data_P8U
#
_chem_comp.id P8U
_chem_comp.name
'[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C24 H42 N3 O8 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2022-05-26
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 532.671
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P8U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8CZW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8U N1 N1 N 0 1 N N N N N N 20.944 20.647 -1.285 1.109 -0.873 -0.020 N1 P8U 1
P8U C2 C1 C 0 1 N N S N N N 20.971 19.233 -0.985 -0.130 -0.955 -0.798 C2 P8U 2
P8U C3 C2 C 0 1 N N N N N N 22.021 18.937 0.094 -0.363 -2.403 -1.235 C3 P8U 3
P8U C4 C3 C 0 1 N N N N N N 23.428 19.425 -0.350 -1.555 -2.461 -2.192 C4 P8U 4
P8U C6 C4 C 0 1 N N N N N N 23.928 18.617 -1.567 -1.204 -1.732 -3.490 C6 P8U 5
P8U C8 C5 C 0 1 N N S N N N 17.820 16.987 -0.463 -3.651 0.018 0.342 C8 P8U 6
P8U C9 C6 C 0 1 N N N N N N 16.815 16.800 -1.625 -4.673 0.792 -0.493 C9 P8U 7
P8U C10 C7 C 0 1 N N S N N N 16.421 18.181 -2.261 -4.037 2.085 -1.007 C10 P8U 8
P8U C11 C8 C 0 1 N N N N N N 15.442 17.966 -3.386 -5.028 2.869 -1.839 C11 P8U 9
P8U C16 C9 C 0 1 N N S N N N 19.110 24.216 -3.892 5.865 -0.785 0.285 C16 P8U 10
P8U C17 C10 C 0 1 N N R N N N 18.952 25.585 -3.153 7.266 -0.589 -0.298 C17 P8U 11
P8U C19 C11 C 0 1 N N N N N N 20.087 26.613 -3.033 8.290 0.157 0.560 C19 P8U 12
P8U C20 C12 C 0 1 N N N N N N 20.955 26.319 -1.802 7.775 1.567 0.857 C20 P8U 13
P8U C21 C13 C 0 1 N N N N N N 22.056 27.391 -1.596 8.799 2.314 1.714 C21 P8U 14
P8U C22 C14 C 0 1 N N N N N N 21.498 28.823 -1.565 10.127 2.404 0.960 C22 P8U 15
P8U C1 C15 C 0 1 N N N N N N 19.920 21.135 -2.196 2.297 -0.798 -0.651 C1 P8U 16
P8U C12 C16 C 0 1 N N N N N N 14.575 19.753 -1.950 -4.007 4.415 -0.438 C12 P8U 17
P8U C13 C17 C 0 1 N N N N N N 15.779 19.057 -1.229 -3.701 3.029 0.172 C13 P8U 18
P8U C14 C18 C 0 1 N N S N N N 18.150 15.645 0.189 -4.302 -1.252 0.895 C14 P8U 19
P8U C15 C19 C 0 1 N N N N N N 18.665 22.958 -3.099 4.683 -0.739 -0.686 C15 P8U 20
P8U C18 C20 C 0 1 N N N N N N 17.969 25.120 -4.263 6.822 -1.974 0.178 C18 P8U 21
P8U C23 C21 C 0 1 N N N N N N 20.545 29.108 -2.738 10.642 0.994 0.663 C23 P8U 22
P8U C24 C22 C 0 1 N N N N N N 19.468 28.013 -2.907 9.618 0.248 -0.195 C24 P8U 23
P8U C5 C23 C 0 1 N N N N N N 24.425 19.181 0.818 -1.890 -3.921 -2.502 C5 P8U 24
P8U C7 C24 C 0 1 N N N N N N 19.601 18.803 -0.459 -1.287 -0.494 0.050 C7 P8U 25
