data_OTA
#
_chem_comp.id OTA
_chem_comp.name "2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H10 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-04-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 270.262
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OTA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1C88
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OTA N1 N1 N 0 1 N N N N N N 45.336 10.374 -0.275 -1.321 0.415 -4.351 N1 OTA 1
OTA C2 C2 C 0 1 N N N N N N 45.822 10.629 1.101 -2.084 -0.033 -3.174 C2 OTA 2
OTA C3 C3 C 0 1 Y N N N N N 45.322 11.995 1.528 -1.179 -0.017 -1.983 C3 OTA 3
OTA C4 C4 C 0 1 Y N N N N N 44.587 12.817 0.726 0.174 0.017 -2.010 C4 OTA 4
OTA C5 C5 C 0 1 N N N N N N 43.923 12.414 -0.560 0.896 0.035 -3.353 C5 OTA 5
OTA C6 C6 C 0 1 N N N N N N 43.932 10.899 -0.646 -0.107 -0.405 -4.424 C6 OTA 6
OTA S13 S13 S 0 1 Y N N N N N 45.801 12.762 3.077 -1.594 -0.031 -0.265 S13 OTA 7
OTA C14 C14 C 0 1 Y N N N N N 44.916 14.138 2.571 0.002 0.009 0.408 C14 OTA 8
OTA C15 C15 C 0 1 Y N N N N N 44.352 14.096 1.366 0.821 0.039 -0.715 C15 OTA 9
OTA C16 C16 C 0 1 N N N N N N 43.668 15.297 0.859 2.280 0.085 -0.593 C16 OTA 10
OTA O17 O17 O 0 1 N N N N N N 43.303 16.212 1.549 2.988 -1.060 -0.535 O17 OTA 11
OTA O18 O18 O 0 1 N N N N N N 43.489 15.218 -0.440 2.852 1.157 -0.543 O18 OTA 12
OTA N19 N19 N 0 1 N N N N N N 44.814 15.281 3.435 0.371 0.017 1.742 N19 OTA 13
OTA C20 C20 C 0 1 N N N N N N 45.436 15.448 4.613 -0.572 -0.009 2.703 C20 OTA 14
OTA C21 C21 C 0 1 N N N N N N 45.208 16.831 5.182 -0.173 -0.001 4.141 C21 OTA 15
OTA O22 O22 O 0 1 N N N N N N 46.019 17.423 5.811 -1.116 -0.028 5.101 O22 OTA 16
OTA O23 O23 O 0 1 N N N N N N 43.910 17.299 5.061 1.000 0.029 4.445 O23 OTA 17
OTA O24 O24 O 0 1 N N N N N N 46.047 14.565 5.264 -1.747 -0.040 2.399 O24 OTA 18
OTA H1 H1 H 0 1 N N N N N N 45.383 9.373 -0.469 -1.876 0.184 -5.162 H1 OTA 19
OTA H21 1H2 H 0 1 N N N N N N 45.536 9.822 1.815 -2.451 -1.046 -3.340 H21 OTA 20
OTA H22A 2H2 H 0 0 N N N N N N 46.928 10.526 1.193 -2.925 0.638 -3.004 H22A OTA 21
OTA H51 1H5 H 0 1 N N N N N N 42.900 12.844 -0.668 1.738 -0.656 -3.329 H51 OTA 22
OTA H52 2H5 H 0 1 N N N N N N 44.385 12.897 -1.452 1.250 1.043 -3.569 H52 OTA 23
OTA H61 1H6 H 0 1 N N N N N N 43.593 10.530 -1.642 -0.369 -1.451 -4.266 H61 OTA 24
OTA H62 2H6 H 0 1 N N N N N N 43.130 10.436 -0.024 0.344 -0.293 -5.410 H62 OTA 25
OTA H17 H17 H 0 1 N N N N N N 42.861 16.987 1.221 3.952 -1.029 -0.455 H17 OTA 26
OTA H19 H19 H 0 1 N N N N N N 44.225 16.074 3.179 1.310 0.042 1.984 H19 OTA 27
OTA H22 H22 H 0 1 N N N N N N 45.875 18.291 6.168 -0.858 -0.023 6.033 H22 OTA 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OTA N1 C2 SING N N 1
OTA N1 C6 SING N N 2
OTA N1 H1 SING N N 3
OTA C2 C3 SING N N 4
OTA C2 H21 SING N N 5
OTA C2 H22A SING N N 6
OTA C3 C4 DOUB Y N 7
OTA C3 S13 SING Y N 8
OTA C4 C5 SING N N 9
OTA C4 C15 SING Y N 10
OTA C5 C6 SING N N 11
OTA C5 H51 SING N N 12
OTA C5 H52 SING N N 13
OTA C6 H61 SING N N 14
OTA C6 H62 SING N N 15
OTA S13 C14 SING Y N 16
OTA C14 C15 DOUB Y N 17
OTA C14 N19 SING N N 18
OTA C15 C16 SING N N 19
OTA C16 O17 SING N N 20
OTA C16 O18 DOUB N N 21
OTA O17 H17 SING N N 22
