data_O7G
#
_chem_comp.id O7G
_chem_comp.name N,N-dimethyl-L-valine
_chem_comp.type "L-peptide NH3 amino terminus"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C7 H15 N O2"
_chem_comp.mon_nstd_parent_comp_id VAL
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-17
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 145.200
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code O7G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PBS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O7G N N1 N 0 1 N N N Y Y N 40.292 -27.867 -9.013 -0.731 -1.230 0.333 N SC0 1
O7G CA C1 C 0 1 N N S Y N N 40.370 -28.318 -7.624 0.144 -0.060 0.483 CA SC0 2
O7G C C2 C 0 1 N N N Y N Y 41.832 -28.370 -7.149 -0.550 1.160 -0.063 C SC0 3
O7G O O1 O 0 1 N N N Y N Y 42.083 -27.772 -6.151 -1.382 1.044 -0.932 O SC0 4
O7G CB C3 C 0 1 N N N N N N 39.771 -29.701 -7.334 1.445 -0.294 -0.288 CB SC0 5
O7G CAA C4 C 0 1 N N N N N N 41.406 -26.976 -9.414 -1.997 -1.037 1.053 CAA SC0 6
O7G CAB C5 C 0 1 N N N N N N 39.029 -27.124 -9.256 -0.973 -1.529 -1.085 CAB SC0 7
O7G CAF C6 C 0 1 N N N N N N 39.064 -29.656 -5.961 2.413 0.859 -0.017 CAF SC0 8
O7G CAG C7 C 0 1 N N N N N N 38.885 -30.332 -8.465 2.079 -1.610 0.168 CAG SC0 9
O7G HA H2 H 0 1 N N N Y N N 39.842 -27.589 -6.991 0.370 0.091 1.538 HA SC0 10
O7G HB1 H3 H 0 1 N N N N N N 40.626 -30.382 -7.211 1.231 -0.345 -1.355 HB1 SC0 11
O7G HAA1 H4 H 0 0 N N N N N N 42.365 -27.490 -9.250 -2.554 -1.974 1.067 HAA1 SC0 12
O7G HAA2 H5 H 0 0 N N N N N N 41.305 -26.720 -10.479 -1.788 -0.723 2.076 HAA2 SC0 13
O7G HAA3 H6 H 0 0 N N N N N N 41.375 -26.056 -8.811 -2.587 -0.270 0.551 HAA3 SC0 14
O7G HAB3 H7 H 0 0 N N N N N N 38.173 -27.752 -8.970 -1.631 -0.771 -1.509 HAB3 SC0 15
O7G HAB1 H8 H 0 0 N N N N N N 39.024 -26.203 -8.655 -0.025 -1.528 -1.623 HAB1 SC0 16
O7G HAB2 H9 H 0 0 N N N N N N 38.955 -26.866 -10.323 -1.441 -2.509 -1.176 HAB2 SC0 17
O7G HAF3 H10 H 0 0 N N N N N N 38.629 -30.642 -5.739 2.628 0.910 1.051 HAF3 SC0 18
O7G HAF1 H11 H 0 0 N N N N N N 39.794 -29.394 -5.181 3.340 0.692 -0.566 HAF1 SC0 19
O7G HAF2 H12 H 0 0 N N N N N N 38.265 -28.900 -5.985 1.962 1.796 -0.342 HAF2 SC0 20
O7G HAG2 H13 H 0 0 N N N N N N 38.518 -31.316 -8.138 1.429 -2.441 -0.106 HAG2 SC0 21
O7G HAG3 H14 H 0 0 N N N N N N 38.030 -29.672 -8.672 3.049 -1.733 -0.314 HAG3 SC0 22
O7G HAG1 H15 H 0 0 N N N N N N 39.486 -30.451 -9.378 2.210 -1.594 1.250 HAG1 SC0 23
O7G OXT OXT O 0 1 N Y N Y N Y 42.843 -29.371 -7.596 -0.245 2.377 0.415 OXT SC0 24
O7G HXT HXT H 0 1 N Y N Y N Y 43.571 -29.380 -6.986 -0.717 3.129 0.034 HXT SC0 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O7G N CAB SING N N 1
O7G N CAA SING N N 2
O7G N CA SING N N 3
O7G CA C SING N N 4
O7G CA CB SING N N 5
O7G C O DOUB N N 6
O7G CB CAG SING N N 7
O7G CB CAF SING N N 8
O7G CA HA SING N N 9
O7G CB HB1 SING N N 10
O7G CAA HAA1 SING N N 11
O7G CAA HAA2 SING N N 12
O7G CAA HAA3 SING N N 13
O7G CAB HAB3 SING N N 14
O7G CAB HAB1 SING N N 15
O7G CAB HAB2 SING N N 16
O7G CAF HAF3 SING N N 17
O7G CAF HAF1 SING N N 18
O7G CAF HAF2 SING N N 19
O7G CAG HAG2 SING N N 20
O7G CAG HAG3 SING N N 21
O7G CAG HAG1 SING N N 22
O7G C OXT SING N N 23
O7G OXT HXT SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O7G SMILES ACDLabs 12.01 N(C)(C)C(C(=O)O)C(C)C
O7G InChI InChI 1.03 InChI=1S/C7H15NO2/c1-5(2)6(7(9)10)8(3)4/h5-6H,1-4H3,(H,9,10)/t6-/m0/s1
O7G InChIKey InChI 1.03 APGLTERDKORUHK-LURJTMIESA-N
O7G SMILES_CANONICAL CACTVS 3.385 CC(C)[C@H](N(C)C)C(O)=O
O7G SMILES CACTVS 3.385 CC(C)[CH](N(C)C)C(O)=O
O7G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)[C@@H](C(=O)O)N(C)C