P8U N2 N2 N 0 1 N N N N N N 19.096 17.503 -0.918 -2.508 -0.346 -0.500 N2 P8U 26
P8U N3 N3 N 0 1 N N N N N N 14.321 18.913 -3.211 -4.994 4.168 -1.495 N3 P8U 27
P8U O1 O1 O 0 1 N N N N N N 19.275 20.362 -2.832 2.338 -0.705 -1.862 O1 P8U 28
P8U O2 O2 O 0 1 N N N N N N 15.512 17.190 -4.281 -5.748 2.395 -2.691 O2 P8U 29
P8U O3 O3 O 0 1 N N N N N N 16.998 15.051 0.739 -3.315 -2.041 1.562 O3 P8U 30
P8U O4 O4 O 0 1 N N N N N N 18.970 19.495 0.285 -1.119 -0.256 1.227 O4 P8U 31
P8U O5 O5 O 0 1 N N N N N N 19.743 22.534 -2.280 3.440 -0.825 0.060 O5 P8U 32
P8U S1 S1 S 1 1 N Y N N N N 18.969 14.551 -1.000 -5.609 -0.800 2.068 S1 P8U 33
P8U H1 H1 H 0 1 N N N N N N 21.610 21.272 -0.878 1.074 -0.870 0.949 H1 P8U 34
P8U H2 H2 H 0 1 N N N N N N 21.210 18.654 -1.889 -0.048 -0.318 -1.679 H2 P8U 35
P8U H3 H3 H 0 1 N N N N N N 21.738 19.453 1.023 0.527 -2.777 -1.741 H3 P8U 36
P8U H4 H4 H 0 1 N N N N N N 22.056 17.852 0.274 -0.569 -3.018 -0.359 H4 P8U 37
P8U H5 H5 H 0 1 N N N N N N 23.393 20.497 -0.596 -2.417 -1.981 -1.728 H5 P8U 38
P8U H6 H6 H 0 1 N N N N N N 24.924 18.978 -1.864 -0.391 -2.256 -3.993 H6 P8U 39
P8U H7 H7 H 0 1 N N N N N N 23.989 17.552 -1.300 -2.077 -1.707 -4.141 H7 P8U 40
P8U H8 H8 H 0 1 N N N N N N 23.227 18.745 -2.405 -0.892 -0.712 -3.262 H8 P8U 41
P8U H9 H9 H 0 1 N N N N N N 17.380 17.659 0.289 -3.310 0.641 1.168 H9 P8U 42
P8U H10 H10 H 0 1 N N N N N N 15.908 16.310 -1.240 -4.989 0.182 -1.339 H10 P8U 43
P8U H11 H11 H 0 1 N N N N N N 17.274 16.166 -2.398 -5.538 1.033 0.124 H11 P8U 44
P8U H12 H12 H 0 1 N N N N N N 17.329 18.666 -2.648 -3.140 1.864 -1.586 H12 P8U 45
P8U H13 H13 H 0 1 N N N N N N 19.951 24.110 -4.593 5.672 -0.381 1.279 H13 P8U 46
P8U H14 H14 H 0 1 N N N N N N 18.497 25.416 -2.166 7.346 -0.428 -1.373 H14 P8U 47
P8U H15 H15 H 0 1 N N N N N N 20.712 26.572 -3.937 8.440 -0.379 1.496 H15 P8U 48
P8U H16 H16 H 0 1 N N N N N N 20.311 26.296 -0.911 7.625 2.104 -0.080 H16 P8U 49
P8U H17 H17 H 0 1 N N N N N N 21.435 25.338 -1.932 6.829 1.503 1.394 H17 P8U 50
P8U H18 H18 H 0 1 N N N N N N 22.565 27.192 -0.642 8.432 3.318 1.926 H18 P8U 51
P8U H19 H19 H 0 1 N N N N N N 22.780 27.314 -2.421 8.949 1.777 2.651 H19 P8U 52
P8U H20 H20 H 0 1 N N N N N N 22.339 29.531 -1.613 9.977 2.941 0.023 H20 P8U 53
P8U H21 H21 H 0 1 N N N N N N 20.950 28.968 -0.622 10.856 2.936 1.571 H21 P8U 54
P8U H22 H22 H 0 1 N N N N N N 14.833 20.787 -2.221 -4.425 5.076 0.321 H22 P8U 55
P8U H23 H23 H 0 1 N N N N N N 13.686 19.755 -1.302 -3.101 4.850 -0.859 H23 P8U 56
