data_OBZ
#
_chem_comp.id OBZ
_chem_comp.name O-benzylhydroxylamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H9 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-23
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 123.152
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OBZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DTG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OBZ O2 O2 O 0 1 N N N N N N 9.435 -15.606 8.822 2.158 0.022 -0.488 O2 OBZ 1
OBZ C3 C3 C 0 1 N N N N N N 8.747 -16.036 10.034 1.375 0.014 0.707 C3 OBZ 2
OBZ C4 C4 C 0 1 Y N N N N N 9.166 -17.400 10.333 -0.089 0.005 0.349 C4 OBZ 3
OBZ C9 C9 C 0 1 Y N N N N N 8.518 -18.488 9.681 -0.752 -1.196 0.182 C9 OBZ 4
OBZ C8 C8 C 0 1 Y N N N N N 9.000 -19.801 9.853 -2.095 -1.204 -0.146 C8 OBZ 5
OBZ C7 C7 C 0 1 Y N N N N N 10.133 -20.006 10.685 -2.774 -0.011 -0.308 C7 OBZ 6
OBZ C6 C6 C 0 1 Y N N N N N 10.774 -18.924 11.345 -2.111 1.190 -0.140 C6 OBZ 7
OBZ C5 C5 C 0 1 Y N N N N N 10.287 -17.619 11.168 -0.769 1.198 0.192 C5 OBZ 8
OBZ N1 N1 N 0 1 N N N N N N 9.218 -14.360 8.323 3.602 0.031 -0.254 N1 OBZ 9
OBZ H3 H3 H 0 1 N N N N N N 9.010 -15.371 10.870 1.612 -0.875 1.291 H3 OBZ 10
OBZ H3A H3A H 0 1 N N N N N N 7.658 -15.996 9.887 1.600 0.905 1.294 H3A OBZ 11
OBZ H9 H9 H 0 1 N N N N N N 7.657 -18.307 9.055 -0.221 -2.128 0.309 H9 OBZ 12
OBZ H8 H8 H 0 1 N N N N N N 8.518 -20.634 9.363 -2.613 -2.143 -0.277 H8 OBZ 13
OBZ H7 H7 H 0 1 N N N N N N 10.516 -21.007 10.819 -3.823 -0.018 -0.566 H7 OBZ 14
OBZ H6 H6 H 0 1 N N N N N N 11.630 -19.104 11.979 -2.642 2.122 -0.267 H6 OBZ 15
OBZ H5 H5 H 0 1 N N N N N N 10.765 -16.788 11.666 -0.252 2.137 0.327 H5 OBZ 16
OBZ HN1 HN1 H 0 1 N N N N N N 9.165 -13.704 9.076 3.880 -0.750 0.322 HN1 OBZ 17
OBZ HN1A HN1A H 0 0 N N N N N N 9.971 -14.109 7.715 4.110 0.036 -1.125 HN1A OBZ 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OBZ O2 C3 SING N N 1
OBZ C3 C4 SING N N 2
OBZ C4 C9 DOUB Y N 3
OBZ C4 C5 SING Y N 4
OBZ C9 C8 SING Y N 5
OBZ C8 C7 DOUB Y N 6
OBZ C7 C6 SING Y N 7
OBZ C6 C5 DOUB Y N 8
OBZ O2 N1 SING N N 9
OBZ C3 H3 SING N N 10
OBZ C3 H3A SING N N 11
OBZ C9 H9 SING N N 12
OBZ C8 H8 SING N N 13
OBZ C7 H7 SING N N 14
OBZ C6 H6 SING N N 15
OBZ C5 H5 SING N N 16
OBZ N1 HN1 SING N N 17
OBZ N1 HN1A SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OBZ SMILES ACDLabs 10.04 "[(aminooxy)methyl]benzene"
OBZ SMILES_CANONICAL CACTVS 3.341 NOCc1ccccc1
OBZ SMILES CACTVS 3.341 NOCc1ccccc1
OBZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CON
OBZ SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CON
OBZ InChI InChI 1.03 InChI=1S/C7H9NO/c8-9-6-7-4-2-1-3-5-7/h1-5H,6,8H2
OBZ InChIKey InChI 1.03 XYEOALKITRFCJJ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OBZ "SYSTEMATIC NAME" ACDLabs 10.04 O-benzylhydroxylamine
OBZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 O-(phenylmethyl)hydroxylamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OBZ 'Create component' 2008-07-23 PDBJ
OBZ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OBZ O2 O 5.598 1.643 1
OBZ C3 C 4.299 0.892 2
