data_OCT
#
_chem_comp.id OCT
_chem_comp.name N-OCTANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H18"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 114.229
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OCT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1APM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OCT C1 C1 C 0 1 N N N N N N -1.335 -8.264 -9.894 -0.277 0.000 4.385 C1 OCT 1
OCT C2 C2 C 0 1 N N N N N N -2.610 -8.301 -9.016 0.558 0.000 3.104 C2 OCT 2
OCT C3 C3 C 0 1 N N N N N N -3.735 -9.205 -9.576 -0.371 0.000 1.889 C3 OCT 3
OCT C4 C4 C 0 1 N N N N N N -5.154 -8.885 -9.028 0.464 0.000 0.607 C4 OCT 4
OCT C5 C5 C 0 1 N N N N N N -6.170 -10.059 -9.126 -0.464 0.000 -0.607 C5 OCT 5
OCT C6 C6 C 0 1 N N N N N N -7.572 -9.690 -9.682 0.371 0.000 -1.889 C6 OCT 6
OCT C7 C7 C 0 1 N N N N N N -8.756 -10.139 -8.774 -0.558 0.000 -3.104 C7 OCT 7
OCT C8 C8 C 0 1 N N N N N N -10.122 -9.522 -9.172 0.277 0.000 -4.385 C8 OCT 8
OCT H11 1H1 H 0 1 N N N N N N -0.524 -7.612 -9.490 -0.906 -0.890 4.409 H11 OCT 9
OCT H12 2H1 H 0 1 N N N N N N -0.954 -9.296 -10.074 0.385 0.000 5.251 H12 OCT 10
OCT H13 3H1 H 0 1 N N N N N N -1.588 -7.971 -10.939 -0.906 0.890 4.409 H13 OCT 11
OCT H21 1H2 H 0 1 N N N N N N -2.356 -8.594 -7.970 1.187 0.890 3.080 H21 OCT 12
OCT H22 2H2 H 0 1 N N N N N N -2.990 -7.268 -8.835 1.187 -0.890 3.080 H22 OCT 13
OCT H31 1H3 H 0 1 N N N N N N -3.734 -9.178 -10.690 -0.999 -0.890 1.912 H31 OCT 14
OCT H32 2H3 H 0 1 N N N N N N -3.488 -10.279 -9.409 -0.999 0.890 1.912 H32 OCT 15
OCT H41 1H4 H 0 1 N N N N N N -5.088 -8.516 -7.977 1.093 0.890 0.583 H41 OCT 16
OCT H42 2H4 H 0 1 N N N N N N -5.564 -7.975 -9.525 1.093 -0.890 0.583 H42 OCT 17
OCT H51 1H5 H 0 1 N N N N N N -5.731 -10.893 -9.722 -1.093 -0.890 -0.583 H51 OCT 18
OCT H52 2H5 H 0 1 N N N N N N -6.273 -10.557 -8.133 -1.093 0.890 -0.583 H52 OCT 19
OCT H61 1H6 H 0 1 N N N N N N -7.633 -8.596 -9.891 0.999 0.890 -1.912 H61 OCT 20
OCT H62 2H6 H 0 1 N N N N N N -7.699 -10.088 -10.715 0.999 -0.890 -1.912 H62 OCT 21
OCT H71 1H7 H 0 1 N N N N N N -8.823 -11.251 -8.739 -1.187 -0.890 -3.080 H71 OCT 22
OCT H72 2H7 H 0 1 N N N N N N -8.529 -9.930 -7.702 -1.187 0.890 -3.080 H72 OCT 23
OCT H81 1H8 H 0 1 N N N N N N -10.969 -9.843 -8.522 -0.385 0.000 -5.251 H81 OCT 24
OCT H82 2H8 H 0 1 N N N N N N -10.054 -8.409 -9.206 0.906 0.890 -4.409 H82 OCT 25
OCT H83 3H8 H 0 1 N N N N N N -10.348 -9.730 -10.243 0.906 -0.890 -4.409 H83 OCT 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OCT C1 C2 SING N N 1
OCT C1 H11 SING N N 2
OCT C1 H12 SING N N 3
OCT C1 H13 SING N N 4
OCT C2 C3 SING N N 5
OCT C2 H21 SING N N 6
OCT C2 H22 SING N N 7
OCT C3 C4 SING N N 8
OCT C3 H31 SING N N 9
OCT C3 H32 SING N N 10
OCT C4 C5 SING N N 11
OCT C4 H41 SING N N 12
OCT C4 H42 SING N N 13
OCT C5 C6 SING N N 14
OCT C5 H51 SING N N 15
OCT C5 H52 SING N N 16
OCT C6 C7 SING N N 17
OCT C6 H61 SING N N 18
OCT C6 H62 SING N N 19
OCT C7 C8 SING N N 20
OCT C7 H71 SING N N 21
OCT C7 H72 SING N N 22
OCT C8 H81 SING N N 23
OCT C8 H82 SING N N 24
OCT C8 H83 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OCT SMILES ACDLabs 10.04 CCCCCCCC
OCT SMILES_CANONICAL CACTVS 3.341 CCCCCCCC
OCT SMILES CACTVS 3.341 CCCCCCCC
OCT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCC
OCT SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCC
OCT InChI InChI 1.03 InChI=1S/C8H18/c1-3-5-7-8-6-4-2/h3-8H2,1-2H3
OCT InChIKey InChI 1.03 TVMXDCGIABBOFY-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OCT "SYSTEMATIC NAME" ACDLabs 10.04 octane