P8U H24 H24 H 0 1 N N N N N N 15.421 18.453 -0.382 -4.345 2.828 1.028 H24 P8U 57
P8U H25 H25 H 0 1 N N N N N N 16.495 19.809 -0.866 -2.650 2.948 0.449 H25 P8U 58
P8U H26 H26 H 0 1 N N N N N N 18.893 15.821 0.981 -4.733 -1.826 0.074 H26 P8U 59
P8U H27 H27 H 0 1 N N N N N N 17.797 23.204 -2.470 4.708 0.197 -1.244 H27 P8U 60
P8U H28 H28 H 0 1 N N N N N N 18.394 22.155 -3.800 4.750 -1.578 -1.379 H28 P8U 61
P8U H29 H29 H 0 1 N N N N N N 17.969 25.627 -5.239 7.259 -2.353 1.102 H29 P8U 62
P8U H30 H30 H 0 1 N N N N N N 16.940 24.837 -3.997 6.609 -2.724 -0.584 H30 P8U 63
P8U H31 H31 H 0 1 N N N N N N 21.135 29.168 -3.665 11.588 1.059 0.125 H31 P8U 64
P8U H32 H32 H 0 1 N N N N N N 20.044 30.071 -2.559 10.792 0.458 1.599 H32 P8U 65
P8U H33 H33 H 0 1 N N N N N N 18.884 28.226 -3.814 9.984 -0.757 -0.406 H33 P8U 66
P8U H34 H34 H 0 1 N N N N N N 18.803 28.030 -2.031 9.468 0.785 -1.131 H34 P8U 67
P8U H35 H35 H 0 1 N N N N N N 24.097 19.744 1.704 -2.141 -4.440 -1.577 H35 P8U 68
P8U H36 H36 H 0 1 N N N N N N 24.455 18.108 1.056 -2.740 -3.963 -3.183 H36 P8U 69
P8U H37 H37 H 0 1 N N N N N N 25.429 19.518 0.520 -1.028 -4.401 -2.966 H37 P8U 70
P8U H38 H38 H 0 1 N N N N N N 19.643 16.963 -1.557 -2.631 -0.481 -1.452 H38 P8U 71
P8U H39 H39 H 0 1 N N N N N N 13.528 18.994 -3.814 -5.550 4.855 -1.896 H39 P8U 72
P8U H40 H40 H 0 1 N N N N N N 16.596 15.651 1.356 -2.584 -2.319 0.994 H40 P8U 73
P8U O6 O6 O 0 1 N Y N N N N 18.927 12.929 -0.157 -6.138 -1.887 2.814 O6 P8U 74
P8U O7 O7 O 0 1 N Y N N N N ? ? ? -5.043 0.221 3.045 O7 P8U 75
P8U O8 O8 O 0 1 N Y N N N N ? ? ? -6.747 -0.154 1.291 O8 P8U 76
P8U H41 H41 H 0 1 N Y N N N N ? ? ? -4.660 1.001 2.621 H41 P8U 77
P8U H42 H42 H 0 1 N Y N N N N ? ? ? -7.494 0.121 1.841 H42 P8U 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8U O2 C11 DOUB N N 1
P8U C18 C16 SING N N 2
P8U C18 C17 SING N N 3
P8U C16 C17 SING N N 4
P8U C16 C15 SING N N 5
P8U C11 N3 SING N N 6
P8U C11 C10 SING N N 7
P8U N3 C12 SING N N 8
P8U C17 C19 SING N N 9
P8U C15 O5 SING N N 10
P8U C19 C24 SING N N 11
P8U C19 C20 SING N N 12
P8U C24 C23 SING N N 13
P8U O1 C1 DOUB N N 14
P8U C23 C22 SING N N 15
P8U O5 C1 SING N N 16
P8U C10 C9 SING N N 17
P8U C10 C13 SING N N 18
P8U C1 N1 SING N N 19
P8U C12 C13 SING N N 20
P8U C20 C21 SING N N 21
P8U C9 C8 SING N N 22
P8U C21 C22 SING N N 23
P8U C6 C4 SING N N 24
P8U N1 C2 SING N N 25
P8U S1 C14 SING N N 26
P8U C2 C7 SING N N 27
P8U C2 C3 SING N N 28
P8U N2 C8 SING N N 29
