data_OSY
#
_chem_comp.id OSY
_chem_comp.name 7-[4-(aminomethyl)phenyl]-4-methylquinolin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H17 N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-03
_chem_comp.pdbx_modified_date 2020-04-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 263.337
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OSY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PNB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OSY N28 N1 N 0 1 N N N N N N 124.766 250.935 356.298 -6.505 0.466 1.042 N28 OSY 1
OSY C27 C1 C 0 1 N N N N N N 123.766 251.980 356.601 -5.968 0.368 -0.322 C27 OSY 2
OSY C24 C2 C 0 1 Y N N N N N 122.582 251.425 357.381 -4.475 0.170 -0.259 C24 OSY 3
OSY C23 C3 C 0 1 Y N N N N N 121.399 252.154 357.479 -3.951 -1.109 -0.208 C23 OSY 4
OSY C22 C4 C 0 1 Y N N N N N 120.309 251.654 358.188 -2.585 -1.297 -0.151 C22 OSY 5
OSY C25 C5 C 0 1 Y N N N N N 122.672 250.182 357.998 -3.634 1.268 -0.260 C25 OSY 6
OSY C26 C6 C 0 1 Y N N N N N 121.580 249.681 358.697 -2.266 1.092 -0.204 C26 OSY 7
OSY C21 C7 C 0 1 Y N N N N N 120.391 250.402 358.784 -1.733 -0.194 -0.146 C21 OSY 8
OSY C08 C8 C 0 1 Y N N N N N 119.309 249.767 359.591 -0.263 -0.389 -0.084 C08 OSY 9
OSY C09 C9 C 0 1 Y N N N N N 118.996 248.429 359.381 0.574 0.712 -0.073 C09 OSY 10
OSY C07 C10 C 0 1 Y N N N N N 118.657 250.473 360.600 0.264 -1.688 -0.031 C07 OSY 11
OSY C06 C11 C 0 1 Y N N N N N 117.693 249.845 361.377 1.607 -1.891 0.026 C06 OSY 12
OSY C05 C12 C 0 1 Y N N N N N 117.370 248.511 361.145 2.483 -0.793 0.033 C05 OSY 13
OSY C04 C13 C 0 1 Y N N N N N 116.411 247.863 361.914 3.879 -0.977 0.092 C04 OSY 14
OSY C11 C14 C 0 1 N N N N N N 115.748 248.653 362.995 4.474 -2.360 0.149 C11 OSY 15
OSY C03 C15 C 0 1 Y N N N N N 116.094 246.524 361.682 4.677 0.127 0.097 C03 OSY 16
OSY C02 C16 C 0 1 Y N N N N N 116.773 245.857 360.658 4.103 1.405 0.042 C02 OSY 17
OSY N02 N2 N 0 1 N N N N N N 116.530 244.553 360.356 4.928 2.520 0.047 N02 OSY 18
OSY N01 N3 N 0 1 Y N N N N N 117.708 246.515 359.938 2.797 1.571 -0.013 N01 OSY 19
OSY C10 C17 C 0 1 Y N N N N N 118.018 247.808 360.149 1.963 0.525 -0.015 C10 OSY 20
OSY H1 H1 H 0 1 N N N N N N 125.525 251.338 355.787 -6.050 1.204 1.558 H1 OSY 21
OSY H2 H2 H 0 1 N N N N N N 125.109 250.545 357.152 -7.505 0.599 1.027 H2 OSY 22
OSY H4 H4 H 0 1 N N N N N N 124.246 252.769 357.198 -6.425 -0.479 -0.832 H4 OSY 23
OSY H5 H5 H 0 1 N N N N N N 123.400 252.407 355.655 -6.190 1.285 -0.867 H5 OSY 24
OSY H6 H6 H 0 1 N N N N N N 121.326 253.119 356.999 -4.612 -1.963 -0.212 H6 OSY 25
