data_OLU
#
_chem_comp.id OLU
_chem_comp.name 2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H6 N2 O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms OXYLUCIFERIN
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-06
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 250.297
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OLU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2D1R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OLU "O6'" O6* O 0 1 N N N N N N 16.670 26.100 10.887 -4.915 -1.615 0.006 "O6'" OLU 1
OLU "C4'" C4* C 0 1 N N N N N N 16.429 25.049 10.303 -4.128 -0.689 0.003 "C4'" OLU 2
OLU "N3'" N3* N 0 1 N N N N N N 17.314 24.123 9.956 -2.834 -0.871 0.000 "N3'" OLU 3
OLU "C2'" C2* C 0 1 N N N N N N 16.764 23.072 9.331 -1.941 0.108 -0.002 "C2'" OLU 4
OLU "S1'" S1* S 0 1 N N N N N N 15.145 23.066 9.100 -2.938 1.592 0.008 "S1'" OLU 5
OLU "C5'" C5* C 0 1 N N N N N N 15.028 24.679 9.909 -4.580 0.766 0.004 "C5'" OLU 6
OLU C2 C2 C 0 1 Y N N N N N 17.572 21.905 8.870 -0.471 -0.001 -0.004 C2 OLU 7
OLU S1 S1 S 0 1 Y N N N N N 19.260 22.005 9.098 0.545 -1.471 -0.007 S1 OLU 8
OLU C5 C5 C 0 1 Y N N N N N 19.363 20.481 8.469 2.120 -0.648 -0.009 C5 OLU 9
OLU C6 C6 C 0 1 Y N N N N N 20.526 19.726 8.302 3.432 -1.053 -0.016 C6 OLU 10
OLU C4 C4 C 0 1 Y N N N N N 18.079 19.867 8.068 1.742 0.721 -0.008 C4 OLU 11
OLU N3 N3 N 0 1 Y N N N N N 17.122 20.761 8.333 0.428 0.960 -0.006 N3 OLU 12
OLU C9 C9 C 0 1 Y N N N N N 18.054 18.591 7.519 2.804 1.663 -0.009 C9 OLU 13
OLU C8 C8 C 0 1 Y N N N N N 19.241 17.879 7.363 4.098 1.253 -0.010 C8 OLU 14
OLU C7 C7 C 0 1 Y N N N N N 20.463 18.435 7.744 4.439 -0.099 -0.011 C7 OLU 15
OLU O7 O7 O 0 1 N N N N N N 21.598 17.690 7.564 5.743 -0.478 -0.013 O7 OLU 16
OLU "H5'1" 1H5* H 0 0 N N N N N N 14.588 25.432 9.239 -5.149 1.007 -0.894 "H5'1" OLU 17
OLU "H5'2" 2H5* H 0 0 N N N N N N 14.379 24.622 10.795 -5.145 1.007 0.905 "H5'2" OLU 18
OLU H6 H6 H 0 1 N N N N N N 21.479 20.135 8.603 3.677 -2.104 -0.022 H6 OLU 19
OLU H9 H9 H 0 1 N N N N N N 17.116 18.152 7.214 2.579 2.719 -0.008 H9 OLU 20
OLU H8 H8 H 0 1 N N N N N N 19.215 16.885 6.942 4.884 1.994 -0.010 H8 OLU 21
OLU HO7 HO7 H 0 1 N N N N N N 21.721 17.517 6.638 6.013 -0.557 0.912 HO7 OLU 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OLU "O6'" "C4'" DOUB N N 1
OLU "C4'" "N3'" SING N N 2
OLU "C4'" "C5'" SING N N 3
OLU "N3'" "C2'" DOUB N N 4
OLU "C2'" "S1'" SING N N 5
OLU "C2'" C2 SING N N 6
OLU "S1'" "C5'" SING N N 7
OLU "C5'" "H5'1" SING N N 8
OLU "C5'" "H5'2" SING N N 9
OLU C2 S1 SING Y N 10
OLU C2 N3 DOUB Y N 11
OLU S1 C5 SING Y N 12
OLU C5 C6 SING Y N 13
OLU C5 C4 DOUB Y N 14
OLU C6 C7 DOUB Y N 15
OLU C6 H6 SING N N 16
OLU C4 N3 SING Y N 17
OLU C4 C9 SING Y N 18
OLU C9 C8 DOUB Y N 19
OLU C9 H9 SING N N 20
OLU C8 C7 SING Y N 21
OLU C8 H8 SING N N 22
OLU C7 O7 SING N N 23
OLU O7 HO7 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OLU SMILES ACDLabs 10.04 O=C1N=C(SC1)c2sc3c(n2)ccc(O)c3
OLU SMILES_CANONICAL CACTVS 3.341 Oc1ccc2nc(sc2c1)C3=NC(=O)CS3