OTA N19 C20 SING N N 23
OTA N19 H19 SING N N 24
OTA C20 C21 SING N N 25
OTA C20 O24 DOUB N N 26
OTA C21 O22 SING N N 27
OTA C21 O23 DOUB N N 28
OTA O22 H22 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OTA SMILES ACDLabs 10.04 O=C(O)C(=O)Nc1sc2c(c1C(=O)O)CCNC2
OTA SMILES_CANONICAL CACTVS 3.341 OC(=O)C(=O)Nc1sc2CNCCc2c1C(O)=O
OTA SMILES CACTVS 3.341 OC(=O)C(=O)Nc1sc2CNCCc2c1C(O)=O
OTA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1CNCc2c1c(c(s2)NC(=O)C(=O)O)C(=O)O
OTA SMILES "OpenEye OEToolkits" 1.5.0 C1CNCc2c1c(c(s2)NC(=O)C(=O)O)C(=O)O
OTA InChI InChI 1.03 InChI=1S/C10H10N2O5S/c13-7(10(16)17)12-8-6(9(14)15)4-1-2-11-3-5(4)18-8/h11H,1-3H2,(H,12,13)(H,14,15)(H,16,17)
OTA InChIKey InChI 1.03 ZIBMATWHOAGNTR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OTA "SYSTEMATIC NAME" ACDLabs 10.04 "2-[(carboxycarbonyl)amino]-4,5,6,7-tetrahydrothieno[2,3-c]pyridine-3-carboxylic acid"
OTA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-(carboxycarbonylamino)-4,5,6,7-tetrahydrothieno[5,4-c]pyridine-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OTA 'Create component' 2000-04-18 RCSB
OTA 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id OTA
_pdbe_chem_comp_drugbank_details.drugbank_id DB03670
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-Thieno[2,3-C]Pyridine-3-Carboxylic Acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id OTA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03670
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.'
#
_pdbe_chem_comp_drugbank_targets.comp_id OTA
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03670
_pdbe_chem_comp_drugbank_targets.name 'Tyrosine-protein phosphatase non-receptor type 1'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P18031
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OTA N1 N 3.805 -1.768 1
OTA C2 C 5.104 -2.518 2
OTA C3 C 6.404 -1.768 3
OTA C4 C 6.404 -0.268 4
OTA C5 C 5.104 0.482 5
OTA C6 C 3.805 -0.268 6
OTA S13 S 7.823 -2.225 7
OTA C14 C 8.698 -1.018 8
OTA C15 C 7.823 0.190 9
OTA C16 C 8.289 1.615 10
OTA O17 O 7.287 2.732 11
OTA O18 O 9.757 1.925 12
OTA N19 N 10.198 -1.018 13
OTA C20 C 10.948 -2.317 14
OTA C21 C 12.448 -2.317 15
OTA O22 O 13.198 -3.616 16
OTA O23 O 13.198 -1.018 17
OTA O24 O 10.198 -3.616 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OTA N1 C2 SINGLE NONE 1
OTA N1 C6 SINGLE NONE 2
OTA C2 C3 SINGLE NONE 3
OTA C3 C4 DOUBLE NONE 4
OTA C3 S13 SINGLE NONE 5
OTA C4 C5 SINGLE NONE 6
OTA C4 C15 SINGLE NONE 7
OTA C5 C6 SINGLE NONE 8
OTA S13 C14 SINGLE NONE 9
OTA C14 C15 DOUBLE NONE 10
OTA C14 N19 SINGLE NONE 11
OTA C15 C16 SINGLE NONE 12
OTA C16 O17 SINGLE NONE 13
OTA C16 O18 DOUBLE NONE 14
OTA N19 C20 SINGLE NONE 15
OTA C20 C21 SINGLE NONE 16
OTA C20 O24 DOUBLE NONE 17
OTA C21 O22 SINGLE NONE 18
OTA C21 O23 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OTA MurckoScaffold S1 scaffold c1cc2c(s1)CNCC2 InChI=1S/C7H9NS/c1-3-8-5-7-6(1)2-4-9-7/h2,4,8H,1,3,5H2 HXNOEHIMWZDRTK-UHFFFAOYSA-N
OTA amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
OTA peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
OTA thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
