data_P9C
#
_chem_comp.id P9C
_chem_comp.name
"3-({3-[(1S,4S,4aS,6S,7S,9S,9aR)-1,6-dimethyl-2-oxo-4-phenyldecahydro-6,9-epoxy-4a,7-methanobenzo[7]annulen-1-yl]propanoyl}amino)-2,4-dihydroxybenzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H33 N O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-01-30
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 519.586
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P9C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3G11
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9C O16 O16 O 0 1 N N N N N N 62.783 37.414 43.741 3.690 -1.220 -2.458 O16 P9C 1
P9C O19 O19 O 0 1 N N N N N N 58.986 36.706 48.280 0.795 0.529 2.291 O19 P9C 2
P9C O20 O20 O 0 1 N N N N N N 56.554 38.738 45.041 -2.251 -0.339 -0.625 O20 P9C 3
P9C O30 O30 O 0 1 N N N N N N 57.706 41.480 41.847 -5.196 -3.156 1.126 O30 P9C 4
P9C O31 O31 O 0 1 N N N N N N 55.925 37.083 42.598 -3.944 1.299 0.011 O31 P9C 5
P9C O32 O32 O 0 1 N N N N N N 53.806 36.395 41.346 -7.665 1.986 -1.746 O32 P9C 6
P9C O33 O33 O 0 1 N N N N N N 52.729 37.805 40.001 -5.637 2.697 -1.184 O33 P9C 7
P9C N28 N28 N 0 1 N N N N N N 57.840 38.902 43.196 -3.295 -1.140 1.162 N28 P9C 8
P9C C1 C1 C 0 1 N N N N N N 57.672 38.658 44.489 -2.174 -0.863 0.466 C1 P9C 9
P9C C2 C2 C 0 1 N N N N N N 58.889 38.283 45.290 -0.825 -1.203 1.045 C2 P9C 10
P9C C3 C3 C 0 1 N N N N N N 58.903 36.764 45.403 0.271 -0.787 0.062 C3 P9C 11
P9C C4 C4 C 0 1 N N S N N N 60.086 36.140 46.201 1.655 -1.011 0.709 C4 P9C 12
P9C C5 C5 C 0 1 N N N N N N 60.045 36.564 47.700 1.773 -0.035 1.865 C5 P9C 13
P9C C6 C6 C 0 1 N N N N N N 61.330 36.801 48.422 3.137 0.208 2.468 C6 P9C 14
P9C C7 C7 C 0 1 N N R N N N 62.477 35.958 47.897 4.054 0.699 1.338 C7 P9C 15
P9C C8 C8 C 0 1 N N S N N N 62.690 36.108 46.408 4.083 -0.313 0.221 C8 P9C 16
P9C C9 C9 C 0 1 N N R N N N 61.429 36.664 45.647 2.727 -0.733 -0.320 C9 P9C 17
P9C C10 C10 C 0 1 N N S N N N 61.653 36.576 44.098 2.849 -1.797 -1.411 C10 P9C 18
P9C C11 C11 C 0 1 N N N N N N 62.179 35.218 43.608 3.749 -2.981 -0.987 C11 P9C 19
P9C C12 C12 C 0 1 N N S N N N 63.556 35.220 44.316 5.105 -2.230 -0.800 C12 P9C 20
P9C C13 C13 C 0 1 N N N N N N 63.293 34.775 45.789 4.938 -1.546 0.589 C13 P9C 21
P9C C14 C14 C 0 1 N N N N N N 63.798 37.087 45.929 4.889 0.226 -0.997 C14 P9C 22
P9C C15 C15 C 0 1 N N S N N N 63.905 36.746 44.403 4.998 -1.077 -1.843 C15 P9C 23
P9C C17 C17 C 0 1 N N N N N N 65.183 37.239 43.661 6.148 -1.059 -2.852 C17 P9C 24
P9C C18 C18 C 0 1 N N N N N N 59.926 34.591 46.155 1.686 -2.431 1.268 C18 P9C 25
