data_P8J
#
_chem_comp.id P8J
_chem_comp.name "methyl 3-O-[(1-beta-D-galactopyranosyl-1H-1,2,3-triazol-4-yl)methyl]-beta-D-galactopyranoside"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H27 N3 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-08-06
_chem_comp.pdbx_modified_date 2020-04-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 437.399
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P8J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Q17
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8J C2 C1 C 0 1 Y N N N N N -21.447 -10.465 2.402 -0.986 0.185 -0.449 C2 P8J 1
P8J C3 C2 C 0 1 N N N N N N -22.658 -12.720 2.325 1.175 -0.117 -1.785 C3 P8J 2
P8J C4 C3 C 0 1 N N N N N N -20.180 -5.497 0.302 -5.831 -2.237 1.523 C4 P8J 3
P8J C5 C4 C 0 1 N N R N N N -19.541 -6.515 1.234 -5.189 -0.860 1.340 C5 P8J 4
P8J C6 C5 C 0 1 N N R N N N -19.645 -8.747 2.013 -3.410 0.270 0.196 C6 P8J 5
P8J C7 C6 C 0 1 N N R N N N -18.188 -8.932 1.687 -4.379 1.294 -0.400 C7 P8J 6
P8J C10 C7 C 0 1 N N N N N N -21.498 -14.700 -2.242 5.868 2.312 1.316 C10 P8J 7
P8J C11 C8 C 0 1 N N R N N N -22.576 -13.694 -1.806 5.317 1.310 0.299 C11 P8J 8
P8J C12 C9 C 0 1 N N R N N N -24.747 -12.618 -2.074 5.337 -1.017 -0.279 C12 P8J 9
P8J C14 C10 C 0 1 N N S N N N -23.616 -12.604 0.142 3.243 0.291 -0.643 C14 P8J 10
P8J C16 C11 C 0 1 N N N N N N -25.973 -12.583 -4.152 7.295 -2.362 0.040 C16 P8J 11
P8J O11 O1 O 0 1 N N N N N N -26.047 -12.634 -2.725 5.871 -2.280 0.124 O11 P8J 12
P8J C13 C12 C 0 1 N N R N N N -24.953 -12.619 -0.564 3.807 -1.083 -0.268 C13 P8J 13
P8J O9 O2 O 0 1 N N N N N N -25.662 -11.442 -0.186 3.365 -2.056 -1.216 O9 P8J 14
P8J O8 O3 O 0 1 N N N N N N -23.883 -13.727 -2.484 5.775 -0.003 0.627 O8 P8J 15
P8J O7 O4 O 0 1 N N N N N N -21.153 -14.498 -3.611 7.292 2.371 1.203 O7 P8J 16
P8J C15 C13 C 0 1 N N S N N N -22.773 -13.789 -0.296 3.787 1.338 0.333 C15 P8J 17
P8J O10 O5 O 0 1 N N N N N N -23.446 -15.017 0.030 3.333 1.040 1.655 O10 P8J 18
P8J O6 O6 O 0 1 N N N N N N -23.855 -12.607 1.552 1.816 0.259 -0.564 O6 P8J 19
P8J C1 C14 C 0 1 Y N N N N N -21.537 -11.719 1.994 -0.319 -0.117 -1.588 C1 P8J 20
P8J N3 N1 N 0 1 Y N N N N N -20.469 -11.988 1.255 -1.247 -0.417 -2.503 N3 P8J 21
P8J N2 N2 N 0 1 Y N N N N N -19.781 -10.982 1.220 -2.411 -0.307 -1.968 N2 P8J 22
P8J N1 N3 N 0 1 Y N N N N N -20.281 -10.062 1.906 -2.301 0.047 -0.735 N1 P8J 23
P8J O2 O7 O 0 1 N N N N N N -20.213 -7.792 1.079 -4.099 -0.961 0.421 O2 P8J 24
P8J O1 O8 O 0 1 N N N N N N -21.555 -5.370 0.646 -4.895 -3.120 2.144 O1 P8J 25
P8J C9 C15 C 0 1 N N R N N N -18.040 -6.650 0.944 -6.230 0.119 0.789 C9 P8J 26
P8J O5 O9 O 0 1 N N N N N N -17.837 -7.130 -0.374 -6.750 -0.381 -0.444 O5 P8J 27
