data_P6G
#
_chem_comp.id P6G
_chem_comp.name "HEXAETHYLENE GLYCOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H26 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "POLYETHYLENE GLYCOL PEG400"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-11-29
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces P2K
_chem_comp.formula_weight 282.331
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P6G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1G8I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P6G O1 O1 O 0 1 N N N N N N 11.099 -4.313 10.275 7.862 -0.247 -0.492 O1 P6G 1
P6G C2 C2 C 0 1 N N N N N N 10.486 -5.581 10.511 7.064 -1.301 0.052 C2 P6G 2
P6G C3 C3 C 0 1 N N N N N N 10.924 -6.718 11.290 6.147 -0.738 1.139 C3 P6G 3
P6G O4 O4 O 0 1 N N N N N N 12.442 -6.730 11.638 5.219 0.177 0.553 O4 P6G 4
P6G C5 C5 C 0 1 N N N N N N 12.747 -7.417 12.871 4.311 0.763 1.489 C5 P6G 5
P6G C6 C6 C 0 1 N N N N N N 14.027 -6.949 13.300 3.369 1.719 0.754 C6 P6G 6
P6G O7 O7 O 0 1 N N N N N N 15.178 -7.051 12.297 2.550 0.978 -0.152 O7 P6G 7
P6G C8 C8 C 0 1 N N N N N N 16.441 -7.400 12.916 1.629 1.780 -0.893 C8 P6G 8
P6G C9 C9 C 0 1 N N N N N N 17.527 -7.488 11.911 0.809 0.887 -1.826 C9 P6G 9
P6G O10 O10 O 0 1 N N N N N N 17.793 -8.945 11.282 0.000 0.002 -1.049 O10 P6G 10
P6G C11 C11 C 0 1 N N N N N N 18.982 -9.663 11.698 -0.809 -0.881 -1.829 C11 P6G 11
P6G C12 C12 C 0 1 N N N N N N 19.069 -10.949 11.028 -1.629 -1.778 -0.899 C12 P6G 12
P6G O13 O13 O 0 1 N N N N N N 18.687 -12.224 11.883 -2.550 -0.977 -0.155 O13 P6G 13
P6G C14 C14 C 0 1 N N N N N N 19.686 -13.241 12.046 -3.369 -1.721 0.749 C14 P6G 14
P6G C15 C15 C 0 1 N N N N N N 19.241 -14.350 12.859 -4.311 -0.768 1.486 C15 P6G 15
P6G O16 O16 O 0 1 N N N N N N 17.778 -14.267 13.420 -5.219 -0.178 0.553 O16 P6G 16
P6G C17 C17 C 0 1 N N N N N N 17.545 -14.792 14.736 -6.147 0.734 1.142 C17 P6G 17
P6G C18 C18 C 0 1 N N N N N N 16.139 -15.097 14.864 -7.064 1.301 0.056 C18 P6G 18
P6G O19 O19 O 0 1 N N N N N N 15.420 -14.273 16.017 -7.862 0.249 -0.491 O19 P6G 19
P6G H1 H1 H 0 1 N N N N N N 10.540 -3.791 9.712 8.469 -0.533 -1.189 H1 P6G 20
P6G H21 H21 H 0 1 N N N N N N 9.536 -5.307 10.993 6.459 -1.744 -0.740 H21 P6G 21
P6G H22 H22 H 0 1 N N N N N N 10.394 -6.000 9.498 7.713 -2.063 0.482 H22 P6G 22
P6G H31 H31 H 0 1 N N N N N N 10.364 -6.710 12.237 5.603 -1.554 1.615 H31 P6G 23
P6G H32 H32 H 0 1 N N N N N N 10.707 -7.626 10.707 6.747 -0.217 1.886 H32 P6G 24
P6G H51 H51 H 0 1 N N N N N N 11.984 -7.195 13.632 3.729 -0.022 1.971 H51 P6G 25
P6G H52 H52 H 0 1 N N N N N N 12.772 -8.504 12.707 4.873 1.314 2.243 H52 P6G 26
P6G H61 H61 H 0 1 N N N N N N 13.913 -5.884 13.551 2.736 2.233 1.478 H61 P6G 27