P9C C21 C21 C 0 1 N N N N N N 53.702 37.517 40.788 -6.454 1.796 -1.186 C21 P9C 26
P9C C22 C22 C 0 1 Y N N N N N 54.771 38.631 41.032 -6.120 0.498 -0.578 C22 P9C 27
P9C C23 C23 C 0 1 Y N N N N N 55.817 38.317 41.948 -4.860 0.298 0.005 C23 P9C 28
P9C C24 C24 C 0 1 Y N N N N N 56.808 39.275 42.237 -4.553 -0.931 0.576 C24 P9C 29
P9C C25 C25 C 0 1 Y N N N N N 56.772 40.526 41.612 -5.496 -1.956 0.567 C25 P9C 30
P9C C26 C26 C 0 1 Y N N N N N 55.733 40.831 40.691 -6.744 -1.753 -0.011 C26 P9C 31
P9C C27 C27 C 0 1 Y N N N N N 54.746 39.902 40.412 -7.060 -0.538 -0.575 C27 P9C 32
P9C C34 C34 C 0 1 Y N N N N N 64.234 37.325 49.117 4.381 3.142 0.903 C34 P9C 33
P9C C35 C35 C 0 1 Y N N N N N 64.336 34.918 49.248 2.285 2.145 0.316 C35 P9C 34
P9C C36 C36 C 0 1 Y N N N N N 65.369 37.434 49.938 3.929 4.365 0.442 C36 P9C 35
P9C C37 C37 C 0 1 Y N N N N N 65.980 36.275 50.414 2.655 4.477 -0.082 C37 P9C 36
P9C C38 C38 C 0 1 Y N N N N N 65.473 35.017 50.064 1.833 3.367 -0.145 C38 P9C 37
P9C C39 C39 C 0 1 Y N N N N N 63.717 36.066 48.773 3.561 2.032 0.835 C39 P9C 38
P9C HO30 HO30 H 0 0 N N N N N N 57.924 41.489 42.771 -5.353 -3.197 2.079 HO30 P9C 39
P9C HO31 HO31 H 0 0 N N N N N N 55.949 36.386 41.953 -3.992 1.872 0.788 HO31 P9C 40
P9C HO32 HO32 H 0 0 N N N N N N 53.076 35.844 41.089 -7.838 2.855 -2.133 HO32 P9C 41
P9C HN28 HN28 H 0 0 N N N N N N 58.772 38.822 42.842 -3.231 -1.484 2.066 HN28 P9C 42
P9C H2 H2 H 0 1 N N N N N N 59.800 38.635 44.785 -0.689 -0.671 1.987 H2 P9C 43
P9C H2A H2A H 0 1 N N N N N N 58.858 38.747 46.287 -0.766 -2.277 1.222 H2A P9C 44
P9C H3 H3 H 0 1 N N N N N N 57.974 36.467 45.912 0.193 -1.387 -0.845 H3 P9C 45
P9C H3A H3A H 0 1 N N N N N N 59.010 36.391 44.374 0.154 0.267 -0.189 H3A P9C 46
P9C H6 H6 H 0 1 N N N N N N 61.600 37.861 48.305 3.068 0.973 3.241 H6 P9C 47
P9C H6A H6A H 0 1 N N N N N N 61.172 36.521 49.474 3.531 -0.712 2.892 H6A P9C 48
P9C H7 H7 H 0 1 N N N N N N 62.186 34.901 47.989 5.067 0.820 1.733 H7 P9C 49
P9C H9 H9 H 0 1 N N N N N N 61.322 37.739 45.857 2.356 0.177 -0.879 H9 P9C 50
P9C H10 H10 H 0 1 N N N N N N 60.670 36.828 43.673 1.886 -2.114 -1.811 H10 P9C 51
P9C H11 H11 H 0 1 N N N N N N 61.541 34.374 43.908 3.444 -3.490 -0.086 H11 P9C 52
P9C H11A H11A H 0 0 N N N N N N 62.214 35.095 42.515 3.835 -3.712 -1.806 H11A P9C 53
P9C H12 H12 H 0 1 N N N N N N 64.316 34.595 43.823 5.991 -2.854 -0.900 H12 P9C 54
P9C H13 H13 H 0 1 N N N N N N 64.213 34.455 46.300 5.909 -1.238 0.990 H13 P9C 55
P9C H13A H13A H 0 0 N N N N N N 62.635 33.898 45.883 4.429 -2.196 1.297 H13A P9C 56