P8J C8 C16 C 0 1 N N S N N N -17.472 -7.641 1.913 -5.565 1.478 0.551 C8 P8J 28
P8J O4 O10 O 0 1 N N N N N N -16.076 -7.862 1.658 -6.511 2.377 -0.031 O4 P8J 29
P8J O3 O11 O 0 1 N N N N N N -17.629 -9.856 2.624 -3.707 2.544 -0.572 O3 P8J 30
P8J H1 H1 H 0 1 N N N N N N -22.152 -9.902 2.996 -0.555 0.474 0.498 H1 P8J 31
P8J H2 H2 H 0 1 N N N N N N -22.928 -12.584 3.383 1.438 0.595 -2.568 H2 P8J 32
P8J H3 H3 H 0 1 N N N N N N -22.257 -13.734 2.176 1.503 -1.115 -2.076 H3 P8J 33
P8J H4 H4 H 0 1 N N N N N N -20.088 -5.839 -0.740 -6.716 -2.144 2.153 H4 P8J 34
P8J H5 H5 H 0 1 N N N N N N -19.678 -4.525 0.415 -6.118 -2.637 0.551 H5 P8J 35
P8J H6 H6 H 0 1 N N N N N N -19.662 -6.163 2.269 -4.823 -0.499 2.300 H6 P8J 36
P8J H7 H7 H 0 1 N N N N N N -19.741 -8.369 3.042 -3.020 0.646 1.142 H7 P8J 37
P8J H8 H8 H 0 1 N N N N N N -18.062 -9.274 0.649 -4.738 0.937 -1.365 H8 P8J 38
P8J H9 H9 H 0 1 N N N N N N -21.883 -15.722 -2.112 5.447 3.298 1.120 H9 P8J 39
P8J H10 H10 H 0 1 N N N N N N -20.602 -14.564 -1.619 5.596 1.995 2.322 H10 P8J 40
P8J H11 H11 H 0 1 N N N N N N -22.150 -12.697 -1.994 5.663 1.578 -0.699 H11 P8J 41
P8J H12 H12 H 0 1 N N N N N N -24.242 -11.676 -2.336 5.684 -0.780 -1.285 H12 P8J 42
P8J H13 H13 H 0 1 N N N N N N -23.086 -11.681 -0.138 3.546 0.545 -1.659 H13 P8J 43
P8J H14 H14 H 0 1 N N N N N N -26.989 -12.599 -4.573 7.622 -3.351 0.363 H14 P8J 44
P8J H15 H15 H 0 1 N N N N N N -25.463 -11.658 -4.460 7.609 -2.195 -0.990 H15 P8J 45
P8J H16 H16 H 0 1 N N N N N N -25.410 -13.453 -4.521 7.741 -1.604 0.683 H16 P8J 46
P8J H17 H17 H 0 1 N N N N N N -25.512 -13.521 -0.273 3.462 -1.360 0.727 H17 P8J 47
P8J H18 H18 H 0 1 N N N N N N -25.792 -11.439 0.755 3.689 -2.950 -1.043 H18 P8J 48
P8J H19 H19 H 0 1 N N N N N N -20.487 -15.126 -3.866 7.710 2.987 1.819 H19 P8J 49
P8J H20 H20 H 0 1 N N N N N N -21.793 -13.743 0.201 3.434 2.328 0.041 H20 P8J 50
P8J H21 H21 H 0 1 N N N N N N -23.567 -15.072 0.971 3.644 1.661 2.327 H21 P8J 51
P8J H22 H22 H 0 1 N N N N N N -21.968 -4.736 0.071 -5.235 -4.013 2.292 H22 P8J 52
P8J H23 H23 H 0 1 N N N N N N -17.555 -5.673 1.085 -7.041 0.231 1.509 H23 P8J 53
P8J H24 H24 H 0 1 N N N N N N -16.905 -7.210 -0.543 -7.416 0.190 -0.851 H24 P8J 54
P8J H25 H25 H 0 1 N N N N N N -17.633 -7.295 2.945 -5.212 1.882 1.500 H25 P8J 55
P8J H26 H26 H 0 1 N N N N N N -15.736 -8.492 2.282 -6.155 3.257 -0.215 H26 P8J 56
P8J H27 H27 H 0 1 N N N N N N -18.050 -10.702 2.525 -4.264 3.242 -0.943 H27 P8J 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8J C16 O11 SING N N 1
P8J O7 C10 SING N N 2
P8J O11 C12 SING N N 3
P8J O8 C12 SING N N 4
P8J O8 C11 SING N N 5
P8J C10 C11 SING N N 6
P8J C12 C13 SING N N 7
P8J C11 C15 SING N N 8
P8J C13 O9 SING N N 9
