data_NZ4
#
_chem_comp.id NZ4
_chem_comp.name N-(3-acetylphenyl)morpholine-4-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H16 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-29
_chem_comp.pdbx_modified_date 2019-07-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 248.278
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NZ4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QS0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NZ4 N1 N1 N 0 1 N N N N N N 26.511 7.840 -17.227 0.380 0.235 -0.146 N1 NZ4 1
NZ4 C4 C1 C 0 1 Y N N N N N 22.341 8.294 -17.155 -3.509 -1.293 -0.175 C4 NZ4 2
NZ4 C5 C2 C 0 1 Y N N N N N 23.146 9.385 -17.438 -2.428 -2.142 -0.293 C5 NZ4 3
NZ4 C6 C3 C 0 1 Y N N N N N 24.520 9.258 -17.466 -1.141 -1.637 -0.284 C6 NZ4 4
NZ4 C7 C4 C 0 1 Y N N N N N 25.108 8.018 -17.211 -0.926 -0.269 -0.155 C7 NZ4 5
NZ4 C8 C5 C 0 1 N N N N N N 27.403 8.636 -17.902 1.410 -0.567 0.188 C8 NZ4 6
NZ4 C10 C6 C 0 1 N N N N N N 30.582 10.037 -17.084 4.919 -0.477 -0.344 C10 NZ4 7
NZ4 C13 C7 C 0 1 Y N N N N N 24.294 6.922 -16.932 -2.003 0.594 -0.035 C13 NZ4 8
NZ4 C1 C8 C 0 1 N N N N N N 22.643 4.499 -16.439 -5.857 0.442 0.062 C1 NZ4 9
NZ4 C11 C9 C 0 1 N N N N N N 30.660 7.826 -16.253 4.009 1.733 -0.564 C11 NZ4 10
NZ4 C12 C10 C 0 1 N N N N N N 29.155 7.783 -16.361 2.846 1.415 0.382 C12 NZ4 11
NZ4 C2 C11 C 0 1 N N N N N N 22.039 5.863 -16.587 -4.455 0.994 0.078 C2 NZ4 12
NZ4 C3 C12 C 0 1 Y N N N N N 22.906 7.049 -16.897 -3.304 0.084 -0.044 C3 NZ4 13
NZ4 C9 C13 C 0 1 N N N N N N 29.773 9.320 -18.138 3.803 -0.908 0.614 C9 NZ4 14
NZ4 N2 N2 N 0 1 N N N N N N 28.697 8.573 -17.497 2.636 -0.042 0.386 N2 NZ4 15
NZ4 O1 O1 O 0 1 N N N N N N 20.831 6.012 -16.454 -4.274 2.188 0.191 O1 NZ4 16
NZ4 O2 O2 O 0 1 N N N N N N 27.045 9.367 -18.827 1.234 -1.763 0.310 O2 NZ4 17
NZ4 O3 O3 O 0 1 N N N N N N 31.159 9.154 -16.123 5.137 0.929 -0.210 O3 NZ4 18
NZ4 H1 H1 H 0 1 N N N N N N 26.883 7.073 -16.705 0.543 1.161 -0.385 H1 NZ4 19
NZ4 H2 H2 H 0 1 N N N N N N 21.267 8.410 -17.134 -4.513 -1.691 -0.187 H2 NZ4 20
NZ4 H3 H3 H 0 1 N N N N N N 22.694 10.345 -17.639 -2.588 -3.205 -0.394 H3 NZ4 21
NZ4 H4 H4 H 0 1 N N N N N N 25.139 10.116 -17.685 -0.300 -2.307 -0.377 H4 NZ4 22
NZ4 H5 H5 H 0 1 N N N N N N 31.392 10.591 -17.581 5.837 -1.013 -0.099 H5 NZ4 23
NZ4 H6 H6 H 0 1 N N N N N N 29.923 10.744 -16.558 4.628 -0.705 -1.370 H6 NZ4 24