P9C H14 H14 H 0 1 N N N N N N 63.519 38.138 46.097 4.333 0.993 -1.533 H14 P9C 57
P9C H14A H14A H 0 0 N N N N N N 64.748 36.973 46.471 5.869 0.582 -0.685 H14A P9C 58
P9C H17 H17 H 0 1 N N N N N N 64.964 37.355 42.589 6.026 -0.211 -3.526 H17 P9C 59
P9C H17A H17A H 0 0 N N N N N N 65.498 38.207 44.078 7.096 -0.969 -2.322 H17A P9C 60
P9C H17B H17B H 0 0 N N N N N N 65.990 36.503 43.792 6.141 -1.985 -3.428 H17B P9C 61
P9C H18 H18 H 0 1 N N N N N N 59.888 34.257 45.108 1.528 -3.144 0.458 H18 P9C 62
P9C H18A H18A H 0 0 N N N N N N 60.782 34.119 46.660 2.655 -2.618 1.732 H18A P9C 63
P9C H18B H18B H 0 0 N N N N N N 58.995 34.304 46.665 0.898 -2.546 2.011 H18B P9C 64
P9C H26 H26 H 0 1 N N N N N N 55.714 41.795 40.205 -7.470 -2.553 -0.015 H26 P9C 65
P9C H27 H27 H 0 1 N N N N N N 53.955 40.148 39.719 -8.032 -0.386 -1.019 H27 P9C 66
P9C H34 H34 H 0 1 N N N N N N 63.754 38.219 48.747 5.376 3.054 1.313 H34 P9C 67
P9C H35 H35 H 0 1 N N N N N N 63.942 33.947 48.989 1.643 1.278 0.267 H35 P9C 68
P9C H36 H36 H 0 1 N N N N N N 65.764 38.405 50.197 4.571 5.232 0.491 H36 P9C 69
P9C H37 H37 H 0 1 N N N N N N 66.847 36.347 51.054 2.301 5.432 -0.442 H37 P9C 70
P9C H38 H38 H 0 1 N N N N N N 65.958 34.121 50.423 0.836 3.456 -0.551 H38 P9C 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9C O16 C10 SING N N 1
P9C O16 C15 SING N N 2
P9C C5 O19 DOUB N N 3
P9C C1 O20 DOUB N N 4
P9C C25 O30 SING N N 5
P9C O30 HO30 SING N N 6
P9C C23 O31 SING N N 7
P9C O31 HO31 SING N N 8
P9C C21 O32 SING N N 9
P9C O32 HO32 SING N N 10
P9C O33 C21 DOUB N N 11
P9C C24 N28 SING N N 12
P9C N28 C1 SING N N 13
P9C N28 HN28 SING N N 14
P9C C1 C2 SING N N 15
P9C C2 C3 SING N N 16
P9C C2 H2 SING N N 17
P9C C2 H2A SING N N 18
P9C C3 C4 SING N N 19
P9C C3 H3 SING N N 20
P9C C3 H3A SING N N 21
P9C C9 C4 SING N N 22
P9C C18 C4 SING N N 23
P9C C4 C5 SING N N 24
P9C C5 C6 SING N N 25
P9C C7 C6 SING N N 26
P9C C6 H6 SING N N 27
P9C C6 H6A SING N N 28
P9C C8 C7 SING N N 29
P9C C7 C39 SING N N 30
P9C C7 H7 SING N N 31
P9C C9 C8 SING N N 32
P9C C13 C8 SING N N 33
P9C C14 C8 SING N N 34
P9C C10 C9 SING N N 35
P9C C9 H9 SING N N 36
P9C C11 C10 SING N N 37
P9C C10 H10 SING N N 38
P9C C11 C12 SING N N 39
P9C C11 H11 SING N N 40
P9C C11 H11A SING N N 41
P9C C12 C15 SING N N 42
P9C C12 C13 SING N N 43
P9C C12 H12 SING N N 44
P9C C13 H13 SING N N 45
P9C C13 H13A SING N N 46
P9C C15 C14 SING N N 47
P9C C14 H14 SING N N 48
P9C C14 H14A SING N N 49
P9C C17 C15 SING N N 50
P9C C17 H17 SING N N 51
P9C C17 H17A SING N N 52
P9C C17 H17B SING N N 53
P9C C18 H18 SING N N 54
P9C C18 H18A SING N N 55