P8J C13 C14 SING N N 10
P8J O5 C9 SING N N 11
P8J C15 O10 SING N N 12
P8J C15 C14 SING N N 13
P8J C14 O6 SING N N 14
P8J C4 O1 SING N N 15
P8J C4 C5 SING N N 16
P8J C9 C5 SING N N 17
P8J C9 C8 SING N N 18
P8J O2 C5 SING N N 19
P8J O2 C6 SING N N 20
P8J N2 N3 DOUB Y N 21
P8J N2 N1 SING Y N 22
P8J N3 C1 SING Y N 23
P8J O6 C3 SING N N 24
P8J O4 C8 SING N N 25
P8J C7 C8 SING N N 26
P8J C7 C6 SING N N 27
P8J C7 O3 SING N N 28
P8J N1 C6 SING N N 29
P8J N1 C2 SING Y N 30
P8J C1 C3 SING N N 31
P8J C1 C2 DOUB Y N 32
P8J C2 H1 SING N N 33
P8J C3 H2 SING N N 34
P8J C3 H3 SING N N 35
P8J C4 H4 SING N N 36
P8J C4 H5 SING N N 37
P8J C5 H6 SING N N 38
P8J C6 H7 SING N N 39
P8J C7 H8 SING N N 40
P8J C10 H9 SING N N 41
P8J C10 H10 SING N N 42
P8J C11 H11 SING N N 43
P8J C12 H12 SING N N 44
P8J C14 H13 SING N N 45
P8J C16 H14 SING N N 46
P8J C16 H15 SING N N 47
P8J C16 H16 SING N N 48
P8J C13 H17 SING N N 49
P8J O9 H18 SING N N 50
P8J O7 H19 SING N N 51
P8J C15 H20 SING N N 52
P8J O10 H21 SING N N 53
P8J O1 H22 SING N N 54
P8J C9 H23 SING N N 55
P8J O5 H24 SING N N 56
P8J C8 H25 SING N N 57
P8J O4 H26 SING N N 58
P8J O3 H27 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8J SMILES ACDLabs 12.01 c2c(COC1C(C(OC)OC(CO)C1O)O)nnn2C3C(C(C(C(CO)O3)O)O)O
P8J InChI InChI 1.03 InChI=1S/C16H27N3O11/c1-27-16-13(26)14(10(23)8(4-21)30-16)28-5-6-2-19(18-17-6)15-12(25)11(24)9(22)7(3-20)29-15/h2,7-16,20-26H,3-5H2,1H3/t7-,8-,9+,10+,11+,12-,13-,14+,15-,16-/m1/s1
P8J InChIKey InChI 1.03 KDTWYQHAYRRJMY-JEECUGMMSA-N
P8J SMILES_CANONICAL CACTVS 3.385 CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OCc2cn(nn2)[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]1O
P8J SMILES CACTVS 3.385 CO[CH]1O[CH](CO)[CH](O)[CH](OCc2cn(nn2)[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]1O
P8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O
P8J SMILES "OpenEye OEToolkits" 2.0.7 COC1C(C(C(C(O1)CO)O)OCc2cn(nn2)C3C(C(C(C(O3)CO)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P8J "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 3-O-[(1-beta-D-galactopyranosyl-1H-1,2,3-triazol-4-yl)methyl]-beta-D-galactopyranoside"
P8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]-1,2,3-triazol-1-yl]oxane-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8J 'Create component' 2019-08-06 RCSB
P8J 'Initial release' 2020-04-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P8J C2 C 7.830 -0.998 1
P8J C3 C 9.043 1.384 2
P8J C4 C 7.750 -7.592 3
P8J C5 C 7.140 -6.222 4
P8J C6 C 7.412 -3.638 5
P8J C7 C 5.920 -3.481 6
P8J C10 C 12.941 6.634 7
P8J C11 C 11.642 5.884 8
P8J C12 C 9.043 5.884 9
P8J C14 C 10.343 3.634 10
P8J C16 C 7.745 8.134 11
P8J O11 O 7.745 6.634 12