NZ4 H7 H7 H 0 1 N N N N N N 24.745 5.960 -16.740 -1.837 1.656 0.066 H7 NZ4 25
NZ4 H8 H8 H 0 1 N N N N N N 21.851 3.769 -16.214 -6.223 0.410 -0.964 H8 NZ4 26
NZ4 H9 H9 H 0 1 N N N N N N 23.146 4.217 -17.376 -5.856 -0.565 0.479 H9 NZ4 27
NZ4 H10 H10 H 0 1 N N N N N N 23.375 4.510 -15.618 -6.506 1.082 0.659 H10 NZ4 28
NZ4 H11 H11 H 0 1 N N N N N N 30.967 7.246 -15.371 3.714 1.513 -1.590 H11 NZ4 29
NZ4 H12 H12 H 0 1 N N N N N N 31.092 7.374 -17.158 4.271 2.787 -0.478 H12 NZ4 30
NZ4 H13 H13 H 0 1 N N N N N N 28.715 8.189 -15.438 3.089 1.753 1.389 H13 NZ4 31
NZ4 H14 H14 H 0 1 N N N N N N 28.832 6.740 -16.493 1.942 1.916 0.035 H14 NZ4 32
NZ4 H15 H15 H 0 1 N N N N N N 30.423 8.626 -18.691 3.533 -1.946 0.419 H15 NZ4 33
NZ4 H16 H16 H 0 1 N N N N N N 29.345 10.055 -18.835 4.142 -0.804 1.644 H16 NZ4 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NZ4 O2 C8 DOUB N N 1
NZ4 C9 N2 SING N N 2
NZ4 C9 C10 SING N N 3
NZ4 C8 N2 SING N N 4
NZ4 C8 N1 SING N N 5
NZ4 N2 C12 SING N N 6
NZ4 C6 C5 DOUB Y N 7
NZ4 C6 C7 SING Y N 8
NZ4 C5 C4 SING Y N 9
NZ4 N1 C7 SING N N 10
NZ4 C7 C13 DOUB Y N 11
NZ4 C4 C3 DOUB Y N 12
NZ4 C10 O3 SING N N 13
NZ4 C13 C3 SING Y N 14
NZ4 C3 C2 SING N N 15
NZ4 C2 O1 DOUB N N 16
NZ4 C2 C1 SING N N 17
NZ4 C12 C11 SING N N 18
NZ4 C11 O3 SING N N 19
NZ4 N1 H1 SING N N 20
NZ4 C4 H2 SING N N 21
NZ4 C5 H3 SING N N 22
NZ4 C6 H4 SING N N 23
NZ4 C10 H5 SING N N 24
NZ4 C10 H6 SING N N 25
NZ4 C13 H7 SING N N 26
NZ4 C1 H8 SING N N 27
NZ4 C1 H9 SING N N 28
NZ4 C1 H10 SING N N 29
NZ4 C11 H11 SING N N 30
NZ4 C11 H12 SING N N 31
NZ4 C12 H13 SING N N 32
NZ4 C12 H14 SING N N 33
NZ4 C9 H15 SING N N 34
NZ4 C9 H16 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NZ4 SMILES ACDLabs 12.01 N(c1cccc(c1)C(C)=O)C(N2CCOCC2)=O
NZ4 InChI InChI 1.03 InChI=1S/C13H16N2O3/c1-10(16)11-3-2-4-12(9-11)14-13(17)15-5-7-18-8-6-15/h2-4,9H,5-8H2,1H3,(H,14,17)
NZ4 InChIKey InChI 1.03 GFGGXIIHWJXKMZ-UHFFFAOYSA-N
NZ4 SMILES_CANONICAL CACTVS 3.385 CC(=O)c1cccc(NC(=O)N2CCOCC2)c1
NZ4 SMILES CACTVS 3.385 CC(=O)c1cccc(NC(=O)N2CCOCC2)c1
NZ4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)c1cccc(c1)NC(=O)N2CCOCC2
NZ4 SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)c1cccc(c1)NC(=O)N2CCOCC2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NZ4 "SYSTEMATIC NAME" ACDLabs 12.01 N-(3-acetylphenyl)morpholine-4-carboxamide
NZ4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ~{N}-(3-ethanoylphenyl)morpholine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NZ4 'Create component' 2019-05-29 RCSB
