data_ONQ
#
_chem_comp.id ONQ
_chem_comp.name ~{N}-(2-azanyl-2-oxidanylidene-ethyl)-4-methoxy-benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-23
_chem_comp.pdbx_modified_date 2020-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 208.214
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ONQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YDV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ONQ N1 N1 N 0 1 N N N N N N -2.325 94.214 129.581 5.508 0.289 0.001 N1 ONQ 1
ONQ C4 C1 C 0 1 Y N N N N N -2.683 97.306 124.133 -0.585 -0.445 -0.000 C4 ONQ 2
ONQ C5 C2 C 0 1 Y N N N N N -1.759 98.124 123.452 -1.666 -1.329 -0.001 C5 ONQ 3
ONQ C6 C3 C 0 1 Y N N N N N -1.812 98.262 122.051 -2.953 -0.840 -0.001 C6 ONQ 4
ONQ C7 C4 C 0 1 N N N N N N -2.541 97.255 125.603 0.797 -0.965 -0.000 C7 ONQ 5
ONQ C8 C5 C 0 1 N N N N N N -2.285 95.890 127.685 3.210 -0.627 0.000 C8 ONQ 6
ONQ O2 O1 O 0 1 N N N N N N -2.476 98.273 126.276 0.995 -2.165 -0.001 O2 ONQ 7
ONQ N N2 N 0 1 N N N N N N -2.441 96.010 126.209 1.839 -0.110 0.001 N ONQ 8
ONQ C9 C6 C 0 1 N N N N N N -2.481 94.437 128.214 4.181 0.526 0.001 C9 ONQ 9
ONQ O1 O2 O 0 1 N N N N N N -2.752 93.508 127.466 3.768 1.666 0.002 O1 ONQ 10
ONQ C3 C7 C 0 1 Y N N N N N -3.667 96.620 123.424 -0.814 0.933 -0.005 C3 ONQ 11
ONQ C2 C8 C 0 1 Y N N N N N -3.740 96.739 122.017 -2.104 1.415 -0.004 C2 ONQ 12
ONQ C1 C9 C 0 1 Y N N N N N -2.800 97.565 121.317 -3.177 0.532 0.001 C1 ONQ 13
ONQ O O3 O 0 1 N N N N N N -2.847 97.624 119.920 -4.447 1.010 0.000 O ONQ 14
ONQ C C10 C 0 1 N N N N N N -3.733 96.925 119.077 -5.503 0.047 0.005 C ONQ 15
ONQ H11 H1 H 0 1 N N N N N N -2.435 93.292 129.953 5.838 -0.623 0.001 H11 ONQ 16
ONQ H10 H2 H 0 1 N N N N N N -2.103 94.976 130.190 6.133 1.031 -0.002 H10 ONQ 17
ONQ H5 H3 H 0 1 N N N N N N -1.001 98.652 124.011 -1.493 -2.395 -0.002 H5 ONQ 18
ONQ H6 H4 H 0 1 N N N N N N -1.102 98.896 121.540 -3.790 -1.523 -0.002 H6 ONQ 19
ONQ H8 H5 H 0 1 N N N N N N -1.274 96.226 127.957 3.369 -1.236 0.890 H8 ONQ 20
ONQ H9 H6 H 0 1 N N N N N N -3.030 96.540 128.168 3.369 -1.235 -0.890 H9 ONQ 21
ONQ H7 H7 H 0 1 N N N N N N -2.474 95.183 125.647 1.681 0.847 0.001 H7 ONQ 22
ONQ H4 H8 H 0 1 N N N N N N -4.375 95.997 123.950 0.020 1.620 -0.008 H4 ONQ 23
ONQ H3 H9 H 0 1 N N N N N N -4.504 96.207 121.469 -2.282 2.480 -0.008 H3 ONQ 24
ONQ H1 H10 H 0 1 N N N N N N -3.521 97.181 118.028 -5.427 -0.581 -0.882 H1 ONQ 25
ONQ H2 H11 H 0 1 N N N N N N -3.602 95.843 119.224 -5.424 -0.574 0.898 H2 ONQ 26
ONQ H H12 H 0 1 N N N N N N -4.768 97.205 119.321 -6.464 0.562 0.005 H ONQ 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ONQ C O SING N N 1
ONQ O C1 SING N N 2
ONQ C1 C2 DOUB Y N 3