P8U N2 C7 SING N N 30
P8U C8 C14 SING N N 31
P8U C7 O4 DOUB N N 32
P8U C4 C3 SING N N 33
P8U C4 C5 SING N N 34
P8U C14 O3 SING N N 35
P8U N1 H1 SING N N 36
P8U C2 H2 SING N N 37
P8U C3 H3 SING N N 38
P8U C3 H4 SING N N 39
P8U C4 H5 SING N N 40
P8U C6 H6 SING N N 41
P8U C6 H7 SING N N 42
P8U C6 H8 SING N N 43
P8U C8 H9 SING N N 44
P8U C9 H10 SING N N 45
P8U C9 H11 SING N N 46
P8U C10 H12 SING N N 47
P8U C16 H13 SING N N 48
P8U C17 H14 SING N N 49
P8U C19 H15 SING N N 50
P8U C20 H16 SING N N 51
P8U C20 H17 SING N N 52
P8U C21 H18 SING N N 53
P8U C21 H19 SING N N 54
P8U C22 H20 SING N N 55
P8U C22 H21 SING N N 56
P8U C12 H22 SING N N 57
P8U C12 H23 SING N N 58
P8U C13 H24 SING N N 59
P8U C13 H25 SING N N 60
P8U C14 H26 SING N N 61
P8U C15 H27 SING N N 62
P8U C15 H28 SING N N 63
P8U C18 H29 SING N N 64
P8U C18 H30 SING N N 65
P8U C23 H31 SING N N 66
P8U C23 H32 SING N N 67
P8U C24 H33 SING N N 68
P8U C24 H34 SING N N 69
P8U C5 H35 SING N N 70
P8U C5 H36 SING N N 71
P8U C5 H37 SING N N 72
P8U N2 H38 SING N N 73
P8U N3 H39 SING N N 74
P8U O3 H40 SING N N 75
P8U S1 O6 DOUB N N 76
P8U S1 O7 SING N N 77
P8U S1 O8 SING N N 78
P8U O7 H41 SING N N 79
P8U O8 H42 SING N N 80
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8U InChI InChI 1.03 'InChI=1S/C24H40N3O8S/c1-14(2)10-19(27-24(31)35-13-17-11-18(17)15-6-4-3-5-7-15)22(29)26-20(23(30)36(32,33)34)12-16-8-9-25-21(16)28/h14-20,23,30H,3-13H2,1-2H3,(H3-2,25,26,27,28,29,31,32,33,34)/q-1/p+2/t16-,17+,18+,19-,20-,23-/m0/s1'
P8U InChIKey InChI 1.03 BNNIGFVXMNVYNU-MWOXCZGJSA-P
P8U SMILES_CANONICAL CACTVS 3.385 'CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]1C2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S+](O)(O)=O'
P8U SMILES CACTVS 3.385 'CC(C)C[CH](NC(=O)OC[CH]1C[CH]1C2CCCCC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S+](O)(O)=O'
P8U SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)[S+](=O)(O)O)NC(=O)OC[C@H]2C[C@@H]2C3CCCCC3'
P8U SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)[S+](=O)(O)O)NC(=O)OCC2CC2C3CCCCC3'
#
_pdbx_chem_comp_identifier.comp_id P8U
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8U 'Create component' 2022-05-26 RCSB
P8U 'Modify coordinates' 2022-05-26 RCSB
P8U 'Initial release' 2022-06-22 RCSB
P8U 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id P8U
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C14
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 8CZW
