data_OWA
#
_chem_comp.id OWA
_chem_comp.name "methyl [(3R)-1-methyl-5-oxopyrrolidin-3-yl]acetate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H13 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-11
_chem_comp.pdbx_modified_date 2019-11-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 171.194
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OWA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PRT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OWA C02 C1 C 0 1 N N N N N N -14.331 4.781 0.057 -2.167 0.816 -0.158 C02 OWA 1
OWA C04 C2 C 0 1 N N N N N N -12.866 3.273 1.446 -3.966 -0.874 0.129 C04 OWA 2
OWA C05 C3 C 0 1 N N N N N N -12.233 5.689 0.641 -1.420 -1.367 0.104 C05 OWA 3
OWA C06 C4 C 0 1 N N R N N N -12.823 6.601 -0.489 -0.195 -0.467 0.381 C06 OWA 4
OWA C07 C5 C 0 1 N N N N N N -12.027 6.453 -1.831 1.044 -0.990 -0.349 C07 OWA 5
OWA C08 C6 C 0 1 N N N N N N -10.709 7.157 -1.833 2.242 -0.162 0.041 C08 OWA 6
OWA C10 C7 C 0 1 N N N N N N -8.337 7.189 -0.997 4.557 0.398 -0.059 C10 OWA 7
OWA C12 C8 C 0 1 N N N N N N -14.257 6.169 -0.506 -0.657 0.885 -0.211 C12 OWA 8
OWA N03 N1 N 0 1 N N N N N N -13.129 4.508 0.734 -2.566 -0.454 0.024 N03 OWA 9
OWA O01 O1 O 0 1 N N N N N N -15.266 4.016 -0.006 -2.910 1.770 -0.259 O01 OWA 10
OWA O09 O2 O 0 1 N N N N N N -9.645 6.452 -1.281 3.448 -0.441 -0.479 O09 OWA 11
OWA O11 O3 O 0 1 N N N N N N -10.499 8.260 -2.258 2.118 0.751 0.822 O11 OWA 12
OWA H042 H1 H 0 0 N N N N N N -11.858 3.310 1.886 -4.615 -0.003 0.038 H042 OWA 13
OWA H041 H2 H 0 0 N N N N N N -13.611 3.145 2.246 -4.194 -1.582 -0.668 H041 OWA 14
OWA H043 H3 H 0 0 N N N N N N -12.930 2.426 0.747 -4.131 -1.350 1.096 H043 OWA 15
OWA H051 H4 H 0 0 N N N N N N -11.212 5.373 0.381 -1.293 -1.896 -0.841 H051 OWA 16
OWA H052 H5 H 0 0 N N N N N N -12.217 6.231 1.598 -1.559 -2.078 0.918 H052 OWA 17
OWA H061 H6 H 0 0 N N N N N N -12.761 7.649 -0.160 -0.008 -0.381 1.451 H061 OWA 18
OWA H072 H7 H 0 0 N N N N N N -12.641 6.865 -2.645 1.217 -2.030 -0.073 H072 OWA 19
OWA H071 H8 H 0 0 N N N N N N -11.848 5.383 -2.012 0.889 -0.920 -1.425 H071 OWA 20
OWA H102 H9 H 0 0 N N N N N N -7.607 6.488 -0.565 4.352 1.433 -0.331 H102 OWA 21
OWA H103 H10 H 0 0 N N N N N N -7.938 7.602 -1.935 4.680 0.323 1.021 H103 OWA 22
OWA H101 H11 H 0 0 N N N N N N -8.524 8.008 -0.286 5.470 0.066 -0.553 H101 OWA 23
OWA H121 H12 H 0 0 N N N N N N -14.860 6.853 0.109 -0.316 0.987 -1.241 H121 OWA 24
OWA H122 H13 H 0 0 N N N N N N -14.636 6.173 -1.539 -0.291 1.712 0.397 H122 OWA 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OWA O11 C08 DOUB N N 1
OWA C08 C07 SING N N 2
OWA C08 O09 SING N N 3
OWA C07 C06 SING N N 4
OWA O09 C10 SING N N 5
OWA C12 C06 SING N N 6
OWA C12 C02 SING N N 7
OWA C06 C05 SING N N 8
OWA O01 C02 DOUB N N 9
OWA C02 N03 SING N N 10
OWA C05 N03 SING N N 11
OWA N03 C04 SING N N 12
OWA C04 H042 SING N N 13
OWA C04 H041 SING N N 14
OWA C04 H043 SING N N 15
OWA C05 H051 SING N N 16
OWA C05 H052 SING N N 17
OWA C06 H061 SING N N 18
OWA C07 H072 SING N N 19
OWA C07 H071 SING N N 20
OWA C10 H102 SING N N 21
OWA C10 H103 SING N N 22
OWA C10 H101 SING N N 23
OWA C12 H121 SING N N 24
OWA C12 H122 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OWA SMILES ACDLabs 12.01 C1(N(C)CC(CC(OC)=O)C1)=O
OWA InChI InChI 1.03 InChI=1S/C8H13NO3/c1-9-5-6(3-7(9)10)4-8(11)12-2/h6H,3-5H2,1-2H3/t6-/m1/s1
OWA InChIKey InChI 1.03 CYBLSPQZUAXOJS-ZCFIWIBFSA-N
OWA SMILES_CANONICAL CACTVS 3.385 COC(=O)C[C@@H]1CN(C)C(=O)C1
OWA SMILES CACTVS 3.385 COC(=O)C[CH]1CN(C)C(=O)C1
OWA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN1C[C@H](CC1=O)CC(=O)OC