NZ4 'Initial release' 2019-07-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NZ4 N1 N 6.897 0.375 1
NZ4 C4 C 6.897 -4.125 2
NZ4 C5 C 8.196 -3.375 3
NZ4 C6 C 8.196 -1.875 4
NZ4 C7 C 6.897 -1.125 5
NZ4 C8 C 8.196 1.125 6
NZ4 C10 C 6.897 4.875 7
NZ4 C13 C 5.598 -1.875 8
NZ4 C1 C 4.299 -5.625 9
NZ4 C11 C 9.495 4.875 10
NZ4 C12 C 9.495 3.375 11
NZ4 C2 C 4.299 -4.125 12
NZ4 C3 C 5.598 -3.375 13
NZ4 C9 C 6.897 3.375 14
NZ4 N2 N 8.196 2.625 15
NZ4 O1 O 3.000 -3.375 16
NZ4 O2 O 9.495 0.375 17
NZ4 O3 O 8.196 5.625 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NZ4 O2 C8 DOUBLE NONE 1
NZ4 C9 N2 SINGLE NONE 2
NZ4 C9 C10 SINGLE NONE 3
NZ4 C8 N2 SINGLE NONE 4
NZ4 C8 N1 SINGLE NONE 5
NZ4 N2 C12 SINGLE NONE 6
NZ4 C6 C5 SINGLE NONE 7
NZ4 C6 C7 DOUBLE NONE 8
NZ4 C5 C4 DOUBLE NONE 9
NZ4 N1 C7 SINGLE NONE 10
NZ4 C7 C13 SINGLE NONE 11
NZ4 C4 C3 SINGLE NONE 12
NZ4 C10 O3 SINGLE NONE 13
NZ4 C13 C3 DOUBLE NONE 14
NZ4 C3 C2 SINGLE NONE 15
NZ4 C2 O1 DOUBLE NONE 16
NZ4 C2 C1 SINGLE NONE 17
NZ4 C12 C11 SINGLE NONE 18
NZ4 C11 O3 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NZ4 MurckoScaffold S1 scaffold O=C(Nc1ccccc1)N1CCOCC1 InChI=1S/C11H14N2O2/c14-11(13-6-8-15-9-7-13)12-10-4-2-1-3-5-10/h1-5H,6-9H2,(H,12,14) MNKRJSJKVHUXIG-UHFFFAOYSA-N
NZ4 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NZ4 Z274555794 F2 fragment CC(=O)c1cccc(NC(=O)N2CCOCC2)c1 InChI=1S/C13H16N2O3/c1-10(16)11-3-2-4-12(9-11)14-13(17)15-5-7-18-8-6-15/h2-4,9H,5-8H2,1H3,(H,14,17) GFGGXIIHWJXKMZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NZ4 N1 S1 1
NZ4 C4 S1 1
NZ4 C5 S1 1
NZ4 C6 S1 1
NZ4 C7 S1 1
NZ4 C8 S1 1
NZ4 C10 S1 1
NZ4 C13 S1 1
NZ4 C11 S1 1
NZ4 C12 S1 1
NZ4 C3 S1 1
NZ4 C9 S1 1
NZ4 N2 S1 1
NZ4 O2 S1 1
NZ4 O3 S1 1
NZ4 C4 F1 1
NZ4 C5 F1 1
NZ4 C6 F1 1
NZ4 C7 F1 1
NZ4 C13 F1 1
NZ4 C3 F1 1
NZ4 C1 F2 1
NZ4 C2 F2 1
NZ4 O1 F2 1
NZ4 C3 F2 1
NZ4 C4 F2 1
NZ4 C5 F2 1
NZ4 C6 F2 1
NZ4 C7 F2 1
NZ4 N1 F2 1
NZ4 C8 F2 1
NZ4 O2 F2 1
NZ4 N2 F2 1
NZ4 C9 F2 1
NZ4 C10 F2 1
NZ4 O3 F2 1
NZ4 C11 F2 1
NZ4 C12 F2 1
NZ4 C13 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NZ4
_pdbe_chem_comp_rdkit_properties.exactmw 248.116
_pdbe_chem_comp_rdkit_properties.amw 248.282
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.385
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.264
_pdbe_chem_comp_rdkit_properties.tpsa 58.640