ONQ C1 C6 SING Y N 4
ONQ C2 C3 SING Y N 5
ONQ C6 C5 DOUB Y N 6
ONQ C3 C4 DOUB Y N 7
ONQ C5 C4 SING Y N 8
ONQ C4 C7 SING N N 9
ONQ C7 N SING N N 10
ONQ C7 O2 DOUB N N 11
ONQ N C8 SING N N 12
ONQ O1 C9 DOUB N N 13
ONQ C8 C9 SING N N 14
ONQ C9 N1 SING N N 15
ONQ N1 H11 SING N N 16
ONQ N1 H10 SING N N 17
ONQ C5 H5 SING N N 18
ONQ C6 H6 SING N N 19
ONQ C8 H8 SING N N 20
ONQ C8 H9 SING N N 21
ONQ N H7 SING N N 22
ONQ C3 H4 SING N N 23
ONQ C2 H3 SING N N 24
ONQ C H1 SING N N 25
ONQ C H2 SING N N 26
ONQ C H SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ONQ InChI InChI 1.03 InChI=1S/C10H12N2O3/c1-15-8-4-2-7(3-5-8)10(14)12-6-9(11)13/h2-5H,6H2,1H3,(H2,11,13)(H,12,14)
ONQ InChIKey InChI 1.03 ZKADLOGPYJUFCB-UHFFFAOYSA-N
ONQ SMILES_CANONICAL CACTVS 3.385 COc1ccc(cc1)C(=O)NCC(N)=O
ONQ SMILES CACTVS 3.385 COc1ccc(cc1)C(=O)NCC(N)=O
ONQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)C(=O)NCC(=O)N
ONQ SMILES "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)C(=O)NCC(=O)N
#
_pdbx_chem_comp_identifier.comp_id ONQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-(2-azanyl-2-oxidanylidene-ethyl)-4-methoxy-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ONQ 'Create component' 2020-03-23 PDBE
ONQ 'Initial release' 2020-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ONQ N1 N 6.897 5.393 1
ONQ C4 C 4.299 -0.608 2
ONQ C5 C 3.000 -1.357 3
ONQ C6 C 3.000 -2.857 4
ONQ C7 C 4.299 0.892 5
ONQ C8 C 5.598 3.143 6
ONQ O2 O 3.000 1.643 7
ONQ N N 5.598 1.643 8
ONQ C9 C 6.897 3.893 9
ONQ O1 O 8.196 3.143 10
ONQ C3 C 5.598 -1.357 11
ONQ C2 C 5.598 -2.857 12
ONQ C1 C 4.299 -3.607 13
ONQ O O 4.299 -5.107 14
ONQ C C 3.000 -5.857 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ONQ C O SINGLE NONE 1
ONQ O C1 SINGLE NONE 2
ONQ C1 C2 DOUBLE NONE 3
ONQ C1 C6 SINGLE NONE 4
ONQ C2 C3 SINGLE NONE 5
ONQ C6 C5 DOUBLE NONE 6
ONQ C3 C4 DOUBLE NONE 7
ONQ C5 C4 SINGLE NONE 8
ONQ C4 C7 SINGLE NONE 9
ONQ C7 N SINGLE NONE 10
ONQ C7 O2 DOUBLE NONE 11
ONQ N C8 SINGLE NONE 12
ONQ O1 C9 DOUBLE NONE 13
ONQ C8 C9 SINGLE NONE 14
ONQ C9 N1 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ONQ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ONQ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ONQ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
ONQ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ONQ Z33546965 F4 fragment COc1ccc(C(=O)NCC(N)=O)cc1 InChI=1S/C10H12N2O3/c1-15-8-4-2-7(3-5-8)10(14)12-6-9(11)13/h2-5H,6H2,1H3,(H2,11,13)(H,12,14) ZKADLOGPYJUFCB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ONQ C4 S1 1
ONQ C5 S1 1
ONQ C6 S1 1
ONQ C3 S1 1
ONQ C2 S1 1
ONQ C1 S1 1
ONQ N1 F1 1
ONQ C9 F1 1
ONQ O1 F1 1
ONQ C8 F1 1
ONQ N F1 2
ONQ C7 F1 2