OCT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 octane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OCT 'Create component' 1999-07-08 PDBJ
OCT 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OCT C1 C 3.000 0.375 1
OCT C2 C 4.299 -0.375 2
OCT C3 C 5.598 0.375 3
OCT C4 C 6.897 -0.375 4
OCT C5 C 8.196 0.375 5
OCT C6 C 9.495 -0.375 6
OCT C7 C 10.794 0.375 7
OCT C8 C 12.093 -0.375 8
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OCT C1 C2 SINGLE NONE 1
OCT C2 C3 SINGLE NONE 2
OCT C3 C4 SINGLE NONE 3
OCT C4 C5 SINGLE NONE 4
OCT C5 C6 SINGLE NONE 5
OCT C6 C7 SINGLE NONE 6
OCT C7 C8 SINGLE NONE 7
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id OCT
_pdbe_chem_comp_rdkit_properties.exactmw 114.141
_pdbe_chem_comp_rdkit_properties.amw 114.232
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 8
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 78.583
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.367
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.050
_pdbe_chem_comp_rdkit_properties.chi0v 4
_pdbe_chem_comp_rdkit_properties.chi1v 1.750
_pdbe_chem_comp_rdkit_properties.chi2v 0.312
_pdbe_chem_comp_rdkit_properties.chi3v 0.312
_pdbe_chem_comp_rdkit_properties.chi4v 0.125
_pdbe_chem_comp_rdkit_properties.chi0n 22
_pdbe_chem_comp_rdkit_properties.chi1n 10.750
_pdbe_chem_comp_rdkit_properties.chi2n 0.312
_pdbe_chem_comp_rdkit_properties.chi3n 0.312
_pdbe_chem_comp_rdkit_properties.chi4n 0.125
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0
_pdbe_chem_comp_rdkit_properties.kappa1 0.627
_pdbe_chem_comp_rdkit_properties.kappa2 7
_pdbe_chem_comp_rdkit_properties.kappa3 6
_pdbe_chem_comp_rdkit_properties.Phi 0.549
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OCT UniChem ChEMBL CHEMBL134886
OCT UniChem PDBe OCT
OCT UniChem 'KEGG LIGAND' C01387
OCT UniChem ChEBI 17590
OCT UniChem ZINC ZINC000001529191
OCT UniChem fdasrs X1RV0B2FJV
OCT UniChem HMDB HMDB0001485
OCT UniChem NMRShiftDB 10016354
OCT UniChem ACTor 111-65-9
OCT UniChem LipidMaps LMFA11000002
OCT UniChem BRENDA 12638
OCT UniChem BRENDA 32341
OCT UniChem Rhea 17590
OCT UniChem ChemicalBook CB2124951
OCT UniChem 'EPA CompTox Dashboard' DTXSID0026882
OCT UniChem eMolecules 495707
OCT UniChem SureChEMBL SCHEMBL3298
OCT UniChem 'PubChem TPHARMA' 15146476
OCT UniChem PubChem 356
OCT UniChem Mcule MCULE-3248084959
OCT UniChem ACTor 50985-84-7
OCT UniChem ACTor 68553-14-0
OCT UniChem Nikkaji J10.709C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OCT C1 2.962 -1.037 -0.103 ETKDGv3 1
OCT C2 2.125 -0.074 -0.945 ETKDGv3 2
OCT C3 1.659 1.162 -0.156 ETKDGv3 3
OCT C4 0.756 0.858 1.058 ETKDGv3 4
OCT C5 -0.522 0.065 0.734 ETKDGv3 5
OCT C6 -1.446 0.802 -0.251 ETKDGv3 6
OCT C7 -2.826 0.137 -0.373 ETKDGv3 7
OCT C8 -2.768 -1.218 -1.077 ETKDGv3 8
OCT H11 3.801 -0.498 0.385 ETKDGv3 9
OCT H12 2.335 -1.526 0.671 ETKDGv3 10
OCT H13 3.382 -1.829 -0.758 ETKDGv3 11
OCT H21 2.750 0.276 -1.795 ETKDGv3 12
OCT H22 1.257 -0.611 -1.381 ETKDGv3 13
OCT H31 2.554 1.714 0.205 ETKDGv3 14
OCT H32 1.127 1.849 -0.848 ETKDGv3 15
OCT H41 0.469 1.822 1.530 ETKDGv3 16
OCT H42 1.340 0.299 1.820 ETKDGv3 17
OCT H51 -0.254 -0.936 0.338 ETKDGv3 18
OCT H52 -1.069 -0.097 1.688 ETKDGv3 19
OCT H61 -1.597 1.844 0.105 ETKDGv3 20
OCT H62 -0.975 0.851 -1.256 ETKDGv3 21
OCT H71 -3.283 0.015 0.633 ETKDGv3 22
OCT H72 -3.488 0.808 -0.963 ETKDGv3 23
OCT H81 -3.799 -1.595 -1.239 ETKDGv3 24
OCT H82 -2.268 -1.122 -2.065 ETKDGv3 25
OCT H83 -2.222 -1.959 -0.457 ETKDGv3 26
#