OWA SMILES "OpenEye OEToolkits" 2.0.7 CN1CC(CC1=O)CC(=O)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OWA "SYSTEMATIC NAME" ACDLabs 12.01 "methyl [(3R)-1-methyl-5-oxopyrrolidin-3-yl]acetate"
OWA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl 2-[(3~{R})-1-methyl-5-oxidanylidene-pyrrolidin-3-yl]ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OWA 'Create component' 2019-07-11 RCSB
OWA 'Initial release' 2019-11-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OWA C02 C 4.903 -2.988 1
OWA C04 C 7.543 -2.570 2
OWA C05 C 5.653 -0.680 3
OWA C06 C 4.153 -0.680 4
OWA C07 C 3.272 0.534 5
OWA C08 C 3.882 1.904 6
OWA C10 C 3.610 4.488 7
OWA C12 C 3.690 -2.106 8
OWA N03 N 6.117 -2.106 9
OWA O01 O 4.903 -4.488 10
OWA O09 O 3.000 3.118 11
OWA O11 O 5.373 2.061 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OWA O11 C08 DOUBLE NONE 1
OWA C08 C07 SINGLE NONE 2
OWA C08 O09 SINGLE NONE 3
OWA C06 C07 SINGLE BEGINDASH 4
OWA O09 C10 SINGLE NONE 5
OWA C12 C06 SINGLE NONE 6
OWA C12 C02 SINGLE NONE 7
OWA C06 C05 SINGLE NONE 8
OWA O01 C02 DOUBLE NONE 9
OWA C02 N03 SINGLE NONE 10
OWA C05 N03 SINGLE NONE 11
OWA N03 C04 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OWA MurckoScaffold S1 scaffold O=C1CCCN1 InChI=1S/C4H7NO/c6-4-2-1-3-5-4/h1-3H2,(H,5,6) HNJBEVLQSNELDL-UHFFFAOYSA-N
OWA amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OWA C02 S1 1
OWA C05 S1 1
OWA C06 S1 1
OWA C12 S1 1
OWA N03 S1 1
OWA O01 S1 1
OWA N03 F1 1
OWA C02 F1 1
OWA O01 F1 1
OWA C12 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OWA
_pdbe_chem_comp_rdkit_properties.exactmw 171.090
_pdbe_chem_comp_rdkit_properties.amw 171.196
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.749
_pdbe_chem_comp_rdkit_properties.tpsa 46.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.028
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.377
_pdbe_chem_comp_rdkit_properties.chi0v 5.672
_pdbe_chem_comp_rdkit_properties.chi1v 2.737
_pdbe_chem_comp_rdkit_properties.chi2v 0.978
_pdbe_chem_comp_rdkit_properties.chi3v 0.978
_pdbe_chem_comp_rdkit_properties.chi4v 0.540
_pdbe_chem_comp_rdkit_properties.chi0n 18.672
_pdbe_chem_comp_rdkit_properties.chi1n 9.237
_pdbe_chem_comp_rdkit_properties.chi2n 0.978
_pdbe_chem_comp_rdkit_properties.chi3n 0.978
_pdbe_chem_comp_rdkit_properties.chi4n 0.540
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 1.886
_pdbe_chem_comp_rdkit_properties.kappa2 3.559
_pdbe_chem_comp_rdkit_properties.kappa3 1.964
_pdbe_chem_comp_rdkit_properties.Phi 0.559
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OWA UniChem PDBe OWA
OWA UniChem ZINC ZINC000217776345
OWA UniChem PubChem 99991453
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OWA C02 -1.978 -0.082 -1.182 ETKDGv3 1
OWA C04 -3.896 -0.160 0.490 ETKDGv3 2
OWA C05 -1.397 0.064 1.084 ETKDGv3 3
OWA C06 -0.122 0.295 0.236 ETKDGv3 4
OWA C07 1.068 -0.538 0.746 ETKDGv3 5
OWA C08 2.324 -0.198 0.005 ETKDGv3 6
OWA C10 4.192 1.381 -0.361 ETKDGv3 7
OWA C12 -0.503 -0.027 -1.228 ETKDGv3 8
OWA N03 -2.490 -0.016 0.133 ETKDGv3 9
OWA O01 -2.709 -0.203 -2.201 ETKDGv3 10
OWA O09 3.009 0.979 0.319 ETKDGv3 11
OWA O11 2.735 -0.956 -0.916 ETKDGv3 12
OWA H042 -4.479 0.675 0.048 ETKDGv3 13
OWA H041 -4.284 -1.125 0.103 ETKDGv3 14
OWA H043 -4.019 -0.139 1.593 ETKDGv3 15
OWA H051 -1.344 -0.888 1.656 ETKDGv3 16
OWA H052 -1.562 0.909 1.788 ETKDGv3 17
OWA H061 0.139 1.376 0.302 ETKDGv3 18
OWA H072 1.229 -0.326 1.824 ETKDGv3 19
OWA H071 0.849 -1.624 0.644 ETKDGv3 20
OWA H102 4.549 2.341 0.065 ETKDGv3 21
OWA H103 4.984 0.614 -0.232 ETKDGv3 22
OWA H101 3.979 1.524 -1.441 ETKDGv3 23
OWA H121 -0.159 0.772 -1.919 ETKDGv3 24
OWA H122 -0.114 -1.015 -1.556 ETKDGv3 25
#