data_OH1 # _chem_comp.id OH1 _chem_comp.name N-{4-[4-(hydroxymethyl)-1H-imidazol-2-yl]butyl}benzamide _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H19 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-24 _chem_comp.pdbx_modified_date 2019-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OH1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6PG9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OH1 C10 C1 C 0 1 N N N N N N 18.524 -87.676 29.378 -0.947 0.412 0.182 C10 OH1 1 OH1 C13 C2 C 0 1 Y N N N N N 21.133 -88.257 32.229 -4.744 0.296 0.039 C13 OH1 2 OH1 C15 C3 C 0 1 Y N N N N N 21.596 -90.147 33.638 -7.109 0.715 0.065 C15 OH1 3 OH1 C17 C4 C 0 1 Y N N N N N 22.626 -88.045 34.109 -6.285 -1.477 -0.458 C17 OH1 4 OH1 O01 O1 O 0 1 N N N N N N 26.060 -85.691 24.805 7.879 1.143 -0.070 O01 OH1 5 OH1 C02 C5 C 0 1 N N N N N N 24.941 -85.081 25.426 6.617 1.315 -0.718 C02 OH1 6 OH1 C03 C6 C 0 1 Y N N N N N 23.755 -86.043 25.612 5.656 0.261 -0.231 C03 OH1 7 OH1 C04 C7 C 0 1 Y N N N N N 23.611 -87.309 25.075 5.924 -0.697 0.676 C04 OH1 8 OH1 N05 N1 N 0 1 Y N N N N N 22.428 -87.778 25.460 4.780 -1.434 0.825 N05 OH1 9 OH1 C06 C8 C 0 1 Y N N N N N 21.840 -86.862 26.260 3.852 -0.900 0.002 C06 OH1 10 OH1 C07 C9 C 0 1 N N N N N N 20.459 -86.996 26.930 2.437 -1.392 -0.162 C07 OH1 11 OH1 C08 C10 C 0 1 N N N N N N 20.136 -88.393 27.527 1.463 -0.240 0.094 C08 OH1 12 OH1 C09 C11 C 0 1 N N N N N N 18.695 -88.484 28.089 0.027 -0.740 -0.074 C09 OH1 13 OH1 N11 N2 N 0 1 N N N N N N 19.271 -88.286 30.464 -2.323 -0.067 0.022 N11 OH1 14 OH1 C12 C12 C 0 1 N N N N N N 20.378 -87.621 31.064 -3.356 0.780 0.200 C12 OH1 15 OH1 C14 C13 C 0 1 Y N N N N N 20.948 -89.582 32.539 -5.816 1.171 0.223 C14 OH1 16 OH1 C16 C14 C 0 1 Y N N N N N 22.438 -89.375 34.423 -7.343 -0.606 -0.275 C16 OH1 17 OH1 C18 C15 C 0 1 Y N N N N N 21.970 -87.470 33.009 -4.987 -1.035 -0.304 C18 OH1 18 OH1 O19 O2 O 0 1 N N N N N N 20.659 -86.539 30.717 -3.147 1.941 0.494 O19 OH1 19 OH1 N20 N3 N 0 1 Y N N N N N 22.670 -85.818 26.340 4.381 0.117 -0.622 N20 OH1 20 OH1 H1 H1 H 0 1 N N N N N N 18.893 -86.653 29.215 -0.809 0.786 1.196 H1 OH1 21 OH1 H2 H2 H 0 1 N N N N N N 17.458 -87.643 29.646 -0.757 1.214 -0.531 H2 OH1 22 OH1 H3 H3 H 0 1 N N N N N N 21.441 -91.189 33.878 -7.939 1.390 0.207 H3 OH1 23 OH1 H4 H4 H 0 1 N N N N N N 23.284 -87.440 34.715 -6.474 -2.507 -0.724 H4 OH1 24 OH1 H5 H5 H 0 1 N N N N N N 26.759 -85.054 24.716 8.549 1.789 -0.336 H5 OH1 25 OH1 H6 H6 H 0 1 N N N N N N 25.249 -84.709 26.415 6.221 2.303 -0.485 H6 OH1 26 OH1 H7 H7 H 0 1 N N N N N N 24.612 -84.236 24.803 6.746 1.219 -1.796 H7 OH1 27 OH1 H8 H8 H 0 1 N N N N N N 24.330 -87.824 24.455 6.862 -0.854 1.188 H8 OH1 28 OH1 H9 H9 H 0 1 N N N N N N 22.038 -88.662 25.201 4.659 -2.197 1.411 H9 OH1 29 OH1 H10 H10 H 0 1 N N N N N N 20.405 -86.259 27.745 2.298 -1.767 -1.176 H10 OH1 30 OH1 H11 H11 H 0 1 N N N N N N 19.693 -86.765 26.175 2.246 -2.194 0.551 H11 OH1 31 OH1 H12 H12 H 0 1 N N N N N N 20.254 -89.149 26.737 1.602 0.134 1.108 H12 OH1 32 OH1 H13 H13 H 0 1 N N N N N N 20.845 -88.600 28.342 1.654 0.562 -0.619 H13 OH1 33 OH1 H14 H14 H 0 1 N N N N N N 17.995 -88.098 27.333 -0.164 -1.542 0.639 H14 OH1 34 OH1 H15 H15 H 0 1 N N N N N N 18.463 -89.539 28.299 -0.112 -1.115 -1.088 H15 OH1 35 OH1 H16 H16 H 0 1 N N N N N N 19.003 -89.190 30.797 -2.490 -0.993 -0.212 H16 OH1 36 OH1 H17 H17 H 0 1 N N N N N N 20.297 -90.190 31.929 -5.635 2.202 0.488 H17 OH1 37 OH1 H18 H18 H 0 1 N N N N N N 22.942 -89.811 35.273 -8.357 -0.958 -0.397 H18 OH1 38 OH1 H19 H19 H 0 1 N N N N N N 22.115 -86.426 32.772 -4.162 -1.716 -0.448 H19 OH1 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OH1 O01 C02 SING N N 1 OH1 C04 N05 SING Y N 2 OH1 C04 C03 DOUB Y N 3 OH1 C02 C03 SING N N 4 OH1 N05 C06 SING Y N 5 OH1 C03 N20 SING Y N 6 OH1 C06 N20 DOUB Y N 7 OH1 C06 C07 SING N N 8 OH1 C07 C08 SING N N 9 OH1 C08 C09 SING N N 10 OH1 C09 C10 SING N N 11 OH1 C10 N11 SING N N 12 OH1 N11 C12 SING N N 13 OH1 O19 C12 DOUB N N 14 OH1 C12 C13 SING N N 15 OH1 C13 C14 DOUB Y N 16 OH1 C13 C18 SING Y N 17 OH1 C14 C15 SING Y N 18 OH1 C18 C17 DOUB Y N 19 OH1 C15 C16 DOUB Y N 20 OH1 C17 C16 SING Y N 21 OH1 C10 H1 SING N N 22 OH1 C10 H2 SING N N 23 OH1 C15 H3 SING N N 24 OH1 C17 H4 SING N N 25 OH1 O01 H5 SING N N 26 OH1 C02 H6 SING N N 27 OH1 C02 H7 SING N N 28 OH1 C04 H8 SING N N 29 OH1 N05 H9 SING N N 30 OH1 C07 H10 SING N N 31 OH1 C07 H11 SING N N 32 OH1 C08 H12 SING N N 33 OH1 C08 H13 SING N N 34 OH1 C09 H14 SING N N 35 OH1 C09 H15 SING N N 36 OH1 N11 H16 SING N N 37 OH1 C14 H17 SING N N 38 OH1 C16 H18 SING N N 39 OH1 C18 H19 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OH1 SMILES ACDLabs 12.01 C(NC(c1ccccc1)=O)CCCc2ncc(CO)n2 OH1 InChI InChI 1.03 InChI=1S/C15H19N3O2/c19-11-13-10-17-14(18-13)8-4-5-9-16-15(20)12-6-2-1-3-7-12/h1-3,6-7,10,19H,4-5,8-9,11H2,(H,16,20)(H,17,18) OH1 InChIKey InChI 1.03 JCUWYBMNDMMIAC-UHFFFAOYSA-N OH1 SMILES_CANONICAL CACTVS 3.385 OCc1c[nH]c(CCCCNC(=O)c2ccccc2)n1 OH1 SMILES CACTVS 3.385 OCc1c[nH]c(CCCCNC(=O)c2ccccc2)n1 OH1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)C(=O)NCCCCc2[nH]cc(n2)CO OH1 SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)C(=O)NCCCCc2[nH]cc(n2)CO # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OH1 "SYSTEMATIC NAME" ACDLabs 12.01 N-{4-[4-(hydroxymethyl)-1H-imidazol-2-yl]butyl}benzamide OH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-[4-[4-(hydroxymethyl)-1~{H}-imidazol-2-yl]butyl]benzamide # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OH1 'Create component' 2019-06-24 RCSB OH1 'Initial release' 2019-12-11 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal OH1 C10 C 5.598 -1.697 1 OH1 C13 C 4.299 -5.447 2 OH1 C15 C 3.000 -7.697 3 OH1 C17 C 5.598 -7.697 4 OH1 O01 O 9.218 7.695 5 OH1 C02 C 9.828 6.325 6 OH1 C03 C 8.946 5.111 7 OH1 C04 C 7.446 5.111 8 OH1 N05 N 6.983 3.684 9 OH1 C06 C 8.196 2.803 10 OH1 C07 C 8.196 1.303 11 OH1 C08 C 6.897 0.553 12 OH1 C09 C 6.897 -0.947 13 OH1 N11 N 5.598 -3.197 14 OH1 C12 C 4.299 -3.947 15 OH1 C14 C 3.000 -6.197 16 OH1 C16 C 4.299 -8.447 17 OH1 C18 C 5.598 -6.197 18 OH1 O19 O 3.000 -3.197 19 OH1 N20 N 9.410 3.684 20 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal OH1 O01 C02 SINGLE NONE 1 OH1 C04 N05 SINGLE NONE 2 OH1 C04 C03 DOUBLE NONE 3 OH1 C02 C03 SINGLE NONE 4 OH1 N05 C06 SINGLE NONE 5 OH1 C03 N20 SINGLE NONE 6 OH1 C06 N20 DOUBLE NONE 7 OH1 C06 C07 SINGLE NONE 8 OH1 C07 C08 SINGLE NONE 9 OH1 C08 C09 SINGLE NONE 10 OH1 C09 C10 SINGLE NONE 11 OH1 C10 N11 SINGLE NONE 12 OH1 N11 C12 SINGLE NONE 13 OH1 O19 C12 DOUBLE NONE 14 OH1 C12 C13 SINGLE NONE 15 OH1 C13 C14 SINGLE NONE 16 OH1 C13 C18 DOUBLE NONE 17 OH1 C14 C15 DOUBLE NONE 18 OH1 C18 C17 SINGLE NONE 19 OH1 C15 C16 SINGLE NONE 20 OH1 C17 C16 DOUBLE NONE 21 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys OH1 MurckoScaffold S1 scaffold 'O=C(NCCCCc1ncc[nH]1)c1ccccc1' InChI=1S/C14H17N3O/c18-14(12-6-2-1-3-7-12)17-9-5-4-8-13-15-10-11-16-13/h1-3,6-7,10-11H,4-5,8-9H2,(H,15,16)(H,17,18) UEOHHAAMLZOCJJ-UHFFFAOYSA-N OH1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N OH1 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N OH1 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal OH1 C10 S1 1 OH1 C13 S1 1 OH1 C15 S1 1 OH1 C17 S1 1 OH1 C03 S1 1 OH1 C04 S1 1 OH1 N05 S1 1 OH1 C06 S1 1 OH1 C07 S1 1 OH1 C08 S1 1 OH1 C09 S1 1 OH1 N11 S1 1 OH1 C12 S1 1 OH1 C14 S1 1 OH1 C16 S1 1 OH1 C18 S1 1 OH1 O19 S1 1 OH1 N20 S1 1 OH1 N11 F1 1 OH1 C12 F1 1 OH1 O19 F1 1 OH1 C13 F1 1 OH1 C03 F2 1 OH1 C04 F2 1 OH1 N05 F2 1 OH1 C06 F2 1 OH1 N20 F2 1 OH1 C13 F3 1 OH1 C14 F3 1 OH1 C15 F3 1 OH1 C16 F3 1 OH1 C17 F3 1 OH1 C18 F3 1 # _pdbe_chem_comp_rdkit_properties.comp_id OH1 _pdbe_chem_comp_rdkit_properties.exactmw 273.148 _pdbe_chem_comp_rdkit_properties.amw 273.336 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 5 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 3 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8 _pdbe_chem_comp_rdkit_properties.NumHBD 3 _pdbe_chem_comp_rdkit_properties.NumHBA 3 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20 _pdbe_chem_comp_rdkit_properties.NumAtoms 39 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 