data_OVJ
#
_chem_comp.id OVJ
_chem_comp.name "{6-[(4-methoxyphenyl)amino]-1-benzofuran-3-yl}acetic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H15 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-09
_chem_comp.pdbx_modified_date 2019-11-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 297.305
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OVJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6POQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OVJ C12 C1 C 0 1 Y N N N N N 18.965 -11.700 3.227 -2.686 -0.793 0.387 C12 OVJ 1
OVJ C13 C2 C 0 1 Y N N N N N 19.948 -11.478 4.202 -2.626 0.033 -0.728 C13 OVJ 2
OVJ C15 C3 C 0 1 Y N N N N N 19.126 -13.279 5.570 -4.896 0.705 -0.346 C15 OVJ 3
OVJ C20 C4 C 0 1 Y N N N N N 18.998 -8.838 0.675 -0.005 0.225 0.299 C20 OVJ 4
OVJ C21 C5 C 0 1 Y N N N N N 19.674 -7.717 0.204 1.247 0.648 -0.051 C21 OVJ 5
OVJ C22 C6 C 0 1 Y N N N N N 20.978 -7.483 0.589 2.245 -0.288 -0.317 C22 OVJ 6
OVJ C02 C7 C 0 1 N N N N N N 21.628 -3.958 0.283 4.994 1.564 0.375 C02 OVJ 7
OVJ C04 C8 C 0 1 N N N N N N 22.010 -5.264 -0.483 4.453 1.064 -0.939 C04 OVJ 8
OVJ C05 C9 C 0 1 Y N N N N N 22.012 -6.485 0.340 3.658 -0.196 -0.708 C05 OVJ 9
OVJ C06 C10 C 0 1 Y N N N N N 23.082 -6.908 1.083 4.098 -1.456 -0.817 C06 OVJ 10
OVJ C08 C11 C 0 1 Y N N N N N 21.549 -8.438 1.479 1.970 -1.663 -0.228 C08 OVJ 11
OVJ C09 C12 C 0 1 Y N N N N N 20.905 -9.559 1.957 0.694 -2.078 0.128 C09 OVJ 12
OVJ C10 C13 C 0 1 Y N N N N N 19.589 -9.778 1.567 -0.288 -1.136 0.390 C10 OVJ 13
OVJ C14 C14 C 0 1 Y N N N N N 20.028 -12.246 5.356 -3.729 0.780 -1.093 C14 OVJ 14
OVJ C17 C15 C 0 1 N N N N N N 18.747 -13.320 7.824 -7.149 1.316 0.108 C17 OVJ 15
OVJ C18 C16 C 0 1 Y N N N N N 18.139 -13.530 4.635 -4.956 -0.120 0.767 C18 OVJ 16
OVJ C19 C17 C 0 1 Y N N N N N 18.068 -12.748 3.486 -3.854 -0.867 1.134 C19 OVJ 17
OVJ N11 N1 N 0 1 N N N N N N 18.848 -10.933 2.029 -1.571 -1.555 0.754 N11 OVJ 18
OVJ O01 O1 O 0 1 N N N N N N 20.448 -3.862 0.674 5.738 2.681 0.413 O01 OVJ 19
OVJ O03 O2 O 0 1 N N N N N N 22.539 -3.113 0.448 4.759 0.960 1.395 O03 OVJ 20
OVJ O07 O3 O 0 1 Y N N N N N 22.829 -8.090 1.784 3.106 -2.320 -0.535 O07 OVJ 21
OVJ O16 O4 O 0 1 N N N N N N 19.191 -14.030 6.697 -5.981 1.441 -0.706 O16 OVJ 22
OVJ H1 H1 H 0 1 N N N N N N 20.665 -10.685 4.051 -1.718 0.092 -1.309 H1 OVJ 23
OVJ H2 H2 H 0 1 N N N N N N 17.981 -9.003 0.350 -0.777 0.950 0.509 H2 OVJ 24
OVJ H3 H3 H 0 1 N N N N N N 19.177 -7.029 -0.464 1.462 1.704 -0.121 H3 OVJ 25
OVJ H4 H4 H 0 1 N N N N N N 21.288 -5.404 -1.301 3.808 1.824 -1.380 H4 OVJ 26