ONQ O2 F1 2
ONQ C4 F1 2
ONQ O1 F2 1
ONQ C9 F2 1
ONQ C8 F2 1
ONQ N F2 1
ONQ C4 F3 1
ONQ C3 F3 1
ONQ C2 F3 1
ONQ C1 F3 1
ONQ C6 F3 1
ONQ C5 F3 1
ONQ C F4 1
ONQ O F4 1
ONQ C1 F4 1
ONQ C2 F4 1
ONQ C3 F4 1
ONQ C4 F4 1
ONQ C5 F4 1
ONQ C6 F4 1
ONQ C7 F4 1
ONQ O2 F4 1
ONQ N F4 1
ONQ C8 F4 1
ONQ C9 F4 1
ONQ O1 F4 1
ONQ N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ONQ
_pdbe_chem_comp_rdkit_properties.exactmw 208.085
_pdbe_chem_comp_rdkit_properties.amw 208.217
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 104.251
_pdbe_chem_comp_rdkit_properties.tpsa 81.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.607
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.646
_pdbe_chem_comp_rdkit_properties.chi0v 7.119
_pdbe_chem_comp_rdkit_properties.chi1v 3.487
_pdbe_chem_comp_rdkit_properties.chi2v 1.171
_pdbe_chem_comp_rdkit_properties.chi3v 1.171
_pdbe_chem_comp_rdkit_properties.chi4v 0.613
_pdbe_chem_comp_rdkit_properties.chi0n 19.119
_pdbe_chem_comp_rdkit_properties.chi1n 9.329
_pdbe_chem_comp_rdkit_properties.chi2n 1.171
_pdbe_chem_comp_rdkit_properties.chi3n 1.171
_pdbe_chem_comp_rdkit_properties.chi4n 0.613
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.040
_pdbe_chem_comp_rdkit_properties.kappa1 2.976
_pdbe_chem_comp_rdkit_properties.kappa2 4.995
_pdbe_chem_comp_rdkit_properties.kappa3 3.300
_pdbe_chem_comp_rdkit_properties.Phi 0.991
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ONQ UniChem PDBe ONQ
ONQ UniChem ZINC ZINC000000040120
ONQ UniChem eMolecules 1958528
ONQ UniChem PubChem 676771
ONQ UniChem 'EPA CompTox Dashboard' DTXSID50350340
ONQ UniChem Mcule MCULE-8294224146
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ONQ N1 -4.914 1.346 0.250 ETKDGv3 1
ONQ C4 0.271 -0.845 0.397 ETKDGv3 2
ONQ C5 1.055 -2.014 -0.078 ETKDGv3 3
ONQ C6 2.297 -1.852 -0.550 ETKDGv3 4
ONQ C7 -1.097 -1.052 0.929 ETKDGv3 5
ONQ C8 -3.364 -0.154 1.588 ETKDGv3 6
ONQ O2 -1.417 -2.188 1.375 ETKDGv3 7
ONQ N -2.069 0.006 0.927 ETKDGv3 8
ONQ C9 -4.186 1.092 1.451 ETKDGv3 9
ONQ O1 -4.203 1.938 2.384 ETKDGv3 10
ONQ C3 0.838 0.376 0.362 ETKDGv3 11
ONQ C2 2.209 0.552 -0.162 ETKDGv3 12
ONQ C1 2.913 -0.510 -0.601 ETKDGv3 13
ONQ O 4.218 -0.399 -1.107 ETKDGv3 14
ONQ C 4.943 0.822 -1.219 ETKDGv3 15
ONQ H11 -4.888 0.665 -0.541 ETKDGv3 16
ONQ H10 -5.476 2.220 0.149 ETKDGv3 17
ONQ H5 0.623 -3.007 -0.055 ETKDGv3 18
ONQ H6 2.856 -2.711 -0.898 ETKDGv3 19
ONQ H8 -3.203 -0.376 2.666 ETKDGv3 20
ONQ H9 -3.911 -1.007 1.134 ETKDGv3 21
ONQ H7 -1.872 0.884 0.396 ETKDGv3 22
ONQ H4 0.322 1.248 0.739 ETKDGv3 23
ONQ H3 2.626 1.549 -0.178 ETKDGv3 24
ONQ H1 5.943 0.611 -1.652 ETKDGv3 25
ONQ H2 5.079 1.279 -0.216 ETKDGv3 26
ONQ H 4.407 1.525 -1.891 ETKDGv3 27
#