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P8U N1 N -1.131 -0.263 1
P8U C2 C 0.170 0.490 2
P8U C3 C 0.168 1.986 3
P8U C4 C 1.465 2.734 4
P8U C6 C 1.467 4.233 5
P8U C8 C 4.078 -0.280 6
P8U C9 C 5.474 0.485 7
P8U C10 C 6.843 -0.280 8
P8U C11 C 8.220 0.321 9
P8U C16 C -6.334 -0.263 10
P8U C17 C -7.831 -0.260 11
P8U C19 C -9.130 0.487 12
P8U C20 C -10.430 -0.258 13
P8U C21 C -11.729 0.489 14
P8U C22 C -11.728 1.993 15
P8U C1 C -2.433 0.486 16
P8U C12 C 8.461 -2.094 17
P8U C13 C 6.996 -1.772 18
P8U C14 C 4.019 -1.792 19
P8U C15 C -5.032 0.486 20
P8U C18 C -7.082 -1.563 21
P8U C23 C -10.428 2.739 22
P8U C24 C -9.129 1.991 23
P8U C5 C 2.763 1.982 24
P8U C7 C 1.473 -0.258 25
P8U N2 N 2.787 0.494 26
P8U N3 N 9.217 -0.797 27
P8U O1 O -2.434 1.985 28
P8U O2 O 8.538 1.788 29
P8U O3 O 2.707 -2.515 30
P8U O4 O 1.470 -1.760 31
P8U O5 O -3.733 -0.265 32
P8U S1 S 5.253 -2.512 33
P8U O6 O 6.593 -3.196 34
P8U O7 O 4.539 -3.829 35
P8U O8 O 5.883 -1.209 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P8U O2 C11 DOUBLE NONE 1
P8U C18 C16 SINGLE NONE 2
P8U C18 C17 SINGLE NONE 3
P8U C16 C17 SINGLE NONE 4
P8U C16 C15 SINGLE BEGINWEDGE 5
P8U C11 N3 SINGLE NONE 6
P8U C11 C10 SINGLE NONE 7
P8U N3 C12 SINGLE NONE 8
P8U C17 C19 SINGLE BEGINDASH 9
P8U C15 O5 SINGLE NONE 10
P8U C19 C24 SINGLE NONE 11
P8U C19 C20 SINGLE NONE 12
P8U C24 C23 SINGLE NONE 13
P8U O1 C1 DOUBLE NONE 14
P8U C23 C22 SINGLE NONE 15
P8U O5 C1 SINGLE NONE 16
P8U C10 C9 SINGLE BEGINWEDGE 17
P8U C10 C13 SINGLE NONE 18
P8U C1 N1 SINGLE NONE 19
P8U C12 C13 SINGLE NONE 20
P8U C20 C21 SINGLE NONE 21
P8U C8 C9 SINGLE BEGINWEDGE 22
P8U C21 C22 SINGLE NONE 23
P8U C6 C4 SINGLE NONE 24
P8U N1 C2 SINGLE NONE 25
P8U S1 C14 SINGLE NONE 26
P8U C2 C7 SINGLE NONE 27
P8U C2 C3 SINGLE BEGINWEDGE 28
P8U N2 C8 SINGLE NONE 29
P8U N2 C7 SINGLE NONE 30
P8U C8 C14 SINGLE NONE 31
P8U C7 O4 DOUBLE NONE 32
P8U C4 C3 SINGLE NONE 33
P8U C4 C5 SINGLE NONE 34
P8U C14 O3 SINGLE BEGINDASH 35
P8U S1 O6 DOUBLE NONE 36
P8U S1 O7 SINGLE NONE 37
P8U S1 O8 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P8U MurckoScaffold S1 scaffold 'O=C(CNC(=O)OC[C@H]1C[C@@H]1C1CCCCC1)NCC[C@@H]1CCNC1=O' InChI=1S/C19H31N3O4/c23-17(20-8-6-14-7-9-21-18(14)24)11-22-19(25)26-12-15-10-16(15)13-4-2-1-3-5-13/h13-16H,1-12H2,(H,20,23)(H,21,24)(H,22,25)/t14-,15-,16-/m1/s1 NZTCUTSVJSEOAO-BZUAXINKSA-N
P8U amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
P8U cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