OLU SMILES CACTVS 3.341 Oc1ccc2nc(sc2c1)C3=NC(=O)CS3
OLU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc2c(cc1O)sc(n2)C3=NC(=O)CS3
OLU SMILES "OpenEye OEToolkits" 1.5.0 c1cc2c(cc1O)sc(n2)C3=NC(=O)CS3
OLU InChI InChI 1.03 InChI=1S/C10H6N2O2S2/c13-5-1-2-6-7(3-5)16-10(11-6)9-12-8(14)4-15-9/h1-3,13H,4H2
OLU InChIKey InChI 1.03 JJVOROULKOMTKG-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OLU "SYSTEMATIC NAME" ACDLabs 10.04 2-(6-hydroxy-1,3-benzothiazol-2-yl)-1,3-thiazol-4(5H)-one
OLU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-(6-hydroxy-1,3-benzothiazol-2-yl)-1,3-thiazol-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OLU 'Create component' 2005-09-06 RCSB
OLU 'Modify descriptor' 2011-06-04 RCSB
OLU 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id OLU
_pdbx_chem_comp_synonyms.name OXYLUCIFERIN
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id OLU
_pdbe_chem_comp_drugbank_details.drugbank_id DB08326
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONE
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id OLU
_pdbe_chem_comp_synonyms.name OXYLUCIFERIN
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id OLU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08326
_pdbe_chem_comp_drugbank_classification.parent Benzothiazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Benzothiazoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as benzothiazoles. These are organic compounds containing a benzene fused to a thiazole ring (a five-membered ring with four carbon atoms, one nitrogen atom and one sulfur atom).'
#
_pdbe_chem_comp_drugbank_targets.comp_id OLU
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08326
_pdbe_chem_comp_drugbank_targets.name 'Long-chain-fatty-acid--CoA ligase ACSBG1'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id Q96GR2
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OLU "O6'" O 15.019 1.566 1
OLU "C4'" C 13.806 0.684 2
OLU "N3'" N 12.379 1.148 3
OLU "C2'" C 11.497 -0.066 4
OLU "S1'" S 12.379 -1.279 5
OLU "C5'" C 13.806 -0.816 6
OLU C2 C 9.997 -0.066 7
OLU S1 S 9.122 1.141 8
OLU C5 C 7.702 0.684 9
OLU C6 C 6.404 1.434 10
OLU C4 C 7.702 -0.816 11
OLU N3 N 9.122 -1.273 12
OLU C9 C 6.404 -1.566 13
OLU C8 C 5.104 -0.816 14
OLU C7 C 5.104 0.684 15
OLU O7 O 3.805 1.434 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OLU "O6'" "C4'" DOUBLE NONE 1
OLU "C4'" "N3'" SINGLE NONE 2
OLU "C4'" "C5'" SINGLE NONE 3
OLU "N3'" "C2'" DOUBLE NONE 4
OLU "C2'" "S1'" SINGLE NONE 5
OLU "C2'" C2 SINGLE NONE 6
OLU "S1'" "C5'" SINGLE NONE 7
OLU C2 S1 SINGLE NONE 8
OLU C2 N3 DOUBLE NONE 9
OLU S1 C5 SINGLE NONE 10
OLU C5 C6 DOUBLE NONE 11
OLU C5 C4 SINGLE NONE 12
OLU C6 C7 SINGLE NONE 13
OLU C4 N3 SINGLE NONE 14
OLU C4 C9 DOUBLE NONE 15
OLU C9 C8 SINGLE NONE 16
OLU C8 C7 DOUBLE NONE 17
OLU C7 O7 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OLU MurckoScaffold S1 scaffold O=C1CSC(c2nc3ccccc3s2)=N1 InChI=1S/C10H6N2OS2/c13-8-5-14-9(12-8)10-11-6-3-1-2-4-7(6)15-10/h1-4H,5H2 JWHUYKLQPGRSMM-UHFFFAOYSA-N