P9C C18 H18B SING N N 56
P9C C21 C22 SING N N 57
P9C C27 C22 DOUB Y N 58
P9C C22 C23 SING Y N 59
P9C C23 C24 DOUB Y N 60
P9C C25 C24 SING Y N 61
P9C C26 C25 DOUB Y N 62
P9C C27 C26 SING Y N 63
P9C C26 H26 SING N N 64
P9C C27 H27 SING N N 65
P9C C39 C34 DOUB Y N 66
P9C C34 C36 SING Y N 67
P9C C34 H34 SING N N 68
P9C C39 C35 SING Y N 69
P9C C35 C38 DOUB Y N 70
P9C C35 H35 SING N N 71
P9C C36 C37 DOUB Y N 72
P9C C36 H36 SING N N 73
P9C C38 C37 SING Y N 74
P9C C37 H37 SING N N 75
P9C C38 H38 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9C SMILES ACDLabs 10.04 O=C(O)c1c(O)c(c(O)cc1)NC(=O)CCC3(C(=O)CC(c2ccccc2)C46C3C5OC(C)(C4)C(C5)C6)C
P9C SMILES_CANONICAL CACTVS 3.341 C[C@]12C[C@]34C[C@H]1C[C@H](O2)[C@H]3[C@](C)(CCC(=O)Nc5c(O)ccc(C(O)=O)c5O)C(=O)C[C@@H]4c6ccccc6
P9C SMILES CACTVS 3.341 C[C]12C[C]34C[CH]1C[CH](O2)[CH]3[C](C)(CCC(=O)Nc5c(O)ccc(C(O)=O)c5O)C(=O)C[CH]4c6ccccc6
P9C SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@]12C[C@]34C[C@H]1C[C@@H]([C@H]3[C@](C(=O)C[C@@H]4c5ccccc5)(C)CCC(=O)Nc6c(ccc(c6O)C(=O)O)O)O2
P9C SMILES "OpenEye OEToolkits" 1.5.0 CC12CC34CC1CC(C3C(C(=O)CC4c5ccccc5)(C)CCC(=O)Nc6c(ccc(c6O)C(=O)O)O)O2
P9C InChI InChI 1.03 InChI=1S/C30H33NO7/c1-28(11-10-23(34)31-24-20(32)9-8-18(25(24)35)27(36)37)22(33)13-19(16-6-4-3-5-7-16)30-14-17-12-21(26(28)30)38-29(17,2)15-30/h3-9,17,19,21,26,32,35H,10-15H2,1-2H3,(H,31,34)(H,36,37)/t17-,19-,21+,26+,28-,29+,30+/m1/s1
P9C InChIKey InChI 1.03 WDRJLSQVOAFEDA-ZORPPZNDSA-N
#
_pdbx_chem_comp_identifier.comp_id P9C
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"3-({3-[(1S,4S,4aS,6S,7S,9S,9aR)-1,6-dimethyl-2-oxo-4-phenyldecahydro-6,9-epoxy-4a,7-methanobenzo[7]annulen-1-yl]propanoyl}amino)-2,4-dihydroxybenzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9C 'Create component' 2009-01-30 RCSB
P9C 'Modify aromatic_flag' 2011-06-04 RCSB
P9C 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P9C O16 O 2.596 3.685 1
P9C O19 O 0.740 -2.544 2
P9C O20 O -2.708 -2.256 3
P9C O30 O -4.002 -3.009 4
P9C O31 O -6.619 1.478 5
P9C O32 O -10.507 -0.789 6
P9C O33 O -9.217 1.467 7
P9C N28 N -4.014 -0.010 8
P9C C1 C -2.713 -0.756 9
P9C C2 C -1.417 -0.003 10
P9C C3 C -0.116 -0.750 11
P9C C4 C 1.179 0.006 12
P9C C5 C 1.700 -1.394 13
P9C C6 C 3.180 -1.658 14
P9C C7 C 4.121 -0.507 15
P9C C8 C 3.622 0.891 16
P9C C9 C 2.135 1.155 17
P9C C10 C 1.644 2.552 18
P9C C11 C 3.100 2.301 19
P9C C12 C 5.534 3.183 20
P9C C13 C 5.092 0.631 21
P9C C14 C 4.577 2.045 22
P9C C15 C 4.056 3.442 23
P9C C17 C 4.309 4.922 24
P9C C18 C 0.209 1.151 25
P9C C21 C -9.211 -0.033 26