P8J C13 C 9.043 4.384 13
P8J O9 O 7.745 3.634 14
P8J O8 O 10.343 6.634 15
P8J O7 O 12.941 8.134 16
P8J C15 C 11.642 4.384 17
P8J O10 O 12.941 3.634 18
P8J O6 O 10.343 2.134 19
P8J C1 C 9.043 -0.116 20
P8J N3 N 10.257 -0.998 21
P8J N2 N 9.793 -2.425 22
P8J N1 N 8.293 -2.425 23
P8J O2 O 8.022 -5.008 24
P8J O1 O 9.242 -7.749 25
P8J C9 C 5.649 -6.065 26
P8J O5 O 4.767 -7.279 27
P8J C8 C 5.038 -4.695 28
P8J O4 O 3.547 -4.538 29
P8J O3 O 5.310 -2.111 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P8J C16 O11 SINGLE NONE 1
P8J O7 C10 SINGLE NONE 2
P8J C12 O11 SINGLE BEGINDASH 3
P8J O8 C12 SINGLE NONE 4
P8J O8 C11 SINGLE NONE 5
P8J C11 C10 SINGLE BEGINDASH 6
P8J C12 C13 SINGLE NONE 7
P8J C11 C15 SINGLE NONE 8
P8J C13 O9 SINGLE BEGINWEDGE 9
P8J C13 C14 SINGLE NONE 10
P8J C9 O5 SINGLE BEGINDASH 11
P8J C15 O10 SINGLE BEGINDASH 12
P8J C15 C14 SINGLE NONE 13
P8J C14 O6 SINGLE BEGINDASH 14
P8J C4 O1 SINGLE NONE 15
P8J C5 C4 SINGLE BEGINDASH 16
P8J C9 C5 SINGLE NONE 17
P8J C9 C8 SINGLE NONE 18
P8J O2 C5 SINGLE NONE 19
P8J O2 C6 SINGLE NONE 20
P8J N2 N3 DOUBLE NONE 21
P8J N2 N1 SINGLE NONE 22
P8J N3 C1 SINGLE NONE 23
P8J O6 C3 SINGLE NONE 24
P8J C8 O4 SINGLE BEGINDASH 25
P8J C7 C8 SINGLE NONE 26
P8J C7 C6 SINGLE NONE 27
P8J C7 O3 SINGLE BEGINWEDGE 28
P8J C6 N1 SINGLE BEGINDASH 29
P8J N1 C2 SINGLE NONE 30
P8J C1 C3 SINGLE NONE 31
P8J C1 C2 DOUBLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P8J MurckoScaffold S1 scaffold 'c1c(COC2CCOCC2)nnn1[C@H]1CCCCO1' InChI=1S/C13H21N3O3/c1-2-6-18-13(3-1)16-9-11(14-15-16)10-19-12-4-7-17-8-5-12/h9,12-13H,1-8,10H2/t13-/m1/s1 XPHSHFQYCQDPDR-CYBMUJFWSA-N
P8J pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P8J C2 S1 1
P8J C3 S1 1
P8J C5 S1 1
P8J C6 S1 1
P8J C7 S1 1
P8J C11 S1 1
P8J C12 S1 1
P8J C14 S1 1
P8J C13 S1 1
P8J O8 S1 1
P8J C15 S1 1
P8J O6 S1 1
P8J C1 S1 1
P8J N3 S1 1
P8J N2 S1 1
P8J N1 S1 1
P8J O2 S1 1
P8J C9 S1 1
P8J C8 S1 1
P8J C15 F1 1
P8J C11 F1 1
P8J O8 F1 1
P8J C12 F1 1
P8J C13 F1 1
P8J C14 F1 1
P8J O11 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P8J
_pdbe_chem_comp_rdkit_properties.exactmw 437.165
_pdbe_chem_comp_rdkit_properties.amw 437.402
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 208.879
_pdbe_chem_comp_rdkit_properties.tpsa 209.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.834
_pdbe_chem_comp_rdkit_properties.CrippenMR 92.119
_pdbe_chem_comp_rdkit_properties.chi0v 13.832
_pdbe_chem_comp_rdkit_properties.chi1v 7.133
_pdbe_chem_comp_rdkit_properties.chi2v 3.177
_pdbe_chem_comp_rdkit_properties.chi3v 3.177
_pdbe_chem_comp_rdkit_properties.chi4v 1.879
_pdbe_chem_comp_rdkit_properties.chi0n 40.832
_pdbe_chem_comp_rdkit_properties.chi1n 19.990
_pdbe_chem_comp_rdkit_properties.chi2n 3.177