P6G H62 H62 H 0 1 N N N N N N 14.311 -7.548 14.178 3.954 2.451 0.199 H62 P6G 28
P6G H81 H81 H 0 1 N N N N N N 16.701 -6.627 13.654 0.960 2.295 -0.203 H81 P6G 29
P6G H82 H82 H 0 1 N N N N N N 16.336 -8.376 13.413 2.178 2.514 -1.482 H82 P6G 30
P6G H91 H91 H 0 1 N N N N N N 17.261 -6.817 11.081 0.170 1.507 -2.454 H91 P6G 31
P6G H92 H92 H 0 1 N N N N N N 18.457 -7.170 12.405 1.482 0.305 -2.456 H92 P6G 32
P6G H111 H111 H 0 0 N N N N N N 19.870 -9.065 11.443 -1.482 -0.297 -2.457 H111 P6G 33
P6G H112 H112 H 0 0 N N N N N N 18.940 -9.827 12.785 -0.170 -1.499 -2.459 H112 P6G 34
P6G H121 H121 H 0 0 N N N N N N 18.380 -10.915 10.171 -2.178 -2.510 -1.490 H121 P6G 35
P6G H122 H122 H 0 0 N N N N N N 20.113 -11.076 10.706 -0.960 -2.295 -0.211 H122 P6G 36
P6G H141 H141 H 0 0 N N N N N N 19.950 -13.628 11.051 -3.954 -2.452 0.191 H141 P6G 37
P6G H142 H142 H 0 0 N N N N N N 20.563 -12.788 12.531 -2.736 -2.237 1.471 H142 P6G 38
P6G H151 H151 H 0 0 N N N N N N 19.298 -15.254 12.235 -4.873 -1.322 2.238 H151 P6G 39
P6G H152 H152 H 0 0 N N N N N N 19.918 -14.410 13.724 -3.729 0.016 1.971 H152 P6G 40
P6G H171 H171 H 0 0 N N N N N N 18.140 -15.706 14.884 -6.747 0.211 1.887 H171 P6G 41
P6G H172 H172 H 0 0 N N N N N N 17.835 -14.047 15.491 -5.603 1.548 1.620 H172 P6G 42
P6G H181 H181 H 0 0 N N N N N N 15.647 -14.856 13.910 -7.713 2.062 0.489 H181 P6G 43
P6G H182 H182 H 0 0 N N N N N N 16.039 -16.168 15.093 -6.459 1.746 -0.734 H182 P6G 44
P6G H19 H19 H 0 1 N N N N N N 14.502 -14.514 16.054 -8.469 0.536 -1.187 H19 P6G 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P6G O1 C2 SING N N 1
P6G O1 H1 SING N N 2
P6G C2 C3 SING N N 3
P6G C2 H21 SING N N 4
P6G C2 H22 SING N N 5
P6G C3 O4 SING N N 6
P6G C3 H31 SING N N 7
P6G C3 H32 SING N N 8
P6G O4 C5 SING N N 9
P6G C5 C6 SING N N 10
P6G C5 H51 SING N N 11
P6G C5 H52 SING N N 12
P6G C6 O7 SING N N 13
P6G C6 H61 SING N N 14
P6G C6 H62 SING N N 15
P6G O7 C8 SING N N 16
P6G C8 C9 SING N N 17
P6G C8 H81 SING N N 18
P6G C8 H82 SING N N 19
P6G C9 O10 SING N N 20
P6G C9 H91 SING N N 21
P6G C9 H92 SING N N 22
P6G O10 C11 SING N N 23
P6G C11 C12 SING N N 24
P6G C11 H111 SING N N 25
P6G C11 H112 SING N N 26
P6G C12 O13 SING N N 27
P6G C12 H121 SING N N 28
P6G C12 H122 SING N N 29
P6G O13 C14 SING N N 30
P6G C14 C15 SING N N 31
P6G C14 H141 SING N N 32
P6G C14 H142 SING N N 33
P6G C15 O16 SING N N 34
P6G C15 H151 SING N N 35
P6G C15 H152 SING N N 36
P6G O16 C17 SING N N 37
P6G C17 C18 SING N N 38
P6G C17 H171 SING N N 39
P6G C17 H172 SING N N 40
P6G C18 O19 SING N N 41
P6G C18 H181 SING N N 42
P6G C18 H182 SING N N 43
P6G O19 H19 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P6G SMILES ACDLabs 12.01 O(CCO)CCOCCOCCOCCOCCO
P6G SMILES_CANONICAL CACTVS 3.370 OCCOCCOCCOCCOCCOCCO