OTA Z56951191 F4 fragment CC(=O)Nc1cc(C)c(C)s1 InChI=1S/C8H11NOS/c1-5-4-8(9-7(3)10)11-6(5)2/h4H,1-3H3,(H,9,10) CPTWNJFKDSOTAR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OTA N1 S1 1
OTA C2 S1 1
OTA C3 S1 1
OTA C4 S1 1
OTA C5 S1 1
OTA C6 S1 1
OTA S13 S1 1
OTA C14 S1 1
OTA C15 S1 1
OTA N19 F1 1
OTA C20 F1 1
OTA O24 F1 1
OTA C21 F1 1
OTA O23 F2 1
OTA C21 F2 1
OTA C20 F2 1
OTA N19 F2 1
OTA C3 F3 1
OTA C4 F3 1
OTA C15 F3 1
OTA C14 F3 1
OTA S13 F3 1
OTA C21 F4 1
OTA C20 F4 1
OTA O24 F4 1
OTA N19 F4 1
OTA C14 F4 1
OTA C15 F4 1
OTA C4 F4 1
OTA C5 F4 1
OTA C3 F4 1
OTA C2 F4 1
OTA S13 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OTA
_pdbe_chem_comp_rdkit_properties.exactmw 270.031
_pdbe_chem_comp_rdkit_properties.amw 270.266
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 119.768
_pdbe_chem_comp_rdkit_properties.tpsa 115.730
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.430
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.332
_pdbe_chem_comp_rdkit_properties.chi0v 9.160
_pdbe_chem_comp_rdkit_properties.chi1v 5.140
_pdbe_chem_comp_rdkit_properties.chi2v 2.854
_pdbe_chem_comp_rdkit_properties.chi3v 2.854
_pdbe_chem_comp_rdkit_properties.chi4v 2.142
_pdbe_chem_comp_rdkit_properties.chi0n 18.344
_pdbe_chem_comp_rdkit_properties.chi1n 9.034
_pdbe_chem_comp_rdkit_properties.chi2n 1.866
_pdbe_chem_comp_rdkit_properties.chi3n 1.866
_pdbe_chem_comp_rdkit_properties.chi4n 1.186
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.930
_pdbe_chem_comp_rdkit_properties.kappa1 4.980
_pdbe_chem_comp_rdkit_properties.kappa2 4.747
_pdbe_chem_comp_rdkit_properties.kappa3 2.198
_pdbe_chem_comp_rdkit_properties.Phi 1.313
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OTA UniChem ChEMBL CHEMBL139393
OTA UniChem DrugBank DB03670
OTA UniChem PDBe OTA
OTA UniChem ZINC ZINC000001551920
OTA UniChem SureChEMBL SCHEMBL4293286
OTA UniChem 'PubChem TPHARMA' 14750507
OTA UniChem BindingDb 50118792
OTA UniChem BRENDA 117278
OTA UniChem BRENDA 232720
OTA UniChem 'Probes And Drugs' PD006716
OTA UniChem Nikkaji J1.292.447J
OTA UniChem PubChem 444766
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OTA N1 -3.793 -1.012 0.551 ETKDGv3 1
OTA C2 -2.617 -1.888 0.433 ETKDGv3 2
OTA C3 -1.354 -1.079 0.414 ETKDGv3 3
OTA C4 -1.306 0.206 0.058 ETKDGv3 4
OTA C5 -2.566 0.982 -0.235 ETKDGv3 5
OTA C6 -3.758 0.041 -0.475 ETKDGv3 6
OTA S13 0.280 -1.718 0.668 ETKDGv3 7
OTA C14 1.024 -0.133 0.316 ETKDGv3 8
OTA C15 0.075 0.777 0.032 ETKDGv3 9
OTA C16 0.360 2.189 -0.305 ETKDGv3 10
OTA O17 1.562 2.541 -0.913 ETKDGv3 11
OTA O18 -0.493 3.084 -0.062 ETKDGv3 12
OTA N19 2.421 0.157 0.489 ETKDGv3 13
OTA C20 3.450 -0.835 0.348 ETKDGv3 14
OTA C21 4.835 -0.540 0.743 ETKDGv3 15
OTA O22 5.823 -1.505 0.576 ETKDGv3 16
OTA O23 5.134 0.581 1.234 ETKDGv3 17
OTA O24 3.182 -1.966 -0.141 ETKDGv3 18
OTA H1 -4.645 -1.597 0.384 ETKDGv3 19
OTA H21 -2.590 -2.580 1.300 ETKDGv3 20
OTA H22A -2.676 -2.493 -0.499 ETKDGv3 21
OTA H51 -2.787 1.640 0.632 ETKDGv3 22
OTA H52 -2.420 1.614 -1.137 ETKDGv3 23
OTA H61 -3.688 -0.410 -1.491 ETKDGv3 24
OTA H62 -4.699 0.632 -0.430 ETKDGv3 25
OTA H17 1.762 3.505 -1.152 ETKDGv3 26
OTA H19 2.700 1.124 0.766 ETKDGv3 27
OTA H22 6.783 -1.319 0.843 ETKDGv3 28
#