_pdbe_chem_comp_rdkit_properties.chi3n 3.177
_pdbe_chem_comp_rdkit_properties.chi4n 1.879
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.300
_pdbe_chem_comp_rdkit_properties.kappa1 6.614
_pdbe_chem_comp_rdkit_properties.kappa2 9.883
_pdbe_chem_comp_rdkit_properties.kappa3 4.486
_pdbe_chem_comp_rdkit_properties.Phi 2.179
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P8J UniChem PDBe P8J
P8J UniChem PubChem 132535577
P8J UniChem Nikkaji J3.588.694J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P8J C2 -1.405 -0.368 0.683 ETKDGv3 1
P8J C3 1.022 -0.534 1.303 ETKDGv3 2
P8J C4 -5.611 1.565 -1.555 ETKDGv3 3
P8J C5 -5.459 0.249 -0.776 ETKDGv3 4
P8J C6 -3.886 -1.005 0.416 ETKDGv3 5
P8J C7 -4.445 -0.712 1.833 ETKDGv3 6
P8J C10 6.097 -1.539 -1.162 ETKDGv3 7
P8J C11 5.445 -0.901 0.088 ETKDGv3 8
P8J C12 4.959 1.310 -0.709 ETKDGv3 9
P8J C14 3.041 -0.013 0.263 ETKDGv3 10
P8J C16 6.783 2.172 -1.858 ETKDGv3 11
P8J O11 5.604 1.405 -1.967 ETKDGv3 12
P8J C13 3.490 0.853 -0.912 ETKDGv3 13
P8J O9 2.644 1.970 -1.017 ETKDGv3 14
P8J O8 5.711 0.492 0.186 ETKDGv3 15
P8J O7 5.360 -1.280 -2.324 ETKDGv3 16
P8J C15 3.948 -1.261 0.348 ETKDGv3 17
P8J O10 3.508 -2.255 -0.547 ETKDGv3 18
P8J O6 1.687 -0.389 0.066 ETKDGv3 19
P8J C1 -0.348 -1.072 1.053 ETKDGv3 20
P8J N3 -0.697 -2.455 1.112 ETKDGv3 21
P8J N2 -1.926 -2.555 0.800 ETKDGv3 22
P8J N1 -2.459 -1.299 0.491 ETKDGv3 23
P8J O2 -4.085 0.111 -0.433 ETKDGv3 24
P8J O1 -6.857 1.609 -2.196 ETKDGv3 25
P8J C9 -6.398 0.158 0.478 ETKDGv3 26
P8J O5 -7.438 1.102 0.428 ETKDGv3 27
P8J C8 -5.591 0.325 1.778 ETKDGv3 28
P8J O4 -5.068 1.629 1.835 ETKDGv3 29
P8J O3 -4.925 -1.901 2.408 ETKDGv3 30
P8J H1 -1.468 0.705 0.552 ETKDGv3 31
P8J H2 1.558 -1.246 1.969 ETKDGv3 32
P8J H3 0.933 0.450 1.815 ETKDGv3 33
P8J H4 -5.501 2.431 -0.864 ETKDGv3 34
P8J H5 -4.808 1.627 -2.323 ETKDGv3 35
P8J H6 -5.730 -0.571 -1.482 ETKDGv3 36
P8J H7 -4.391 -1.903 -0.013 ETKDGv3 37
P8J H8 -3.640 -0.295 2.484 ETKDGv3 38
P8J H9 6.167 -2.640 -1.012 ETKDGv3 39
P8J H10 7.130 -1.141 -1.275 ETKDGv3 40
P8J H11 6.006 -1.357 0.935 ETKDGv3 41
P8J H12 4.902 2.317 -0.233 ETKDGv3 42
P8J H13 3.179 0.599 1.190 ETKDGv3 43
P8J H14 7.498 1.723 -1.134 ETKDGv3 44
P8J H15 7.283 2.192 -2.848 ETKDGv3 45
P8J H16 6.553 3.224 -1.578 ETKDGv3 46
P8J H17 3.400 0.245 -1.843 ETKDGv3 47
P8J H18 2.821 2.379 -1.904 ETKDGv3 48
P8J H19 5.860 -1.705 -3.068 ETKDGv3 49
P8J H20 3.873 -1.652 1.392 ETKDGv3 50
P8J H21 2.785 -2.762 -0.093 ETKDGv3 51
P8J H22 -6.898 2.487 -2.657 ETKDGv3 52
P8J H23 -6.844 -0.866 0.485 ETKDGv3 53
P8J H24 -8.128 0.808 1.080 ETKDGv3 54
P8J H25 -6.278 0.166 2.644 ETKDGv3 55
P8J H26 -4.834 1.804 2.784 ETKDGv3 56
P8J H27 -4.130 -2.430 2.679 ETKDGv3 57
#