P8U cyclopropane F3 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
P8U peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P8U N1 S1 1
P8U C2 S1 1
P8U C8 S1 1
P8U C9 S1 1
P8U C10 S1 1
P8U C11 S1 1
P8U C16 S1 1
P8U C17 S1 1
P8U C19 S1 1
P8U C20 S1 1
P8U C21 S1 1
P8U C22 S1 1
P8U C1 S1 1
P8U C12 S1 1
P8U C13 S1 1
P8U C15 S1 1
P8U C18 S1 1
P8U C23 S1 1
P8U C24 S1 1
P8U C7 S1 1
P8U N2 S1 1
P8U N3 S1 1
P8U O1 S1 1
P8U O2 S1 1
P8U O4 S1 1
P8U O5 S1 1
P8U N2 F1 1
P8U C7 F1 1
P8U O4 F1 1
P8U C2 F1 1
P8U N3 F1 2
P8U C11 F1 2
P8U O2 F1 2
P8U C10 F1 2
P8U C19 F2 1
P8U C24 F2 1
P8U C23 F2 1
P8U C22 F2 1
P8U C21 F2 1
P8U C20 F2 1
P8U C16 F3 1
P8U C18 F3 1
P8U C17 F3 1
P8U O4 F4 1
P8U C7 F4 1
P8U C2 F4 1
P8U N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P8U
_pdbe_chem_comp_rdkit_properties.exactmw 532.269
_pdbe_chem_comp_rdkit_properties.amw 532.680
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 272.949
_pdbe_chem_comp_rdkit_properties.tpsa 174.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.119
_pdbe_chem_comp_rdkit_properties.CrippenMR 132.879
_pdbe_chem_comp_rdkit_properties.chi0v 17.832
_pdbe_chem_comp_rdkit_properties.chi1v 10.179
_pdbe_chem_comp_rdkit_properties.chi2v 4.154
_pdbe_chem_comp_rdkit_properties.chi3v 4.154
_pdbe_chem_comp_rdkit_properties.chi4v 2.367
_pdbe_chem_comp_rdkit_properties.chi0n 59.016
_pdbe_chem_comp_rdkit_properties.chi1n 29.337
_pdbe_chem_comp_rdkit_properties.chi2n 3.506
_pdbe_chem_comp_rdkit_properties.chi3n 3.506
_pdbe_chem_comp_rdkit_properties.chi4n 2.034
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.760
_pdbe_chem_comp_rdkit_properties.kappa1 6.180
_pdbe_chem_comp_rdkit_properties.kappa2 12.660
_pdbe_chem_comp_rdkit_properties.kappa3 8.390
_pdbe_chem_comp_rdkit_properties.Phi 2.173
#
_pdbe_chem_comp_external_mappings.comp_id P8U
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id P8U
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P8U N1 0.029 -1.207 -1.994 ETKDGv3 1
P8U C2 -0.779 -0.088 -2.489 ETKDGv3 2
P8U C3 -0.847 -0.124 -4.032 ETKDGv3 3
P8U C4 -1.603 1.075 -4.659 ETKDGv3 4
P8U C6 -1.886 0.799 -6.141 ETKDGv3 5
P8U C8 -4.038 0.919 -0.565 ETKDGv3 6
P8U C9 -4.147 1.791 0.720 ETKDGv3 7
P8U C10 -3.723 1.100 2.041 ETKDGv3 8
P8U C11 -4.472 -0.156 2.289 ETKDGv3 9
P8U C16 2.900 -1.737 1.364 ETKDGv3 10
P8U C17 3.388 -1.696 2.812 ETKDGv3 11
P8U C19 4.930 -1.796 2.980 ETKDGv3 12
P8U C20 5.759 -0.642 2.369 ETKDGv3 13
P8U C21 7.276 -0.914 2.465 ETKDGv3 14
