1 Y N N N N N 80.546 6.776 29.088 -0.952 0.177 0.126 C07 NZ2 7
NZ2 C08 C08 C 0 1 Y N N N N N 81.210 5.559 29.124 -1.769 0.010 1.236 C08 NZ2 8
NZ2 C09 C09 C 0 1 Y N N N N N 82.601 5.521 29.122 -3.142 0.038 1.091 C09 NZ2 9
NZ2 C10 C10 C 0 1 Y N N N N N 83.325 6.702 29.117 -3.704 0.231 -0.157 C10 NZ2 10
NZ2 C11 C11 C 0 1 Y N N N N N 82.672 7.922 29.090 -2.892 0.398 -1.265 C11 NZ2 11
NZ2 C12 C12 C 0 1 Y N N N N N 81.280 7.957 29.083 -1.519 0.376 -1.127 C12 NZ2 12
NZ2 S13 S13 S 0 1 N N N N N N 78.314 6.693 30.474 1.323 1.526 0.018 S13 NZ2 13
NZ2 C14 C14 C 0 1 N N N N N N 78.270 5.020 31.050 1.877 1.401 -1.705 C14 NZ2 14
NZ2 O15 O15 O 0 1 N N N N N N 76.966 7.178 30.278 0.381 2.580 0.163 O15 NZ2 15
NZ2 O16 O16 O 0 1 N N N N N N 79.020 7.530 31.426 2.425 1.401 0.906 O16 NZ2 16
NZ2 H1 H1 H 0 1 N N N N N N 78.489 8.788 27.465 0.720 -0.784 2.736 H1 NZ2 17
NZ2 H2 H2 H 0 1 N N N N N N 79.719 7.810 26.594 -0.471 -1.819 1.912 H2 NZ2 18
NZ2 H3 H3 H 0 1 N N N N N N 78.008 7.795 26.047 1.142 -2.460 2.309 H3 NZ2 19
NZ2 H4 H4 H 0 1 N N N N N N 77.319 6.745 28.076 2.185 -0.923 0.707 H4 NZ2 20
NZ2 H5 H5 H 0 1 N N N N N N 78.231 3.551 27.123 1.482 -3.807 -1.265 H5 NZ2 21
NZ2 H6 H6 H 0 1 N N N N N N 80.646 4.638 29.154 -1.332 -0.142 2.212 H6 NZ2 22
NZ2 H7 H7 H 0 1 N N N N N N 83.116 4.572 29.124 -3.779 -0.092 1.954 H7 NZ2 23
NZ2 H8 H8 H 0 1 N N N N N N 84.404 6.671 29.134 -4.778 0.252 -0.268 H8 NZ2 24
NZ2 H9 H9 H 0 1 N N N N N N 83.239 8.841 29.074 -3.334 0.549 -2.239 H9 NZ2 25
NZ2 H10 H10 H 0 1 N N N N N N 80.767 8.907 29.074 -0.886 0.511 -1.991 H10 NZ2 26
NZ2 H11 H11 H 0 1 N N N N N N 77.725 4.974 32.004 1.019 1.498 -2.371 H11 NZ2 27
NZ2 H12 H12 H 0 1 N N N N N N 77.761 4.390 30.306 2.593 2.195 -1.916 H12 NZ2 28
NZ2 H13 H13 H 0 1 N N N N N N 79.297 4.656 31.197 2.351 0.432 -1.864 H13 NZ2 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NZ2 O05 C03 DOUB N N 1
NZ2 C01 C02 SING N N 2
NZ2 C03 O04 SING N N 3
NZ2 C03 C02 SING N N 4
NZ2 C02 N06 SING N N 5
NZ2 N06 C07 SING N N 6
NZ2 N06 S13 SING N N 7
NZ2 C12 C07 DOUB Y N 8
NZ2 C12 C11 SING Y N 9
NZ2 C07 C08 SING Y N 10
NZ2 C11 C10 DOUB Y N 11
NZ2 C10 C09 SING Y N 12
NZ2 C09 C08 DOUB Y N 13
NZ2 O15 S13 DOUB N N 14
NZ2 S13 C14 SING N N 15
NZ2 S13 O16 DOUB N N 16
NZ2 C01 H1 SING N N 17
NZ2 C01 H2 SING N N 18
NZ2 C01 H3 SING N N 19
NZ2 C02 H4 SING N N 20
NZ2 O04 H5 SING N N 21
NZ2 C08 H6 SING N N 22
NZ2 C09 H7 SING N N 23