OBZ C4 C 4.299 -0.608 3
OBZ C9 C 3.000 -1.357 4
OBZ C8 C 3.000 -2.857 5
OBZ C7 C 4.299 -3.607 6
OBZ C6 C 5.598 -2.857 7
OBZ C5 C 5.598 -1.357 8
OBZ N1 N 5.598 3.143 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OBZ O2 C3 SINGLE NONE 1
OBZ C3 C4 SINGLE NONE 2
OBZ C4 C9 DOUBLE NONE 3
OBZ C4 C5 SINGLE NONE 4
OBZ C9 C8 SINGLE NONE 5
OBZ C8 C7 DOUBLE NONE 6
OBZ C7 C6 SINGLE NONE 7
OBZ C6 C5 DOUBLE NONE 8
OBZ O2 N1 SINGLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OBZ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
OBZ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OBZ C4 S1 1
OBZ C9 S1 1
OBZ C8 S1 1
OBZ C7 S1 1
OBZ C6 S1 1
OBZ C5 S1 1
OBZ C4 F1 1
OBZ C9 F1 1
OBZ C8 F1 1
OBZ C7 F1 1
OBZ C6 F1 1
OBZ C5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OBZ
_pdbe_chem_comp_rdkit_properties.exactmw 123.068
_pdbe_chem_comp_rdkit_properties.amw 123.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 66.965
_pdbe_chem_comp_rdkit_properties.tpsa 35.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.022
_pdbe_chem_comp_rdkit_properties.CrippenMR 35.152
_pdbe_chem_comp_rdkit_properties.chi0v 4.355
_pdbe_chem_comp_rdkit_properties.chi1v 2.137
_pdbe_chem_comp_rdkit_properties.chi2v 0.648
_pdbe_chem_comp_rdkit_properties.chi3v 0.648
_pdbe_chem_comp_rdkit_properties.chi4v 0.347
_pdbe_chem_comp_rdkit_properties.chi0n 13.355
_pdbe_chem_comp_rdkit_properties.chi1n 6.531
_pdbe_chem_comp_rdkit_properties.chi2n 0.648
_pdbe_chem_comp_rdkit_properties.chi3n 0.648
_pdbe_chem_comp_rdkit_properties.chi4n 0.347
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.860
_pdbe_chem_comp_rdkit_properties.kappa1 1.413
_pdbe_chem_comp_rdkit_properties.kappa2 3.222
_pdbe_chem_comp_rdkit_properties.kappa3 1.835
_pdbe_chem_comp_rdkit_properties.Phi 0.506
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OBZ UniChem ChEMBL CHEMBL443652
OBZ UniChem PDBe OBZ
OBZ UniChem ZINC ZINC000000155377
OBZ UniChem BindingDb 50146579
OBZ UniChem BRENDA 6636
OBZ UniChem ChemicalBook CB6853994
OBZ UniChem 'Probes And Drugs' PD131280
OBZ UniChem 'EPA CompTox Dashboard' DTXSID8073213
OBZ UniChem eMolecules 719646
OBZ UniChem SureChEMBL SCHEMBL7948
OBZ UniChem 'PubChem TPHARMA' 15170613
OBZ UniChem PubChem 102313
OBZ UniChem Mcule MCULE-5591314048
OBZ UniChem ACTor 622-33-3
OBZ UniChem Nikkaji J45.679I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OBZ O2 -2.338 -0.634 0.112 ETKDGv3 1
OBZ C3 -1.453 -0.749 -0.976 ETKDGv3 2
OBZ C4 -0.064 -0.333 -0.572 ETKDGv3 3
OBZ C9 0.417 0.880 -0.901 ETKDGv3 4
OBZ C8 1.771 1.286 -0.467 ETKDGv3 5
OBZ C7 2.518 0.453 0.267 ETKDGv3 6
OBZ C6 1.991 -0.874 0.645 ETKDGv3 7
OBZ C5 0.767 -1.247 0.251 ETKDGv3 8
OBZ N1 -2.694 0.675 0.191 ETKDGv3 9
OBZ H3 -1.812 -0.181 -1.868 ETKDGv3 10
OBZ H3A -1.424 -1.814 -1.288 ETKDGv3 11
OBZ H9 -0.178 1.573 -1.482 ETKDGv3 12
OBZ H8 2.154 2.260 -0.742 ETKDGv3 13
OBZ H7 3.509 0.750 0.586 ETKDGv3 14
OBZ H6 2.596 -1.542 1.244 ETKDGv3 15
OBZ H5 0.384 -2.219 0.536 ETKDGv3 16
OBZ HN1 -3.739 0.705 0.173 ETKDGv3 17
OBZ HN1A -2.403 1.011 1.136 ETKDGv3 18
#