OVJ H5 H5 H 0 1 N N N N N N 23.018 -5.132 -0.902 5.280 0.852 -1.616 H5 OVJ 27
OVJ H6 H6 H 0 1 N N N N N N 24.024 -6.382 1.123 5.104 -1.738 -1.092 H6 OVJ 28
OVJ H7 H7 H 0 1 N N N N N N 21.410 -10.249 2.617 0.468 -3.132 0.201 H7 OVJ 29
OVJ H8 H8 H 0 1 N N N N N N 20.794 -12.039 6.089 -3.683 1.423 -1.959 H8 OVJ 30
OVJ H9 H9 H 0 1 N N N N N N 18.816 -13.963 8.714 -7.938 1.954 -0.289 H9 OVJ 31
OVJ H10 H10 H 0 1 N N N N N N 19.375 -12.429 7.967 -7.484 0.279 0.104 H10 OVJ 32
OVJ H11 H11 H 0 1 N N N N N N 17.702 -13.012 7.675 -6.915 1.619 1.128 H11 OVJ 33
OVJ H12 H12 H 0 1 N N N N N N 17.428 -14.327 4.795 -5.865 -0.177 1.348 H12 OVJ 34
OVJ H13 H13 H 0 1 N N N N N N 17.292 -12.956 2.765 -3.902 -1.510 2.000 H13 OVJ 35
OVJ H14 H14 H 0 1 N N N N N N 18.134 -11.246 1.403 -1.688 -2.373 1.261 H14 OVJ 36
OVJ H15 H15 H 0 1 N N N N N N 20.331 -3.036 1.128 6.063 2.962 1.279 H15 OVJ 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OVJ C04 C02 SING N N 1
OVJ C04 C05 SING N N 2
OVJ C21 C22 DOUB Y N 3
OVJ C21 C20 SING Y N 4
OVJ C02 O03 DOUB N N 5
OVJ C02 O01 SING N N 6
OVJ C05 C22 SING Y N 7
OVJ C05 C06 DOUB Y N 8
OVJ C22 C08 SING Y N 9
OVJ C20 C10 DOUB Y N 10
OVJ C06 O07 SING Y N 11
OVJ C08 O07 SING Y N 12
OVJ C08 C09 DOUB Y N 13
OVJ C10 C09 SING Y N 14
OVJ C10 N11 SING N N 15
OVJ N11 C12 SING N N 16
OVJ C12 C19 DOUB Y N 17
OVJ C12 C13 SING Y N 18
OVJ C19 C18 SING Y N 19
OVJ C13 C14 DOUB Y N 20
OVJ C18 C15 DOUB Y N 21
OVJ C14 C15 SING Y N 22
OVJ C15 O16 SING N N 23
OVJ O16 C17 SING N N 24
OVJ C13 H1 SING N N 25
OVJ C20 H2 SING N N 26
OVJ C21 H3 SING N N 27
OVJ C04 H4 SING N N 28
OVJ C04 H5 SING N N 29
OVJ C06 H6 SING N N 30
OVJ C09 H7 SING N N 31
OVJ C14 H8 SING N N 32
OVJ C17 H9 SING N N 33
OVJ C17 H10 SING N N 34
OVJ C17 H11 SING N N 35
OVJ C18 H12 SING N N 36
OVJ C19 H13 SING N N 37
OVJ N11 H14 SING N N 38
OVJ O01 H15 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OVJ SMILES ACDLabs 12.01 c1(ccc(OC)cc1)Nc3ccc2c(occ2CC(=O)O)c3
OVJ InChI InChI 1.03 InChI=1S/C17H15NO4/c1-21-14-5-2-12(3-6-14)18-13-4-7-15-11(8-17(19)20)10-22-16(15)9-13/h2-7,9-10,18H,8H2,1H3,(H,19,20)
OVJ InChIKey InChI 1.03 MFCXHNGDMBSNNX-UHFFFAOYSA-N
OVJ SMILES_CANONICAL CACTVS 3.385 COc1ccc(Nc2ccc3c(CC(O)=O)coc3c2)cc1
OVJ SMILES CACTVS 3.385 COc1ccc(Nc2ccc3c(CC(O)=O)coc3c2)cc1
OVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)Nc2ccc3c(c2)occ3CC(=O)O
OVJ SMILES "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)Nc2ccc3c(c2)occ3CC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OVJ "SYSTEMATIC NAME" ACDLabs 12.01 "{6-[(4-methoxyphenyl)amino]-1-benzofuran-3-yl}acetic acid"
OVJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[6-[(4-methoxyphenyl)amino]-1-benzofuran-3-yl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OVJ 'Create component' 2019-07-09 RCSB
OVJ 'Initial release' 2019-11-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OVJ C12 C 8.196 -1.815 1
OVJ C13 C 6.897 -2.565 2
OVJ C15 C 5.598 -0.315 3
OVJ C20 C 10.794 -0.315 4
OVJ C21 C 12.093 0.435 5
OVJ C22 C 13.392 -0.315 6
OVJ C02 C 16.745 1.877 7
OVJ C04 C 15.278 1.568 8
OVJ C05 C 14.812 0.142 9
OVJ C06 C 15.687 -1.065 10
OVJ C08 C 13.392 -1.815 11
OVJ C09 C 12.093 -2.565 12
OVJ C10 C 10.794 -1.815 13
OVJ C14 C 5.598 -1.815 14
OVJ C17 C 3.000 -0.315 15
OVJ C18 C 6.897 0.435 16
OVJ C19 C 8.196 -0.315 17
OVJ N11 N 9.495 -2.565 18
OVJ O01 O 17.747 0.761 19
OVJ O03 O 17.211 3.303 20
OVJ O07 O 14.812 -2.272 21
OVJ O16 O 4.299 0.435 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OVJ C04 C02 SINGLE NONE 1
OVJ C04 C05 SINGLE NONE 2
OVJ C21 C22 SINGLE NONE 3
OVJ C21 C20 DOUBLE NONE 4
OVJ C02 O03 DOUBLE NONE 5
OVJ C02 O01 SINGLE NONE 6
OVJ C05 C22 SINGLE NONE 7
OVJ C05 C06 DOUBLE NONE 8
OVJ C22 C08 DOUBLE NONE 9
OVJ C20 C10 SINGLE NONE 10
OVJ C06 O07 SINGLE NONE 11
OVJ C08 O07 SINGLE NONE 12
OVJ C08 C09 SINGLE NONE 13
OVJ C10 C09 DOUBLE NONE 14
OVJ C10 N11 SINGLE NONE 15
OVJ N11 C12 SINGLE NONE 16
OVJ C12 C19 SINGLE NONE 17
OVJ C12 C13 DOUBLE NONE 18
OVJ C19 C18 DOUBLE NONE 19
OVJ C13 C14 SINGLE NONE 20
OVJ C18 C15 SINGLE NONE 21
OVJ C14 C15 DOUBLE NONE 22
OVJ C15 O16 SINGLE NONE 23
OVJ O16 C17 SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OVJ MurckoScaffold S1 scaffold c1ccc(Nc2ccc3ccoc3c2)cc1 InChI=1S/C14H11NO/c1-2-4-12(5-3-1)15-13-7-6-11-8-9-16-14(11)10-13/h1-10,15H RMIZQIVKZTXSLA-UHFFFAOYSA-N
OVJ furan F1 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
OVJ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OVJ C12 S1 1
OVJ C13 S1 1
OVJ C15 S1 1
OVJ C20 S1 1
OVJ C21 S1 1
OVJ C22 S1 1
OVJ C05 S1 1
OVJ C06 S1 1
OVJ C08 S1 1
OVJ C09 S1 1
OVJ C10 S1 1
OVJ C14 S1 1
OVJ C18 S1 1
OVJ C19 S1 1
OVJ N11 S1 1
OVJ O07 S1 1
OVJ C06 F1 1
OVJ C05 F1 1
OVJ C22 F1 1
OVJ C08 F1 1
OVJ O07 F1 1
OVJ C12 F2 1
OVJ C19 F2 1
OVJ C18 F2 1
OVJ C15 F2 1
OVJ C14 F2 1
OVJ C13 F2 1
OVJ C20 F2 2
OVJ C21 F2 2
OVJ C22 F2 2
OVJ C08 F2 2
OVJ C09 F2 2
OVJ C10 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id OVJ
_pdbe_chem_comp_rdkit_properties.exactmw 297.100
_pdbe_chem_comp_rdkit_properties.amw 297.310