OSY H7 H7 H 0 1 N N N N N N 119.404 252.237 358.274 -2.177 -2.296 -0.110 H7 OSY 26
OSY H8 H8 H 0 1 N N N N N N 123.585 249.609 357.934 -4.048 2.264 -0.305 H8 OSY 27
OSY H9 H9 H 0 1 N N N N N N 121.654 248.718 359.180 -1.610 1.951 -0.205 H9 OSY 28
OSY H10 H10 H 0 1 N N N N N N 119.515 247.869 358.617 0.161 1.709 -0.110 H10 OSY 29
OSY H11 H11 H 0 1 N N N N N N 118.902 251.510 360.778 -0.404 -2.536 -0.036 H11 OSY 30
OSY H12 H12 H 0 1 N N N N N N 117.193 250.392 362.163 2.000 -2.896 0.067 H12 OSY 31
OSY H13 H13 H 0 1 N N N N N N 114.847 249.141 362.594 4.658 -2.719 -0.863 H13 OSY 32
OSY H14 H14 H 0 1 N N N N N N 115.465 247.981 363.819 5.414 -2.329 0.700 H14 OSY 33
OSY H15 H15 H 0 1 N N N N N N 116.444 249.419 363.369 3.780 -3.034 0.653 H15 OSY 34
OSY H16 H16 H 0 1 N N N N N N 115.347 246.018 362.276 5.751 0.019 0.142 H16 OSY 35
OSY H17 H17 H 0 1 N N N N N N 117.120 244.270 359.600 5.891 2.410 0.087 H17 OSY 36
OSY H18 H18 H 0 1 N N N N N N 116.719 243.985 361.157 4.543 3.409 0.010 H18 OSY 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OSY N28 C27 SING N N 1
OSY C27 C24 SING N N 2
OSY C24 C23 DOUB Y N 3
OSY C24 C25 SING Y N 4
OSY C23 C22 SING Y N 5
OSY C25 C26 DOUB Y N 6
OSY C22 C21 DOUB Y N 7
OSY C26 C21 SING Y N 8
OSY C21 C08 SING N N 9
OSY C09 C08 DOUB Y N 10
OSY C09 C10 SING Y N 11
OSY C08 C07 SING Y N 12
OSY N01 C10 DOUB Y N 13
OSY N01 C02 SING Y N 14
OSY C10 C05 SING Y N 15
OSY N02 C02 SING N N 16
OSY C07 C06 DOUB Y N 17
OSY C02 C03 DOUB Y N 18
OSY C05 C06 SING Y N 19
OSY C05 C04 DOUB Y N 20
OSY C03 C04 SING Y N 21
OSY C04 C11 SING N N 22
OSY N28 H1 SING N N 23
OSY N28 H2 SING N N 24
OSY C27 H4 SING N N 25
OSY C27 H5 SING N N 26
OSY C23 H6 SING N N 27
OSY C22 H7 SING N N 28
OSY C25 H8 SING N N 29
OSY C26 H9 SING N N 30
OSY C09 H10 SING N N 31
OSY C07 H11 SING N N 32
OSY C06 H12 SING N N 33
OSY C11 H13 SING N N 34
OSY C11 H14 SING N N 35
OSY C11 H15 SING N N 36
OSY C03 H16 SING N N 37
OSY N02 H17 SING N N 38
OSY N02 H18 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OSY SMILES ACDLabs 12.01 NCc1ccc(cc1)c2ccc3c(C)cc(N)nc3c2
OSY InChI InChI 1.03 InChI=1S/C17H17N3/c1-11-8-17(19)20-16-9-14(6-7-15(11)16)13-4-2-12(10-18)3-5-13/h2-9H,10,18H2,1H3,(H2,19,20)
OSY InChIKey InChI 1.03 ODOXISOTMVXLOX-UHFFFAOYSA-N
OSY SMILES_CANONICAL CACTVS 3.385 Cc1cc(N)nc2cc(ccc12)c3ccc(CN)cc3
OSY SMILES CACTVS 3.385 Cc1cc(N)nc2cc(ccc12)c3ccc(CN)cc3
OSY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1cc(nc2c1ccc(c2)c3ccc(cc3)CN)N
OSY SMILES "OpenEye OEToolkits" 2.0.7 Cc1cc(nc2c1ccc(c2)c3ccc(cc3)CN)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OSY "SYSTEMATIC NAME" ACDLabs 12.01 7-[4-(aminomethyl)phenyl]-4-methylquinolin-2-amine