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.318
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.767
_pdbe_chem_comp_rdkit_properties.chi0v 8.619
_pdbe_chem_comp_rdkit_properties.chi1v 4.435
_pdbe_chem_comp_rdkit_properties.chi2v 1.655
_pdbe_chem_comp_rdkit_properties.chi3v 1.655
_pdbe_chem_comp_rdkit_properties.chi4v 0.935
_pdbe_chem_comp_rdkit_properties.chi0n 24.619
_pdbe_chem_comp_rdkit_properties.chi1n 12.382
_pdbe_chem_comp_rdkit_properties.chi2n 1.655
_pdbe_chem_comp_rdkit_properties.chi3n 1.655
_pdbe_chem_comp_rdkit_properties.chi4n 0.935
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.880
_pdbe_chem_comp_rdkit_properties.kappa1 3.360
_pdbe_chem_comp_rdkit_properties.kappa2 5.640
_pdbe_chem_comp_rdkit_properties.kappa3 3.074
_pdbe_chem_comp_rdkit_properties.Phi 1.053
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NZ4 UniChem ChEMBL CHEMBL1584650
NZ4 UniChem PDBe NZ4
NZ4 UniChem ZINC ZINC000000032414
NZ4 UniChem eMolecules 5517091
NZ4 UniChem PubChem 671267
NZ4 UniChem Mcule MCULE-7219091281
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NZ4 N1 -0.024 -0.058 0.043 ETKDGv3 1
NZ4 C4 4.047 -0.868 -0.938 ETKDGv3 2
NZ4 C5 3.076 -1.231 -1.783 ETKDGv3 3
NZ4 C6 1.665 -0.953 -1.457 ETKDGv3 4
NZ4 C7 1.345 -0.315 -0.317 ETKDGv3 5
NZ4 C8 -1.057 0.252 -0.912 ETKDGv3 6
NZ4 C10 -4.362 -0.355 0.987 ETKDGv3 7
NZ4 C13 2.424 0.069 0.627 ETKDGv3 8
NZ4 C1 4.555 0.888 2.576 ETKDGv3 9
NZ4 C11 -4.885 0.240 -1.160 ETKDGv3 10
NZ4 C12 -3.441 0.260 -1.663 ETKDGv3 11
NZ4 C2 4.816 0.197 1.270 ETKDGv3 12
NZ4 C3 3.718 -0.185 0.342 ETKDGv3 13
NZ4 C9 -2.845 -0.368 0.762 ETKDGv3 14
NZ4 N2 -2.458 0.119 -0.575 ETKDGv3 15
NZ4 O1 6.010 -0.063 0.959 ETKDGv3 16
NZ4 O2 -0.732 0.659 -2.062 ETKDGv3 17
NZ4 O3 -5.055 -0.752 -0.174 ETKDGv3 18
NZ4 H1 -0.236 0.008 1.062 ETKDGv3 19
NZ4 H2 5.076 -1.083 -1.196 ETKDGv3 20
NZ4 H3 3.324 -1.734 -2.709 ETKDGv3 21
NZ4 H4 0.899 -1.297 -2.139 ETKDGv3 22
NZ4 H5 -4.697 0.648 1.341 ETKDGv3 23
NZ4 H6 -4.605 -1.068 1.803 ETKDGv3 24
NZ4 H7 2.141 0.563 1.546 ETKDGv3 25
NZ4 H8 4.050 1.860 2.395 ETKDGv3 26
NZ4 H9 5.508 1.082 3.112 ETKDGv3 27
NZ4 H10 3.915 0.248 3.220 ETKDGv3 28
NZ4 H11 -5.556 0.007 -2.014 ETKDGv3 29
NZ4 H12 -5.186 1.248 -0.791 ETKDGv3 30
NZ4 H13 -3.274 1.219 -2.201 ETKDGv3 31
NZ4 H14 -3.298 -0.573 -2.385 ETKDGv3 32
NZ4 H15 -2.466 -1.405 0.891 ETKDGv3 33
NZ4 H16 -2.393 0.277 1.544 ETKDGv3 34
#