O7G SMILES "OpenEye OEToolkits" 2.0.7 CC(C)C(C(=O)O)N(C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O7G "SYSTEMATIC NAME" ACDLabs 12.01 N,N-dimethyl-L-valine
O7G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-(dimethylamino)-3-methyl-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O7G 'Create component' 2019-06-17 RCSB
O7G 'Initial release' 2020-05-13 RCSB
O7G 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
O7G N N 7.702 0.750 1
O7G CA C 6.404 0.000 2
O7G C C 5.104 0.750 3
O7G O O 3.805 0.000 4
O7G CB C 6.404 -1.500 5
O7G CAA C 7.702 2.250 6
O7G CAB C 9.002 0.000 7
O7G CAF C 7.702 -2.250 8
O7G CAG C 5.104 -2.250 9
O7G OXT O 5.104 2.250 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
O7G N CAB SINGLE NONE 1
O7G N CAA SINGLE NONE 2
O7G N CA SINGLE NONE 3
O7G CA C SINGLE NONE 4
O7G CA CB SINGLE BEGINWEDGE 5
O7G C O DOUBLE NONE 6
O7G CB CAG SINGLE NONE 7
O7G CB CAF SINGLE NONE 8
O7G C OXT SINGLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id O7G
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
O7G O F1 1
O7G C F1 1
O7G CA F1 1
O7G N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id O7G
_pdbe_chem_comp_rdkit_properties.exactmw 145.110
_pdbe_chem_comp_rdkit_properties.amw 145.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.806
_pdbe_chem_comp_rdkit_properties.tpsa 40.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.657
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.949
_pdbe_chem_comp_rdkit_properties.chi0v 4.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.079
_pdbe_chem_comp_rdkit_properties.chi2v 0.654
_pdbe_chem_comp_rdkit_properties.chi3v 0.654
_pdbe_chem_comp_rdkit_properties.chi4v 0.305
_pdbe_chem_comp_rdkit_properties.chi0n 19.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.487
_pdbe_chem_comp_rdkit_properties.chi2n 0.654
_pdbe_chem_comp_rdkit_properties.chi3n 0.654
_pdbe_chem_comp_rdkit_properties.chi4n 0.305
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.221
_pdbe_chem_comp_rdkit_properties.kappa2 3.562
_pdbe_chem_comp_rdkit_properties.kappa3 2.351
_pdbe_chem_comp_rdkit_properties.Phi 0.435
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
O7G UniChem PDBe O7G
O7G UniChem ChEBI 173190
O7G UniChem ZINC ZINC000000402067
O7G UniChem ACTor 2812-32-0
O7G UniChem 'Probes And Drugs' PD020351
O7G UniChem 'EPA CompTox Dashboard' DTXSID10451600
O7G UniChem eMolecules 26986040
O7G UniChem SureChEMBL SCHEMBL214942
O7G UniChem 'PubChem TPHARMA' 16068707
O7G UniChem PubChem 11008044
O7G UniChem PubChem 41097809
O7G UniChem Nikkaji J725.113K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
O7G N 0.998 -0.957 0.038 ETKDGv3 1
O7G CA 0.260 0.278 -0.364 ETKDGv3 2
O7G C 0.322 1.392 0.666 ETKDGv3 3
O7G O -0.518 1.463 1.602 ETKDGv3 4
O7G CB -1.173 -0.070 -0.871 ETKDGv3 5
O7G CAA 2.367 -0.973 -0.504 ETKDGv3 6
O7G CAB 1.037 -1.216 1.492 ETKDGv3 7
O7G CAF -1.929 1.177 -1.359 ETKDGv3 8
O7G CAG -2.031 -0.861 0.129 ETKDGv3 9
O7G HA 0.752 0.712 -1.267 ETKDGv3 10
O7G HB1 -1.044 -0.728 -1.760 ETKDGv3 11
O7G HAA1 2.950 -0.100 -0.135 ETKDGv3 12
O7G HAA2 2.891 -1.910 -0.213 ETKDGv3 13
O7G HAA3 2.338 -0.951 -1.614 ETKDGv3 14
O7G HAB3 0.028 -1.135 1.943 ETKDGv3 15
O7G HAB1 1.394 -2.252 1.678 ETKDGv3 16
O7G HAB2 1.720 -0.507 2.011 ETKDGv3 17
O7G HAF3 -1.314 1.739 -2.094 ETKDGv3 18
O7G HAF1 -2.874 0.877 -1.861 ETKDGv3 19
O7G HAF2 -2.181 1.848 -0.511 ETKDGv3 20
O7G HAG2 -3.025 -1.079 -0.316 ETKDGv3 21
O7G HAG3 -2.193 -0.296 1.068 ETKDGv3 22
O7G HAG1 -1.558 -1.838 0.358 ETKDGv3 23
O7G OXT 1.355 2.323 0.601 ETKDGv3 24
O7G HXT 1.430 3.065 1.286 ETKDGv3 25
#