OSY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 7-[4-(aminomethyl)phenyl]-4-methyl-quinolin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OSY 'Create component' 2019-07-03 RCSB
OSY 'Initial release' 2020-04-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OSY N28 N 3.804 -2.656 1
OSY C27 C 5.106 -3.401 2
OSY C24 C 6.402 -2.646 3
OSY C23 C 7.704 -3.391 4
OSY C22 C 9.000 -2.636 5
OSY C25 C 6.396 -1.146 6
OSY C26 C 7.692 -0.391 7
OSY C21 C 8.994 -1.136 8
OSY C08 C 10.290 -0.381 9
OSY C09 C 11.649 -1.151 10
OSY C07 C 10.290 1.182 11
OSY C06 C 11.649 1.953 12
OSY C05 C 12.990 1.151 13
OSY C04 C 14.289 1.901 14
OSY C11 C 14.289 3.401 15
OSY C03 C 15.588 1.151 16
OSY C02 C 15.588 -0.349 17
OSY N02 N 16.887 -1.099 18
OSY N01 N 14.289 -1.099 19
OSY C10 C 12.990 -0.349 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OSY N28 C27 SINGLE NONE 1
OSY C27 C24 SINGLE NONE 2
OSY C24 C23 DOUBLE NONE 3
OSY C24 C25 SINGLE NONE 4
OSY C23 C22 SINGLE NONE 5
OSY C25 C26 DOUBLE NONE 6
OSY C22 C21 DOUBLE NONE 7
OSY C26 C21 SINGLE NONE 8
OSY C21 C08 SINGLE NONE 9
OSY C09 C08 DOUBLE NONE 10
OSY C09 C10 SINGLE NONE 11
OSY C08 C07 SINGLE NONE 12
OSY N01 C10 DOUBLE NONE 13
OSY N01 C02 SINGLE NONE 14
OSY C10 C05 SINGLE NONE 15
OSY N02 C02 SINGLE NONE 16
OSY C07 C06 DOUBLE NONE 17
OSY C02 C03 DOUBLE NONE 18
OSY C05 C06 SINGLE NONE 19
OSY C05 C04 DOUBLE NONE 20
OSY C03 C04 SINGLE NONE 21
OSY C04 C11 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OSY MurckoScaffold S1 scaffold c1ccc(-c2ccc3cccnc3c2)cc1 InChI=1S/C15H11N/c1-2-5-12(6-3-1)14-9-8-13-7-4-10-16-15(13)11-14/h1-11H PKELCHHNTDXTOM-UHFFFAOYSA-N
OSY phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
OSY pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
OSY quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OSY C24 S1 1
OSY C23 S1 1
OSY C22 S1 1
OSY C25 S1 1
OSY C26 S1 1
OSY C21 S1 1
OSY C08 S1 1
OSY C09 S1 1
OSY C07 S1 1
OSY C06 S1 1
OSY C05 S1 1
OSY C04 S1 1
OSY C03 S1 1
OSY C02 S1 1
OSY N01 S1 1
OSY C10 S1 1
OSY C24 F1 1
OSY C23 F1 1
OSY C22 F1 1
OSY C21 F1 1
OSY C26 F1 1
OSY C25 F1 1
OSY C08 F1 2
OSY C09 F1 2
OSY C10 F1 2
OSY C05 F1 2
OSY C06 F1 2
OSY C07 F1 2
OSY C02 F2 1
OSY C03 F2 1
OSY C04 F2 1
OSY C05 F2 1
OSY C10 F2 1
OSY N01 F2 1
OSY C07 F3 1
OSY C06 F3 1
OSY C05 F3 1
OSY C10 F3 1
OSY C09 F3 1
OSY C08 F3 1
OSY N01 F3 1
OSY C02 F3 1
OSY C03 F3 1
OSY C04 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OSY
_pdbe_chem_comp_rdkit_properties.exactmw 263.142
_pdbe_chem_comp_rdkit_properties.amw 263.344