P8U C22 7.668 -1.799 3.664 ETKDGv3 15
P8U C1 0.546 -1.237 -0.659 ETKDGv3 16
P8U C12 -2.279 -0.910 1.994 ETKDGv3 17
P8U C13 -2.254 0.628 2.077 ETKDGv3 18
P8U C14 -5.024 1.361 -1.679 ETKDGv3 19
P8U C15 1.623 -2.560 1.151 ETKDGv3 20
P8U C18 2.746 -0.459 2.184 ETKDGv3 21
P8U C23 6.720 -1.592 4.847 ETKDGv3 22
P8U C24 5.264 -1.953 4.486 ETKDGv3 23
P8U C5 -0.814 2.386 -4.519 ETKDGv3 24
P8U C7 -2.157 -0.171 -1.885 ETKDGv3 25
P8U N2 -2.666 0.910 -1.088 ETKDGv3 26
P8U N3 -3.646 -1.299 2.280 ETKDGv3 27
P8U O1 0.448 -0.222 0.083 ETKDGv3 28
P8U O2 -5.716 -0.214 2.478 ETKDGv3 29
P8U O3 -6.350 1.164 -1.262 ETKDGv3 30
P8U O4 -2.860 -1.199 -2.082 ETKDGv3 31
P8U O5 1.150 -2.407 -0.185 ETKDGv3 32
P8U S1 -4.831 3.075 -2.178 ETKDGv3 33
P8U H1 0.165 -2.054 -2.591 ETKDGv3 34
P8U H2 -0.283 0.856 -2.182 ETKDGv3 35
P8U H3 0.188 -0.156 -4.439 ETKDGv3 36
P8U H4 -1.342 -1.072 -4.340 ETKDGv3 37
P8U H5 -2.585 1.200 -4.154 ETKDGv3 38
P8U H6 -0.937 0.662 -6.703 ETKDGv3 39
P8U H7 -2.504 -0.118 -6.250 ETKDGv3 40
P8U H8 -2.451 1.644 -6.590 ETKDGv3 41
P8U H9 -4.316 -0.123 -0.299 ETKDGv3 42
P8U H10 -5.203 2.110 0.855 ETKDGv3 43
P8U H11 -3.554 2.723 0.598 ETKDGv3 44
P8U H12 -3.906 1.803 2.883 ETKDGv3 45
P8U H13 3.683 -1.731 0.577 ETKDGv3 46
P8U H14 2.745 -2.268 3.517 ETKDGv3 47
P8U H15 5.243 -2.734 2.469 ETKDGv3 48
P8U H16 5.527 0.301 2.911 ETKDGv3 49
P8U H17 5.507 -0.494 1.298 ETKDGv3 50
P8U H18 7.808 0.059 2.536 ETKDGv3 51
P8U H19 7.622 -1.411 1.533 ETKDGv3 52
P8U H20 8.709 -1.563 3.975 ETKDGv3 53
P8U H21 7.642 -2.869 3.362 ETKDGv3 54
P8U H22 -2.009 -1.249 0.972 ETKDGv3 55
P8U H23 -1.587 -1.364 2.736 ETKDGv3 56
P8U H24 -1.803 0.925 3.050 ETKDGv3 57
P8U H25 -1.630 1.074 1.278 ETKDGv3 58
P8U H26 -4.835 0.744 -2.587 ETKDGv3 59
P8U H27 0.817 -2.296 1.871 ETKDGv3 60
P8U H28 1.873 -3.630 1.307 ETKDGv3 61
P8U H29 1.721 -0.248 2.556 ETKDGv3 62
P8U H30 3.403 0.365 1.845 ETKDGv3 63
P8U H31 7.055 -2.214 5.705 ETKDGv3 64
P8U H32 6.770 -0.527 5.165 ETKDGv3 65
P8U H33 5.065 -3.007 4.784 ETKDGv3 66
P8U H34 4.592 -1.309 5.096 ETKDGv3 67
P8U H35 -1.352 3.213 -5.030 ETKDGv3 68
P8U H36 0.197 2.287 -4.969 ETKDGv3 69
P8U H37 -0.709 2.673 -3.453 ETKDGv3 70
P8U H38 -2.052 1.740 -0.927 ETKDGv3 71
P8U H39 -3.987 -2.284 2.339 ETKDGv3 72
P8U H40 -6.521 0.186 -1.299 ETKDGv3 73
P8U O6 -5.347 3.986 -1.100 ETKDGv3 74
P8U O7 -5.727 3.312 -3.581 ETKDGv3 75
P8U O8 -3.217 3.424 -2.489 ETKDGv3 76
P8U H41 -5.614 4.273 -3.797 ETKDGv3 77
P8U H42 -3.221 4.335 -2.877 ETKDGv3 78
#