NZ2 C10 H8 SING N N 24
NZ2 C11 H9 SING N N 25
NZ2 C12 H10 SING N N 26
NZ2 C14 H11 SING N N 27
NZ2 C14 H12 SING N N 28
NZ2 C14 H13 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NZ2 SMILES ACDLabs 12.01 O=S(=O)(N(c1ccccc1)C(C(=O)O)C)C
NZ2 InChI InChI 1.03 InChI=1S/C10H13NO4S/c1-8(10(12)13)11(16(2,14)15)9-6-4-3-5-7-9/h3-8H,1-2H3,(H,12,13)/t8-/m0/s1
NZ2 InChIKey InChI 1.03 RIWCJTAAIOCFTR-QMMMGPOBSA-N
NZ2 SMILES_CANONICAL CACTVS 3.370 C[C@H](N(c1ccccc1)[S](C)(=O)=O)C(O)=O
NZ2 SMILES CACTVS 3.370 C[CH](N(c1ccccc1)[S](C)(=O)=O)C(O)=O
NZ2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@@H](C(=O)O)N(c1ccccc1)S(=O)(=O)C
NZ2 SMILES "OpenEye OEToolkits" 1.7.6 CC(C(=O)O)N(c1ccccc1)S(=O)(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NZ2 "SYSTEMATIC NAME" ACDLabs 12.01 N-(methylsulfonyl)-N-phenyl-L-alanine
NZ2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[methylsulfonyl(phenyl)amino]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NZ2 'Create component' 2013-06-05 RCSB
NZ2 'Initial release' 2014-05-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NZ2 C01 C 6.404 3.375 1
NZ2 C02 C 6.404 1.875 2
NZ2 C03 C 5.104 1.125 3
NZ2 O04 O 5.104 -0.375 4
NZ2 O05 O 3.805 1.875 5
NZ2 N06 N 7.702 1.125 6
NZ2 C07 C 7.702 -0.375 7
NZ2 C08 C 9.002 -1.125 8
NZ2 C09 C 9.002 -2.625 9
NZ2 C10 C 7.702 -3.375 10
NZ2 C11 C 6.404 -2.625 11
NZ2 C12 C 6.404 -1.125 12
NZ2 S13 S 9.002 1.875 13
NZ2 C14 C 9.752 0.576 14
NZ2 O15 O 8.252 3.174 15
NZ2 O16 O 10.301 2.625 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NZ2 O05 C03 DOUBLE NONE 1
NZ2 C02 C01 SINGLE BEGINDASH 2
NZ2 C03 O04 SINGLE NONE 3
NZ2 C03 C02 SINGLE NONE 4
NZ2 C02 N06 SINGLE NONE 5
NZ2 N06 C07 SINGLE NONE 6
NZ2 N06 S13 SINGLE NONE 7
NZ2 C12 C07 DOUBLE NONE 8
NZ2 C12 C11 SINGLE NONE 9
NZ2 C07 C08 SINGLE NONE 10
NZ2 C11 C10 DOUBLE NONE 11
NZ2 C10 C09 SINGLE NONE 12
NZ2 C09 C08 DOUBLE NONE 13
NZ2 O15 S13 DOUBLE NONE 14
NZ2 S13 C14 SINGLE NONE 15
NZ2 S13 O16 DOUBLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NZ2 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NZ2 peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
NZ2 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NZ2 C07 S1 1
NZ2 C08 S1 1
NZ2 C09 S1 1
NZ2 C10 S1 1
NZ2 C11 S1 1
NZ2 C12 S1 1
NZ2 O05 F1 1
NZ2 C03 F1 1
NZ2 C02 F1 1
NZ2 N06 F1 1
NZ2 C07 F2 1
NZ2 C12 F2 1
NZ2 C11 F2 1
NZ2 C10 F2 1
NZ2 C09 F2 1