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.118
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 141.916
_pdbe_chem_comp_rdkit_properties.tpsa 64.930
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.953
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.336
_pdbe_chem_comp_rdkit_properties.chi0v 9.842
_pdbe_chem_comp_rdkit_properties.chi1v 5.394
_pdbe_chem_comp_rdkit_properties.chi2v 2.484
_pdbe_chem_comp_rdkit_properties.chi3v 2.484
_pdbe_chem_comp_rdkit_properties.chi4v 1.588
_pdbe_chem_comp_rdkit_properties.chi0n 26.842
_pdbe_chem_comp_rdkit_properties.chi1n 13.683
_pdbe_chem_comp_rdkit_properties.chi2n 2.484
_pdbe_chem_comp_rdkit_properties.chi3n 2.484
_pdbe_chem_comp_rdkit_properties.chi4n 1.588
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.390
_pdbe_chem_comp_rdkit_properties.kappa1 3.625
_pdbe_chem_comp_rdkit_properties.kappa2 4.945
_pdbe_chem_comp_rdkit_properties.kappa3 2.235
_pdbe_chem_comp_rdkit_properties.Phi 0.896
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OSY UniChem ChEMBL CHEMBL4596884
OSY UniChem PDBe OSY
OSY UniChem PubChem 146025967
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OSY N28 6.448 -0.838 0.614 ETKDGv3 1
OSY C27 5.892 0.315 -0.086 ETKDGv3 2
OSY C24 4.392 0.216 -0.125 ETKDGv3 3
OSY C23 3.769 -0.390 -1.149 ETKDGv3 4
OSY C22 2.297 -0.514 -1.160 ETKDGv3 5
OSY C25 3.591 0.729 1.011 ETKDGv3 6
OSY C26 2.257 0.615 1.004 ETKDGv3 7
OSY C21 1.561 -0.034 -0.139 ETKDGv3 8
OSY C08 0.081 -0.153 -0.147 ETKDGv3 9
OSY C09 -0.682 0.875 0.272 ETKDGv3 10
OSY C07 -0.557 -1.415 -0.619 ETKDGv3 11
OSY C06 -1.886 -1.572 -0.651 ETKDGv3 12
OSY C05 -2.784 -0.479 -0.210 ETKDGv3 13
OSY C04 -4.134 -0.569 -0.219 ETKDGv3 14
OSY C11 -4.851 -1.807 -0.686 ETKDGv3 15
OSY C03 -4.933 0.591 0.249 ETKDGv3 16
OSY C02 -4.315 1.705 0.671 ETKDGv3 17
OSY N02 -5.071 2.828 1.124 ETKDGv3 18
OSY N01 -2.880 1.771 0.668 ETKDGv3 19
OSY C10 -2.149 0.773 0.265 ETKDGv3 20
OSY H1 7.481 -0.696 0.690 ETKDGv3 21
OSY H2 6.308 -1.683 0.014 ETKDGv3 22
OSY H4 6.310 0.374 -1.117 ETKDGv3 23
OSY H5 6.187 1.246 0.445 ETKDGv3 24
OSY H6 4.336 -0.796 -1.978 ETKDGv3 25
OSY H7 1.824 -0.979 -2.016 ETKDGv3 26
OSY H8 4.083 1.195 1.855 ETKDGv3 27
OSY H9 1.691 0.982 1.850 ETKDGv3 28
OSY H10 -0.227 1.802 0.600 ETKDGv3 29
OSY H11 0.068 -2.243 -0.931 ETKDGv3 30
OSY H12 -2.287 -2.515 -0.999 ETKDGv3 31
OSY H13 -4.591 -2.018 -1.745 ETKDGv3 32
OSY H14 -4.565 -2.672 -0.052 ETKDGv3 33
OSY H15 -5.953 -1.682 -0.622 ETKDGv3 34
OSY H16 -6.015 0.537 0.250 ETKDGv3 35
OSY H17 -6.116 2.809 1.137 ETKDGv3 36
OSY H18 -4.581 3.690 1.450 ETKDGv3 37
#