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.118
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 147.898
_pdbe_chem_comp_rdkit_properties.tpsa 71.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.105
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.101
_pdbe_chem_comp_rdkit_properties.chi0v 10.580
_pdbe_chem_comp_rdkit_properties.chi1v 5.672
_pdbe_chem_comp_rdkit_properties.chi2v 2.412
_pdbe_chem_comp_rdkit_properties.chi3v 2.412
_pdbe_chem_comp_rdkit_properties.chi4v 1.545
_pdbe_chem_comp_rdkit_properties.chi0n 25.580
_pdbe_chem_comp_rdkit_properties.chi1n 13.027
_pdbe_chem_comp_rdkit_properties.chi2n 2.412
_pdbe_chem_comp_rdkit_properties.chi3n 2.412
_pdbe_chem_comp_rdkit_properties.chi4n 1.545
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.950
_pdbe_chem_comp_rdkit_properties.kappa1 4.776
_pdbe_chem_comp_rdkit_properties.kappa2 5.811
_pdbe_chem_comp_rdkit_properties.kappa3 2.880
_pdbe_chem_comp_rdkit_properties.Phi 1.261
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OVJ UniChem PDBe OVJ
OVJ UniChem PubChem 139592524
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OVJ C12 2.276 0.064 -0.746 ETKDGv3 1
OVJ C13 2.373 -0.840 0.246 ETKDGv3 2
OVJ C15 4.692 -0.213 0.721 ETKDGv3 3
OVJ C20 -1.309 -0.496 -1.997 ETKDGv3 4
OVJ C21 -2.578 -0.674 -1.587 ETKDGv3 5
OVJ C22 -2.900 -0.379 -0.183 ETKDGv3 6
OVJ C02 -6.137 0.366 -0.624 ETKDGv3 7
OVJ C04 -5.500 -0.826 0.012 ETKDGv3 8
OVJ C05 -4.154 -0.459 0.554 ETKDGv3 9
OVJ C06 -3.888 -0.038 1.791 ETKDGv3 10
OVJ C08 -1.986 0.060 0.656 ETKDGv3 11
OVJ C09 -0.592 0.266 0.234 ETKDGv3 12
OVJ C10 -0.255 -0.021 -1.045 ETKDGv3 13
OVJ C14 3.628 -0.973 1.015 ETKDGv3 14
OVJ C17 7.054 0.374 1.260 ETKDGv3 15
OVJ C18 4.596 0.766 -0.395 ETKDGv3 16
OVJ C19 3.457 0.890 -1.087 ETKDGv3 17
OVJ N11 1.080 0.192 -1.535 ETKDGv3 18
OVJ O01 -6.875 1.254 0.152 ETKDGv3 19
OVJ O03 -5.972 0.590 -1.854 ETKDGv3 20
OVJ O07 -2.536 0.289 1.908 ETKDGv3 21
OVJ O16 5.861 -0.372 1.476 ETKDGv3 22
OVJ H1 1.546 -1.496 0.484 ETKDGv3 23
OVJ H2 -1.048 -0.704 -3.027 ETKDGv3 24
OVJ H3 -3.340 -1.020 -2.273 ETKDGv3 25
OVJ H4 -5.390 -1.641 -0.735 ETKDGv3 26
OVJ H5 -6.150 -1.201 0.831 ETKDGv3 27
OVJ H6 -4.611 0.052 2.592 ETKDGv3 28
OVJ H7 0.129 0.661 0.938 ETKDGv3 29
OVJ H8 3.681 -1.695 1.820 ETKDGv3 30
OVJ H9 7.821 0.053 1.994 ETKDGv3 31
OVJ H10 6.857 1.458 1.402 ETKDGv3 32
OVJ H11 7.440 0.187 0.236 ETKDGv3 33
OVJ H12 5.442 1.386 -0.661 ETKDGv3 34
OVJ H13 3.398 1.605 -1.899 ETKDGv3 35
OVJ H14 1.189 0.462 -2.538 ETKDGv3 36
OVJ H15 -7.299 2.076 -0.261 ETKDGv3 37
#