P9C C22 C -7.907 -0.778 27
P9C C23 C -6.612 -0.021 28
P9C C24 C -5.311 -0.765 29
P9C C25 C -5.303 -2.265 30
P9C C26 C -6.600 -3.020 31
P9C C27 C -7.903 -2.278 32
P9C C34 C 6.100 -2.165 33
P9C C35 C 6.542 0.395 34
P9C C36 C 7.579 -2.419 35
P9C C37 C 8.538 -1.267 36
P9C C38 C 8.021 0.141 37
P9C C39 C 5.583 -0.756 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P9C O16 C10 SINGLE NONE 1
P9C O16 C15 SINGLE NONE 2
P9C C5 O19 DOUBLE NONE 3
P9C C1 O20 DOUBLE NONE 4
P9C C25 O30 SINGLE NONE 5
P9C C23 O31 SINGLE NONE 6
P9C C21 O32 SINGLE NONE 7
P9C O33 C21 DOUBLE NONE 8
P9C C24 N28 SINGLE NONE 9
P9C N28 C1 SINGLE NONE 10
P9C C1 C2 SINGLE NONE 11
P9C C2 C3 SINGLE NONE 12
P9C C3 C4 SINGLE NONE 13
P9C C9 C4 SINGLE NONE 14
P9C C4 C18 SINGLE BEGINDASH 15
P9C C4 C5 SINGLE NONE 16
P9C C5 C6 SINGLE NONE 17
P9C C7 C6 SINGLE NONE 18
P9C C8 C7 SINGLE NONE 19
P9C C7 C39 SINGLE BEGINWEDGE 20
P9C C9 C8 SINGLE NONE 21
P9C C8 C13 SINGLE BEGINDASH 22
P9C C14 C8 SINGLE NONE 23
P9C C10 C9 SINGLE NONE 24
P9C C11 C10 SINGLE NONE 25
P9C C11 C12 SINGLE NONE 26
P9C C12 C15 SINGLE NONE 27
P9C C12 C13 SINGLE NONE 28
P9C C15 C14 SINGLE NONE 29
P9C C15 C17 SINGLE BEGINWEDGE 30
P9C C21 C22 SINGLE NONE 31
P9C C27 C22 DOUBLE NONE 32
P9C C22 C23 SINGLE NONE 33
P9C C23 C24 DOUBLE NONE 34
P9C C25 C24 SINGLE NONE 35
P9C C26 C25 DOUBLE NONE 36
P9C C27 C26 SINGLE NONE 37
P9C C39 C34 DOUBLE NONE 38
P9C C34 C36 SINGLE NONE 39
P9C C39 C35 SINGLE NONE 40
P9C C35 C38 DOUBLE NONE 41
P9C C36 C37 DOUBLE NONE 42
P9C C38 C37 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P9C MurckoScaffold S1 scaffold 'O=C(CCC1C(=O)C[C@H](c2ccccc2)[C@@]23CC4O[C@@H](C[C@@H]4C2)[C@@H]13)Nc1ccccc1' InChI=1S/C27H29NO3/c29-22-14-21(17-7-3-1-4-8-17)27-15-18-13-23(31-24(18)16-27)26(27)20(22)11-12-25(30)28-19-9-5-2-6-10-19/h1-10,18,20-21,23-24,26H,11-16H2,(H,28,30)/t18-,20?,21-,23+,24?,26-,27+/m1/s1 NJUNASSVYVNTOS-YTOKDSJSSA-N
P9C amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
P9C cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
P9C cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
P9C phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
P9C Z57040482 F5 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
P9C Z32016974 F6 fragment CNC(=O)CCC1CCCCC1 InChI=1S/C10H19NO/c1-11-10(12)8-7-9-5-3-2-4-6-9/h9H,2-8H2,1H3,(H,11,12) NKQAGLASNCWFIR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P9C O16 S1 1
P9C O19 S1 1
P9C O20 S1 1
P9C N28 S1 1
P9C C1 S1 1
P9C C2 S1 1
P9C C3 S1 1
P9C C4 S1 1
P9C C5 S1 1
P9C C6 S1 1
P9C C7 S1 1
P9C C8 S1 1
P9C C9 S1 1
P9C C10 S1 1
