data_P9E
#
_chem_comp.id P9E
_chem_comp.name 2-sulfanylidene-3~{H}-1,3-benzoxazole-5-sulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H6 N2 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-04-18
_chem_comp.pdbx_modified_date 2020-06-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 230.264
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P9E
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YQT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9E C1 C1 C 0 1 Y N N N N N -5.570 2.458 16.136 -1.357 -0.212 0.055 C1 P9E 1
P9E C2 C2 C 0 1 Y N N N N N -4.257 2.667 15.732 -0.361 0.745 0.063 C2 P9E 2
P9E C3 C3 C 0 1 Y N N N N N -3.963 3.897 15.157 0.970 0.357 0.031 C3 P9E 3
P9E C4 C4 C 0 1 Y N N N N N -4.957 4.843 15.006 1.300 -0.998 -0.010 C4 P9E 4
P9E C5 C5 C 0 1 Y N N N N N -6.270 4.658 15.389 0.294 -1.951 -0.018 C5 P9E 5
P9E C6 C6 C 0 1 Y N N N N N -6.554 3.432 15.965 -1.029 -1.557 0.021 C6 P9E 6
P9E C7 C7 C 0 1 N N N N N N -3.076 5.648 14.252 3.171 0.158 -0.011 C7 P9E 7
P9E N1 N1 N 0 1 N N N N N N -2.769 4.444 14.656 2.172 1.061 0.029 N1 P9E 8
P9E S1 S1 S 0 1 N N N N N N -2.070 6.846 13.572 4.842 0.531 -0.029 S1 P9E 9
P9E O1 O1 O 0 1 N N N N N N -4.393 5.967 14.426 2.653 -1.081 -0.035 O1 P9E 10
P9E S2 S2 S 0 1 N N N N N N -6.013 0.936 16.908 -3.048 0.279 0.097 S2 P9E 11
P9E O2 O2 O 0 1 N N N N N N -7.442 0.843 16.802 -3.773 -0.823 0.625 O2 P9E 12
P9E O3 O3 O 0 1 N N N N N N -5.447 0.962 18.226 -3.075 1.577 0.675 O3 P9E 13
P9E N2 N2 N 0 1 N N N N N N -5.385 -0.321 16.101 -3.546 0.457 -1.473 N2 P9E 14
P9E H1 H1 H 0 1 N N N N N N -3.500 1.908 15.859 -0.618 1.794 0.094 H1 P9E 15
P9E H2 H2 H 0 1 N N N N N N -7.024 5.418 15.249 0.544 -3.001 -0.049 H2 P9E 16
P9E H3 H3 H 0 1 N N N N N N -7.563 3.224 16.290 -1.812 -2.300 0.015 H3 P9E 17
P9E H4 H4 H 0 1 N N N N N N -1.872 4.004 14.617 2.272 2.026 0.052 H4 P9E 18
P9E H5 H5 H 0 1 N N N N N N -5.647 -1.173 16.554 -2.925 0.292 -2.200 H5 P9E 19
P9E H6 H6 H 0 1 N N N N N N -5.732 -0.322 15.163 -4.457 0.726 -1.665 H6 P9E 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9E S1 C7 DOUB N N 1
P9E C7 O1 SING N N 2
P9E C7 N1 SING N N 3
P9E O1 C4 SING N N 4
P9E N1 C3 SING N N 5
P9E C4 C3 DOUB Y N 6
P9E C4 C5 SING Y N 7
P9E C3 C2 SING Y N 8
P9E C5 C6 DOUB Y N 9
P9E C2 C1 DOUB Y N 10
P9E C6 C1 SING Y N 11
P9E N2 S2 SING N N 12
P9E C1 S2 SING N N 13
P9E O2 S2 DOUB N N 14
P9E S2 O3 DOUB N N 15
P9E C2 H1 SING N N 16
P9E C5 H2 SING N N 17
P9E C6 H3 SING N N 18
P9E N1 H4 SING N N 19
P9E N2 H5 SING N N 20
P9E N2 H6 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9E InChI InChI 1.03 InChI=1S/C7H6N2O3S2/c8-14(10,11)4-1-2-6-5(3-4)9-7(13)12-6/h1-3H,(H,9,13)(H2,8,10,11)
P9E InChIKey InChI 1.03 SCMGHROIQYCXRC-UHFFFAOYSA-N
P9E SMILES_CANONICAL CACTVS 3.385 N[S](=O)(=O)c1ccc2OC(=S)Nc2c1
P9E SMILES CACTVS 3.385 N[S](=O)(=O)c1ccc2OC(=S)Nc2c1
P9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1S(=O)(=O)N)NC(=S)O2
P9E SMILES "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1S(=O)(=O)N)NC(=S)O2
#
_pdbx_chem_comp_identifier.comp_id P9E
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-sulfanylidene-3~{H}-1,3-benzoxazole-5-sulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9E 'Create component' 2020-04-18 PDBE
P9E 'Initial release' 2020-07-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
P9E C1 C 6.404 -0.090 1
P9E C2 C 7.702 0.660 2
P9E C3 C 9.002 -0.090 3
P9E C4 C 9.002 -1.590 4
P9E C5 C 7.702 -2.340 5
P9E C6 C 6.404 -1.590 6
P9E C7 C 11.296 -0.840 7