1 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333 _pdbe_chem_comp_rdkit_properties.NumRings 2 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 2 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 144.510 _pdbe_chem_comp_rdkit_properties.tpsa 78.010 _pdbe_chem_comp_rdkit_properties.CrippenClogP 1.491 _pdbe_chem_comp_rdkit_properties.CrippenMR 75.426 _pdbe_chem_comp_rdkit_properties.chi0v 9.658 _pdbe_chem_comp_rdkit_properties.chi1v 5.000 _pdbe_chem_comp_rdkit_properties.chi2v 1.746 _pdbe_chem_comp_rdkit_properties.chi3v 1.746 _pdbe_chem_comp_rdkit_properties.chi4v 0.970 _pdbe_chem_comp_rdkit_properties.chi0n 28.658 _pdbe_chem_comp_rdkit_properties.chi1n 14.303 _pdbe_chem_comp_rdkit_properties.chi2n 1.746 _pdbe_chem_comp_rdkit_properties.chi3n 1.746 _pdbe_chem_comp_rdkit_properties.chi4n 0.970 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.140 _pdbe_chem_comp_rdkit_properties.kappa1 3.542 _pdbe_chem_comp_rdkit_properties.kappa2 7.449 _pdbe_chem_comp_rdkit_properties.kappa3 4.205 _pdbe_chem_comp_rdkit_properties.Phi 1.319 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id OH1 UniChem PDBe OH1 OH1 UniChem PubChem 145704657 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal OH1 C10 -1.112 0.672 -0.957 ETKDGv3 1 OH1 C13 -4.482 -0.902 0.210 ETKDGv3 2 OH1 C15 -6.186 -2.245 1.357 ETKDGv3 3 OH1 C17 -6.819 -0.155 0.275 ETKDGv3 4 OH1 O01 7.763 -0.654 0.008 ETKDGv3 5 OH1 C02 6.866 -0.407 -1.040 ETKDGv3 6 OH1 C03 5.677 0.345 -0.532 ETKDGv3 7 OH1 C04 5.622 1.654 -0.338 ETKDGv3 8 OH1 N05 4.358 1.970 0.219 ETKDGv3 9 OH1 C06 3.732 0.696 0.333 ETKDGv3 10 OH1 C07 2.335 0.505 0.831 ETKDGv3 11 OH1 C08 1.331 0.683 -0.311 ETKDGv3 12 OH1 C09 -0.107 0.495 0.185 ETKDGv3 13 OH1 N11 -2.479 0.521 -0.463 ETKDGv3 14 OH1 C12 -3.063 -0.766 -0.198 ETKDGv3 15 OH1 C14 -4.908 -2.095 0.990 ETKDGv3 16 OH1 C16 -7.188 -1.227 0.985 ETKDGv3 17 OH1 C18 -5.409 0.015 -0.136 ETKDGv3 18 OH1 O19 -2.354 -1.805 -0.296 ETKDGv3 19 OH1 N20 4.467 -0.277 -0.103 ETKDGv3 20 OH1 H1 -0.919 -0.066 -1.766 ETKDGv3 21 OH1 H2 -0.995 1.690 -1.390 ETKDGv3 22 OH1 H3 -6.489 -3.113 1.929 ETKDGv3 23 OH1 H4 -7.553 0.589 -0.004 ETKDGv3 24 OH1 H5 7.372 -1.388 0.549 ETKDGv3 25 OH1 H6 7.381 0.191 -1.821 ETKDGv3 26 OH1 H7 6.539 -1.364 -1.506 ETKDGv3 27 OH1 H8 6.407 2.369 -0.546 ETKDGv3 28 OH1 H9 3.984 2.906 0.488 ETKDGv3 29 OH1 H10 2.132 1.250 1.631 ETKDGv3 30 OH1 H11 2.235 -0.512 1.269 ETKDGv3 31 OH1 H12 1.442 1.703 -0.743 ETKDGv3 32 OH1 H13 1.546 -0.063 -1.109 ETKDGv3 33 OH1 H14 -0.326 1.242 0.980 ETKDGv3 34 OH1 H15 -0.214 -0.522 0.621 ETKDGv3 35 OH1 H16 -3.026 1.392 -0.284 ETKDGv3 36 OH1 H17 -4.183 -2.848 1.274 ETKDGv3 37 OH1 H18 -8.220 -1.353 1.284 ETKDGv3 38 OH1 H19 -5.156 0.874 -0.741 ETKDGv3 39 #