P9C C11 S1 1
P9C C12 S1 1
P9C C13 S1 1
P9C C14 S1 1
P9C C15 S1 1
P9C C22 S1 1
P9C C23 S1 1
P9C C24 S1 1
P9C C25 S1 1
P9C C26 S1 1
P9C C27 S1 1
P9C C34 S1 1
P9C C35 S1 1
P9C C36 S1 1
P9C C37 S1 1
P9C C38 S1 1
P9C C39 S1 1
P9C N28 F1 1
P9C C1 F1 1
P9C O20 F1 1
P9C C2 F1 1
P9C C4 F2 1
P9C C9 F2 1
P9C C8 F2 1
P9C C7 F2 1
P9C C6 F2 1
P9C C5 F2 1
P9C C8 F2 2
P9C C9 F2 2
P9C C10 F2 2
P9C C11 F2 2
P9C C12 F2 2
P9C C13 F2 2
P9C C8 F3 1
P9C C13 F3 1
P9C C12 F3 1
P9C C15 F3 1
P9C C14 F3 1
P9C C22 F4 1
P9C C27 F4 1
P9C C26 F4 1
P9C C25 F4 1
P9C C24 F4 1
P9C C23 F4 1
P9C C34 F4 2
P9C C39 F4 2
P9C C35 F4 2
P9C C38 F4 2
P9C C37 F4 2
P9C C36 F4 2
P9C C2 F5 1
P9C C1 F5 1
P9C O20 F5 1
P9C N28 F5 1
P9C C24 F5 1
P9C C23 F5 1
P9C C22 F5 1
P9C C27 F5 1
P9C C26 F5 1
P9C C25 F5 1
P9C O30 F5 1
P9C C2 F5 2
P9C C1 F5 2
P9C O20 F5 2
P9C N28 F5 2
P9C C24 F5 2
P9C C25 F5 2
P9C C26 F5 2
P9C C27 F5 2
P9C C22 F5 2
P9C C23 F5 2
P9C O31 F5 2
P9C C24 F6 1
P9C N28 F6 1
P9C C1 F6 1
P9C O20 F6 1
P9C C2 F6 1
P9C C3 F6 1
P9C C4 F6 1
P9C C9 F6 1
P9C C8 F6 1
P9C C7 F6 1
P9C C6 F6 1
P9C C5 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P9C
_pdbe_chem_comp_rdkit_properties.exactmw 519.226
_pdbe_chem_comp_rdkit_properties.amw 519.594
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 5
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 267.247
_pdbe_chem_comp_rdkit_properties.tpsa 133.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.437
_pdbe_chem_comp_rdkit_properties.CrippenMR 135.475
_pdbe_chem_comp_rdkit_properties.chi0v 18.305
_pdbe_chem_comp_rdkit_properties.chi1v 10.330
_pdbe_chem_comp_rdkit_properties.chi2v 5.936
_pdbe_chem_comp_rdkit_properties.chi3v 5.936
_pdbe_chem_comp_rdkit_properties.chi4v 4.369
_pdbe_chem_comp_rdkit_properties.chi0n 51.305
_pdbe_chem_comp_rdkit_properties.chi1n 26.502
_pdbe_chem_comp_rdkit_properties.chi2n 5.936
_pdbe_chem_comp_rdkit_properties.chi3n 5.936
_pdbe_chem_comp_rdkit_properties.chi4n 4.369
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.390
_pdbe_chem_comp_rdkit_properties.kappa1 7.416
_pdbe_chem_comp_rdkit_properties.kappa2 8.303
_pdbe_chem_comp_rdkit_properties.kappa3 3.420
_pdbe_chem_comp_rdkit_properties.Phi 1.620
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P9C UniChem PDBe P9C
P9C UniChem ZINC ZINC000058549853
P9C UniChem PubChem 25195350
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P9C O16 -1.616 0.043 -2.800 ETKDGv3 1
P9C O19 -0.589 0.867 3.139 ETKDGv3 2
P9C O20 3.740 -0.921 1.908 ETKDGv3 3
P9C O30 4.616 -0.091 -2.343 ETKDGv3 4
P9C O31 6.496 0.404 2.132 ETKDGv3 5