P9E N1 N 10.421 0.367 8
P9E S1 S 12.796 -0.840 9
P9E O1 O 10.421 -2.047 10
P9E S2 S 5.104 0.660 11
P9E O2 O 5.854 1.959 12
P9E O3 O 3.805 1.410 13
P9E N2 N 4.354 -0.639 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
P9E S1 C7 DOUBLE NONE 1
P9E C7 O1 SINGLE NONE 2
P9E C7 N1 SINGLE NONE 3
P9E O1 C4 SINGLE NONE 4
P9E N1 C3 SINGLE NONE 5
P9E C4 C3 DOUBLE NONE 6
P9E C4 C5 SINGLE NONE 7
P9E C3 C2 SINGLE NONE 8
P9E C5 C6 DOUBLE NONE 9
P9E C2 C1 DOUBLE NONE 10
P9E C6 C1 SINGLE NONE 11
P9E N2 S2 SINGLE NONE 12
P9E C1 S2 SINGLE NONE 13
P9E O2 S2 DOUBLE NONE 14
P9E S2 O3 DOUBLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
P9E MurckoScaffold S1 scaffold 'S=c1[nH]c2ccccc2o1' InChI=1S/C7H5NOS/c10-7-8-5-3-1-2-4-6(5)9-7/h1-4H,(H,8,10) FLFWJIBUZQARMD-UHFFFAOYSA-N
P9E benzoxazole F1 fragment c1ccc2ocnc2c1 InChI=1S/C7H5NO/c1-2-4-7-6(3-1)8-5-9-7/h1-5H BCMCBBGGLRIHSE-UHFFFAOYSA-N
P9E oxazole F2 fragment c1cocn1 InChI=1S/C3H3NO/c1-2-5-3-4-1/h1-3H ZCQWOFVYLHDMMC-UHFFFAOYSA-N
P9E phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
P9E C1 S1 1
P9E C2 S1 1
P9E C3 S1 1
P9E C4 S1 1
P9E C5 S1 1
P9E C6 S1 1
P9E C7 S1 1
P9E N1 S1 1
P9E S1 S1 1
P9E O1 S1 1
P9E C4 F1 1
P9E O1 F1 1
P9E C7 F1 1
P9E N1 F1 1
P9E C3 F1 1
P9E C2 F1 1
P9E C1 F1 1
P9E C6 F1 1
P9E C5 F1 1
P9E C4 F2 1
P9E C3 F2 1
P9E N1 F2 1
P9E C7 F2 1
P9E O1 F2 1
P9E C1 F3 1
P9E C2 F3 1
P9E C3 F3 1
P9E C4 F3 1
P9E C5 F3 1
P9E C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id P9E
_pdbe_chem_comp_rdkit_properties.exactmw 229.982
_pdbe_chem_comp_rdkit_properties.amw 230.270
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 93.190
_pdbe_chem_comp_rdkit_properties.tpsa 89.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.601
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.136
_pdbe_chem_comp_rdkit_properties.chi0v 8.069
_pdbe_chem_comp_rdkit_properties.chi1v 5.128
_pdbe_chem_comp_rdkit_properties.chi2v 2.282
_pdbe_chem_comp_rdkit_properties.chi3v 2.282
_pdbe_chem_comp_rdkit_properties.chi4v 1.432
_pdbe_chem_comp_rdkit_properties.chi0n 12.436
_pdbe_chem_comp_rdkit_properties.chi1n 6.121
_pdbe_chem_comp_rdkit_properties.chi2n 1.387
_pdbe_chem_comp_rdkit_properties.chi3n 1.387
_pdbe_chem_comp_rdkit_properties.chi4n 0.851
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.180
_pdbe_chem_comp_rdkit_properties.kappa1 4.559
_pdbe_chem_comp_rdkit_properties.kappa2 2.906
_pdbe_chem_comp_rdkit_properties.kappa3 1.565
_pdbe_chem_comp_rdkit_properties.Phi 0.947
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
P9E UniChem PDBe P9E
P9E UniChem ZINC ZINC000034925135
P9E UniChem eMolecules 27332125
P9E UniChem SureChEMBL SCHEMBL3573965
P9E UniChem PubChem 12268831
P9E UniChem Mcule MCULE-1231690468
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
P9E C1 -0.923 -0.358 -0.069 ETKDGv3 1
P9E C2 -0.078 0.631 -0.425 ETKDGv3 2
P9E C3 1.367 0.411 -0.252 ETKDGv3 3
P9E C4 1.839 -0.719 0.246 ETKDGv3 4
P9E C5 0.941 -1.811 0.649 ETKDGv3 5
P9E C6 -0.384 -1.635 0.498 ETKDGv3 6
P9E C7 3.568 0.561 -0.185 ETKDGv3 7
P9E N1 2.418 1.313 -0.564 ETKDGv3 8
P9E S1 5.102 1.105 -0.321 ETKDGv3 9
P9E O1 3.226 -0.692 0.316 ETKDGv3 10
P9E S2 -2.659 -0.137 -0.245 ETKDGv3 11
P9E O2 -3.349 -1.472 -0.230 ETKDGv3 12
P9E O3 -2.952 0.543 -1.554 ETKDGv3 13
P9E N2 -3.252 0.829 1.060 ETKDGv3 14
P9E H1 -0.443 1.567 -0.828 ETKDGv3 15
P9E H2 1.337 -2.731 1.059 ETKDGv3 16
P9E H3 -1.062 -2.425 0.794 ETKDGv3 17
P9E H4 2.362 2.275 -0.966 ETKDGv3 18
P9E H5 -2.789 1.762 0.985 ETKDGv3 19
P9E H6 -4.271 0.983 0.888 ETKDGv3 20
#