NZ2 C08 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NZ2
_pdbe_chem_comp_rdkit_properties.exactmw 243.057
_pdbe_chem_comp_rdkit_properties.amw 243.284
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.719
_pdbe_chem_comp_rdkit_properties.tpsa 74.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.545
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.039
_pdbe_chem_comp_rdkit_properties.chi0v 8.305
_pdbe_chem_comp_rdkit_properties.chi1v 5.016
_pdbe_chem_comp_rdkit_properties.chi2v 2.173
_pdbe_chem_comp_rdkit_properties.chi3v 2.173
_pdbe_chem_comp_rdkit_properties.chi4v 1.427
_pdbe_chem_comp_rdkit_properties.chi0n 20.488
_pdbe_chem_comp_rdkit_properties.chi1n 9.984
_pdbe_chem_comp_rdkit_properties.chi2n 1.327
_pdbe_chem_comp_rdkit_properties.chi3n 1.327
_pdbe_chem_comp_rdkit_properties.chi4n 0.780
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.560
_pdbe_chem_comp_rdkit_properties.kappa1 3.464
_pdbe_chem_comp_rdkit_properties.kappa2 4.525
_pdbe_chem_comp_rdkit_properties.kappa3 2.726
_pdbe_chem_comp_rdkit_properties.Phi 0.980
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NZ2 UniChem PDBe NZ2
NZ2 UniChem ZINC ZINC000005676613
NZ2 UniChem PubChem 40554647
NZ2 UniChem Mcule MCULE-2402611125
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NZ2 C01 -1.057 -0.332 2.620 ETKDGv3 1
NZ2 C02 -1.059 -0.768 1.148 ETKDGv3 2
NZ2 C03 -2.455 -0.927 0.604 ETKDGv3 3
NZ2 O04 -2.719 -0.645 -0.734 ETKDGv3 4
NZ2 O05 -3.376 -1.382 1.335 ETKDGv3 5
NZ2 N06 -0.277 0.177 0.330 ETKDGv3 6
NZ2 C07 0.827 -0.305 -0.458 ETKDGv3 7
NZ2 C08 0.658 -1.493 -1.334 ETKDGv3 8
NZ2 C09 1.683 -1.945 -2.066 ETKDGv3 9
NZ2 C10 2.992 -1.264 -2.006 ETKDGv3 10
NZ2 C11 3.154 -0.195 -1.218 ETKDGv3 11
NZ2 C12 2.025 0.306 -0.407 ETKDGv3 12
NZ2 S13 -0.697 1.872 0.266 ETKDGv3 13
NZ2 C14 -0.462 2.499 -1.384 ETKDGv3 14
NZ2 O15 -2.143 2.065 0.631 ETKDGv3 15
NZ2 O16 0.161 2.642 1.230 ETKDGv3 16
NZ2 H1 -1.495 -1.131 3.256 ETKDGv3 17
NZ2 H2 -0.014 -0.154 2.958 ETKDGv3 18
NZ2 H3 -1.645 0.597 2.766 ETKDGv3 19
NZ2 H4 -0.582 -1.772 1.116 ETKDGv3 20
NZ2 H5 -3.647 -0.771 -1.119 ETKDGv3 21
NZ2 H6 -0.300 -1.993 -1.393 ETKDGv3 22
NZ2 H7 1.555 -2.808 -2.707 ETKDGv3 23
NZ2 H8 3.819 -1.633 -2.599 ETKDGv3 24
NZ2 H9 4.113 0.304 -1.171 ETKDGv3 25
NZ2 H10 2.182 1.162 0.235 ETKDGv3 26
NZ2 H11 -1.006 1.855 -2.105 ETKDGv3 27
NZ2 H12 0.618 2.503 -1.636 ETKDGv3 28
NZ2 H13 -0.854 3.535 -1.446 ETKDGv3 29
#