P6G SMILES CACTVS 3.370 OCCOCCOCCOCCOCCOCCO
P6G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C(COCCOCCOCCOCCOCCO)O
P6G SMILES "OpenEye OEToolkits" 1.7.0 C(COCCOCCOCCOCCOCCO)O
P6G InChI InChI 1.03 InChI=1S/C12H26O7/c13-1-3-15-5-7-17-9-11-19-12-10-18-8-6-16-4-2-14/h13-14H,1-12H2
P6G InChIKey InChI 1.03 IIRDTKBZINWQAW-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P6G "SYSTEMATIC NAME" ACDLabs 12.01 3,6,9,12,15-pentaoxaheptadecane-1,17-diol
P6G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 2-[2-[2-[2-[2-(2-hydroxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P6G 'Create component' 2000-11-29 RCSB
P6G 'Modify descriptor' 2011-06-04 RCSB
P6G 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id P6G
_pdbx_chem_comp_synonyms.name "POLYETHYLENE GLYCOL PEG400"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id P6G
_pdbe_chem_comp_synonyms.name 'POLYETHYLENE GLYCOL PEG400'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P6G O1 O 27.188 0.375 1
P6G C2 C 25.889 -0.375 2
P6G C3 C 24.590 0.375 3
P6G O4 O 23.291 -0.375 4
P6G C5 C 21.992 0.375 5
P6G C6 C 20.693 -0.375 6
P6G O7 O 19.394 0.375 7
P6G C8 C 18.095 -0.375 8
P6G C9 C 16.796 0.375 9
P6G O10 O 15.497 -0.375 10
P6G C11 C 14.198 0.375 11
P6G C12 C 12.899 -0.375 12
P6G O13 O 11.600 0.375 13
P6G C14 C 10.301 -0.375 14
P6G C15 C 9.002 0.375 15
P6G O16 O 7.702 -0.375 16
P6G C17 C 6.404 0.375 17
P6G C18 C 5.104 -0.375 18
P6G O19 O 3.805 0.375 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P6G O1 C2 SINGLE NONE 1
P6G C2 C3 SINGLE NONE 2
P6G C3 O4 SINGLE NONE 3
P6G O4 C5 SINGLE NONE 4
P6G C5 C6 SINGLE NONE 5
P6G C6 O7 SINGLE NONE 6
P6G O7 C8 SINGLE NONE 7
P6G C8 C9 SINGLE NONE 8
P6G C9 O10 SINGLE NONE 9
P6G O10 C11 SINGLE NONE 10
P6G C11 C12 SINGLE NONE 11
P6G C12 O13 SINGLE NONE 12
P6G O13 C14 SINGLE NONE 13
P6G C14 C15 SINGLE NONE 14
P6G C15 O16 SINGLE NONE 15
P6G O16 C17 SINGLE NONE 16
P6G C17 C18 SINGLE NONE 17
P6G C18 O19 SINGLE NONE 18
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id P6G
_pdbe_chem_comp_rdkit_properties.exactmw 282.168
_pdbe_chem_comp_rdkit_properties.amw 282.333
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 45
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.612
_pdbe_chem_comp_rdkit_properties.tpsa 86.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.946
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.267
_pdbe_chem_comp_rdkit_properties.chi0v 8.858
_pdbe_chem_comp_rdkit_properties.chi1v 3.949
_pdbe_chem_comp_rdkit_properties.chi2v 0.760
_pdbe_chem_comp_rdkit_properties.chi3v 0.760
_pdbe_chem_comp_rdkit_properties.chi4v 0.336
_pdbe_chem_comp_rdkit_properties.chi0n 34.858
_pdbe_chem_comp_rdkit_properties.chi1n 16.766