P9C O32 8.803 -0.742 2.655 ETKDGv3 6
P9C O33 9.972 -1.614 0.895 ETKDGv3 7
P9C N28 4.316 0.747 0.369 ETKDGv3 8
P9C C1 3.434 0.163 1.339 ETKDGv3 9
P9C C2 2.110 0.803 1.631 ETKDGv3 10
P9C C3 1.069 0.365 0.583 ETKDGv3 11
P9C C4 -0.382 0.939 0.754 ETKDGv3 12
P9C C5 -0.970 0.421 2.067 ETKDGv3 13
P9C C6 -2.059 -0.618 2.060 ETKDGv3 14
P9C C7 -3.255 -0.088 1.251 ETKDGv3 15
P9C C8 -2.853 0.315 -0.213 ETKDGv3 16
P9C C9 -1.271 0.397 -0.441 ETKDGv3 17
P9C C10 -1.003 0.946 -1.905 ETKDGv3 18
P9C C11 -1.751 2.236 -2.198 ETKDGv3 19
P9C C12 -3.171 1.722 -2.124 ETKDGv3 20
P9C C13 -3.540 1.626 -0.641 ETKDGv3 21
P9C C14 -3.386 -0.593 -1.345 ETKDGv3 22
P9C C15 -3.004 0.246 -2.578 ETKDGv3 23
P9C C17 -3.815 -0.109 -3.825 ETKDGv3 24
P9C C18 -0.329 2.483 0.794 ETKDGv3 25
P9C C21 8.910 -1.072 1.307 ETKDGv3 26
P9C C22 7.791 -0.799 0.368 ETKDGv3 27
P9C C23 6.558 -0.084 0.823 ETKDGv3 28
P9C C24 5.532 0.108 -0.041 ETKDGv3 29
P9C C25 5.664 -0.324 -1.452 ETKDGv3 30
P9C C26 6.779 -0.939 -1.862 ETKDGv3 31
P9C C27 7.879 -1.194 -0.916 ETKDGv3 32
P9C C34 -5.681 -0.544 1.569 ETKDGv3 33
P9C C35 -4.291 -2.493 1.085 ETKDGv3 34
P9C C36 -6.850 -1.446 1.614 ETKDGv3 35
P9C C37 -6.695 -2.757 1.404 ETKDGv3 36
P9C C38 -5.355 -3.305 1.122 ETKDGv3 37
P9C C39 -4.447 -1.032 1.333 ETKDGv3 38
P9C HO30 4.667 -0.374 -3.315 ETKDGv3 39
P9C HO31 5.738 0.980 2.475 ETKDGv3 40
P9C HO32 9.562 -0.929 3.299 ETKDGv3 41
P9C HN28 3.955 1.534 -0.217 ETKDGv3 42
P9C H2 1.794 0.505 2.651 ETKDGv3 43
P9C H2A 2.249 1.903 1.613 ETKDGv3 44
P9C H3 1.022 -0.748 0.600 ETKDGv3 45
P9C H3A 1.461 0.655 -0.414 ETKDGv3 46
P9C H6 -1.654 -1.551 1.617 ETKDGv3 47
P9C H6A -2.379 -0.842 3.101 ETKDGv3 48
P9C H7 -3.543 0.849 1.784 ETKDGv3 49
P9C H9 -0.962 -0.672 -0.513 ETKDGv3 50
P9C H10 0.076 1.042 -2.140 ETKDGv3 51
P9C H11 -1.525 2.574 -3.234 ETKDGv3 52
P9C H11A -1.541 3.075 -1.508 ETKDGv3 53
P9C H12 -3.890 2.331 -2.716 ETKDGv3 54
P9C H13 -3.235 2.510 -0.051 ETKDGv3 55
P9C H13A -4.647 1.545 -0.537 ETKDGv3 56
P9C H14 -4.491 -0.727 -1.294 ETKDGv3 57
P9C H14A -2.904 -1.595 -1.359 ETKDGv3 58
P9C H17 -3.665 -1.178 -4.084 ETKDGv3 59
P9C H17A -3.483 0.516 -4.681 ETKDGv3 60
P9C H17B -4.896 0.071 -3.647 ETKDGv3 61
P9C H18 0.208 2.882 -0.091 ETKDGv3 62
P9C H18A 0.209 2.846 1.694 ETKDGv3 63
P9C H18B -1.338 2.923 0.860 ETKDGv3 64
P9C H26 6.882 -1.262 -2.891 ETKDGv3 65
P9C H27 8.757 -1.712 -1.285 ETKDGv3 66
P9C H34 -5.839 0.516 1.725 ETKDGv3 67
P9C H35 -3.321 -2.913 0.854 ETKDGv3 68
P9C H36 -7.834 -1.041 1.815 ETKDGv3 69
P9C H37 -7.552 -3.418 1.435 ETKDGv3 70
P9C H38 -5.236 -4.365 0.936 ETKDGv3 71
#