OLU benzothiazole F1 fragment c1ccc2scnc2c1 InChI=1S/C7H5NS/c1-2-4-7-6(3-1)8-5-9-7/h1-5H IOJUPLGTWVMSFF-UHFFFAOYSA-N
OLU phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
OLU thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OLU "O6'" S1 1
OLU "C4'" S1 1
OLU "N3'" S1 1
OLU "C2'" S1 1
OLU "S1'" S1 1
OLU "C5'" S1 1
OLU C2 S1 1
OLU S1 S1 1
OLU C5 S1 1
OLU C6 S1 1
OLU C4 S1 1
OLU N3 S1 1
OLU C9 S1 1
OLU C8 S1 1
OLU C7 S1 1
OLU C5 F1 1
OLU S1 F1 1
OLU C2 F1 1
OLU N3 F1 1
OLU C4 F1 1
OLU C9 F1 1
OLU C8 F1 1
OLU C7 F1 1
OLU C6 F1 1
OLU C5 F2 1
OLU C6 F2 1
OLU C7 F2 1
OLU C8 F2 1
OLU C9 F2 1
OLU C4 F2 1
OLU C5 F3 1
OLU C4 F3 1
OLU N3 F3 1
OLU C2 F3 1
OLU S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OLU
_pdbe_chem_comp_rdkit_properties.exactmw 249.987
_pdbe_chem_comp_rdkit_properties.amw 250.304
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.553
_pdbe_chem_comp_rdkit_properties.tpsa 62.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.076
_pdbe_chem_comp_rdkit_properties.CrippenMR 62.205
_pdbe_chem_comp_rdkit_properties.chi0v 9.160
_pdbe_chem_comp_rdkit_properties.chi1v 5.752
_pdbe_chem_comp_rdkit_properties.chi2v 3.631
_pdbe_chem_comp_rdkit_properties.chi3v 3.631
_pdbe_chem_comp_rdkit_properties.chi4v 2.694
_pdbe_chem_comp_rdkit_properties.chi0n 13.527
_pdbe_chem_comp_rdkit_properties.chi1n 7.027
_pdbe_chem_comp_rdkit_properties.chi2n 1.770
_pdbe_chem_comp_rdkit_properties.chi3n 1.770
_pdbe_chem_comp_rdkit_properties.chi4n 1.153
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.400
_pdbe_chem_comp_rdkit_properties.kappa1 5.287
_pdbe_chem_comp_rdkit_properties.kappa2 3.568
_pdbe_chem_comp_rdkit_properties.kappa3 1.595
_pdbe_chem_comp_rdkit_properties.Phi 1.179
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OLU UniChem DrugBank DB08326
OLU UniChem PDBe OLU
OLU UniChem 'KEGG LIGAND' C03797
OLU UniChem ChEBI 16792
OLU UniChem PubChem 135398698
OLU UniChem BRENDA 16308
OLU UniChem BRENDA 221264
OLU UniChem Rhea 16792
OLU UniChem 'Probes And Drugs' PD004503
OLU UniChem Nikkaji J1.760.725A
OLU UniChem SureChEMBL SCHEMBL889204
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OLU "O6'" 5.055 1.902 1.621 ETKDGv3 1
OLU "C4'" 4.327 1.148 0.923 ETKDGv3 2
OLU "N3'" 2.916 1.177 1.024 ETKDGv3 3
OLU "C2'" 2.350 0.333 0.232 ETKDGv3 4
OLU "S1'" 3.443 -0.660 -0.793 ETKDGv3 5
OLU "C5'" 4.886 0.178 -0.051 ETKDGv3 6
OLU C2 0.890 0.201 0.177 ETKDGv3 7
OLU S1 -0.242 1.177 1.187 ETKDGv3 8
OLU C5 -1.635 0.360 0.463 ETKDGv3 9
OLU C6 -2.937 0.528 0.694 ETKDGv3 10
OLU C4 -1.130 -0.605 -0.503 ETKDGv3 11
OLU N3 0.298 -0.645 -0.616 ETKDGv3 12
OLU C9 -1.973 -1.368 -1.204 ETKDGv3 13
OLU C8 -3.434 -1.210 -0.974 ETKDGv3 14
OLU C7 -3.894 -0.313 -0.076 ETKDGv3 15
OLU O7 -5.265 -0.179 0.125 ETKDGv3 16
OLU "H5'1" 5.462 0.709 -0.837 ETKDGv3 17
OLU "H5'2" 5.529 -0.563 0.468 ETKDGv3 18
OLU H6 -3.283 1.253 1.418 ETKDGv3 19
OLU H9 -1.603 -2.087 -1.924 ETKDGv3 20
OLU H8 -4.128 -1.822 -1.535 ETKDGv3 21
OLU HO7 -5.633 0.487 0.793 ETKDGv3 22
#