_pdbe_chem_comp_rdkit_properties.chi2n 0.760
_pdbe_chem_comp_rdkit_properties.chi3n 0.760
_pdbe_chem_comp_rdkit_properties.chi4n 0.336
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.280
_pdbe_chem_comp_rdkit_properties.kappa1 3.075
_pdbe_chem_comp_rdkit_properties.kappa2 17.720
_pdbe_chem_comp_rdkit_properties.kappa3 17.720
_pdbe_chem_comp_rdkit_properties.Phi 2.868
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P6G UniChem ChEMBL CHEMBL1235082
P6G UniChem PDBe P6G
P6G UniChem ChEBI 49793
P6G UniChem ZINC ZINC000004521548
P6G UniChem HMDB HMDB0061822
P6G UniChem ACTor 6529-43-7
P6G UniChem Nikkaji J49.380E
P6G UniChem 'EPA CompTox Dashboard' DTXSID2058629
P6G UniChem ChemicalBook CB9488423
P6G UniChem MedChemExpress HY-141230
P6G UniChem ACTor 2615-15-8
P6G UniChem eMolecules 492711
P6G UniChem SureChEMBL SCHEMBL38159
P6G UniChem 'PubChem TPHARMA' 14848799
P6G UniChem PubChem 17472
P6G UniChem Mcule MCULE-1911071258
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P6G O1 -6.627 -4.060 0.681 ETKDGv3 1
P6G C2 -6.649 -3.053 1.656 ETKDGv3 2
P6G C3 -5.941 -1.799 1.148 ETKDGv3 3
P6G O4 -4.598 -2.110 0.845 ETKDGv3 4
P6G C5 -3.943 -0.954 0.368 ETKDGv3 5
P6G C6 -2.490 -1.299 0.051 ETKDGv3 6
P6G O7 -1.787 -0.137 -0.348 ETKDGv3 7
P6G C8 -1.712 -0.060 -1.757 ETKDGv3 8
P6G C9 -1.074 1.263 -2.158 ETKDGv3 9
P6G O10 0.235 1.330 -1.632 ETKDGv3 10
P6G C11 0.828 2.558 -1.996 ETKDGv3 11
P6G C12 2.239 2.622 -1.428 ETKDGv3 12
P6G O13 3.015 1.580 -1.982 ETKDGv3 13
P6G C14 4.275 1.502 -1.341 ETKDGv3 14
P6G C15 4.252 0.419 -0.266 ETKDGv3 15
P6G O16 5.538 0.305 0.305 ETKDGv3 16
P6G C17 5.536 -0.636 1.364 ETKDGv3 17
P6G C18 5.753 0.078 2.694 ETKDGv3 18
P6G O19 4.666 0.917 2.969 ETKDGv3 19
P6G H1 -7.309 -3.813 0.002 ETKDGv3 20
P6G H21 -7.698 -2.808 1.938 ETKDGv3 21
P6G H22 -6.130 -3.424 2.566 ETKDGv3 22
P6G H31 -5.994 -1.025 1.948 ETKDGv3 23
P6G H32 -6.479 -1.430 0.245 ETKDGv3 24
P6G H51 -4.431 -0.582 -0.561 ETKDGv3 25
P6G H52 -3.952 -0.150 1.139 ETKDGv3 26
P6G H61 -2.446 -2.129 -0.694 ETKDGv3 27
P6G H62 -2.012 -1.684 0.977 ETKDGv3 28
P6G H81 -1.086 -0.891 -2.157 ETKDGv3 29
P6G H82 -2.726 -0.111 -2.215 ETKDGv3 30
P6G H91 -1.054 1.316 -3.270 ETKDGv3 31
P6G H92 -1.705 2.092 -1.762 ETKDGv3 32
P6G H111 0.247 3.414 -1.582 ETKDGv3 33
P6G H112 0.889 2.657 -3.105 ETKDGv3 34
P6G H121 2.174 2.537 -0.318 ETKDGv3 35
P6G H122 2.681 3.609 -1.693 ETKDGv3 36
P6G H141 5.030 1.221 -2.106 ETKDGv3 37
P6G H142 4.616 2.471 -0.902 ETKDGv3 38
P6G H151 3.501 0.696 0.507 ETKDGv3 39
P6G H152 3.956 -0.545 -0.742 ETKDGv3 40
P6G H171 6.384 -1.334 1.203 ETKDGv3 41
P6G H172 4.615 -1.266 1.426 ETKDGv3 42
P6G H181 5.854 -0.681 3.501 ETKDGv3 43
P6G H182 6.691 0.676 2.644 ETKDGv3 44
P6G H19 4.869 1.354 3.836 ETKDGv3 45
#