data_PB0
#
_chem_comp.id PB0
_chem_comp.name
(2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(2R,4R)-4-propoxypyrrolidin-2-yl]propan-2-yl}-4-phenylbutanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H50 F2 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-03-21
_chem_comp.pdbx_modified_date 2011-08-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 656.803
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PB0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3R2F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PB0 C1 C1 C 0 1 Y N N N N N 35.836 21.070 65.831 -1.721 7.029 -1.011 C1 PB0 1
PB0 C2 C2 C 0 1 Y N N N N N 35.277 21.781 66.895 -1.272 6.448 -2.182 C2 PB0 2
PB0 C3 C3 C 0 1 Y N N N N N 36.769 20.056 66.070 -2.394 6.268 -0.075 C3 PB0 3
PB0 C4 C4 C 0 1 Y N N N N N 35.665 21.468 68.199 -1.497 5.104 -2.417 C4 PB0 4
PB0 C5 C5 C 0 1 Y N N N N N 37.160 19.745 67.374 -2.619 4.924 -0.309 C5 PB0 5
PB0 C6 C6 C 0 1 Y N N N N N 33.840 15.314 73.981 0.178 -2.847 -2.683 C6 PB0 6
PB0 C7 C7 C 0 1 Y N N N N N 35.721 15.218 75.459 1.247 -3.827 -0.778 C7 PB0 7
PB0 C8 C8 C 0 1 Y N N N N N 35.516 13.588 73.701 -0.868 -4.671 -1.530 C8 PB0 8
PB0 C9 C9 C 0 1 Y N N N N N 36.602 20.459 68.434 -2.170 4.342 -1.480 C9 PB0 9
PB0 C10 C10 C 0 1 Y N N N N N 34.533 15.834 75.066 1.236 -2.891 -1.795 C10 PB0 10
PB0 C11 C11 C 0 1 Y N N N N N 34.328 14.206 73.309 -0.875 -3.737 -2.552 C11 PB0 11
PB0 C12 C12 C 0 1 Y N N N N N 36.223 14.101 74.788 0.198 -4.722 -0.649 C12 PB0 12
PB0 C13 C13 C 0 1 N N N N N N 38.472 18.579 72.458 -2.805 0.271 0.647 C13 PB0 13
PB0 C14 C14 C 0 1 N N N N N N 40.798 17.869 70.658 -3.253 -1.727 2.840 C14 PB0 14
PB0 C15 C15 C 0 1 N N N N N N 34.825 18.958 72.772 -0.292 -0.222 -1.012 C15 PB0 15
PB0 C16 C16 C 0 1 N N N N N N 38.413 16.260 71.970 -4.960 -0.391 -0.214 C16 PB0 16
PB0 C17 C17 C 0 1 N N N N N N 31.562 20.240 74.237 5.749 0.542 -0.579 C17 PB0 17
PB0 C18 C18 C 0 1 N N N N N N 37.015 16.852 72.194 -3.846 -0.513 -1.275 C18 PB0 18
PB0 C19 C19 C 0 1 N N N N N N 31.421 22.473 75.088 5.657 -0.700 1.532 C19 PB0 19
PB0 C20 C20 C 0 1 N N R N N N 30.571 21.400 74.414 6.627 0.037 0.589 C20 PB0 20
PB0 C21 C21 C 0 1 N N R N N N 32.808 20.633 75.048 4.518 -0.396 -0.518 C21 PB0 21
PB0 C22 C22 C 0 1 N N R N N N 39.295 17.321 72.622 -4.142 -0.279 1.093 C22 PB0 22
PB0 C23 C23 C 0 1 N N N N N N 42.190 17.873 70.078 -2.985 -3.095 3.411 C23 PB0 23
PB0 C24 C24 C 0 1 N N N N N N 26.910 20.454 76.646 10.412 1.754 3.173 C24 PB0 24
PB0 C25 C25 C 0 1 N N N N N N 40.303 16.053 76.185 -6.657 0.920 3.745 C25 PB0 25
PB0 C26 C26 C 0 1 N N N N N N 40.963 14.938 74.137 -7.116 -0.133 1.526 C26 PB0 26
PB0 C27 C27 C 0 1 N N N N N N 37.015 20.138 69.845 -2.416 2.878 -1.736 C27 PB0 27
PB0 C28 C28 C 0 1 N N N N N N 34.028 17.047 75.815 2.378 -1.919 -1.936 C28 PB0 28
PB0 C29 C29 C 0 1 N N N N N N 39.385 16.949 74.109 -4.819 0.687 2.068 C29 PB0 29
PB0 C30 C30 C 0 1 N N N N N N 27.673 19.516 75.720 9.056 2.081 2.545 C30 PB0 30
PB0 C31 C31 C 0 1 N N N N N N 35.808 19.560 70.569 -1.247 2.060 -1.184 C31 PB0 31
PB0 C32 C32 C 0 1 N N N N N N 28.431 20.349 74.676 8.501 0.835 1.852 C32 PB0 32
PB0 C33 C33 C 0 1 N N S N N N 36.104 19.286 72.038 -1.497 0.573 -1.444 C33 PB0 33
PB0 C34 C34 C 0 1 N N R N N N 33.466 19.457 75.788 3.299 0.270 -1.159 C34 PB0 34
PB0 C35 C35 C 0 1 N N N N N N 40.639 16.306 74.710 -6.080 0.034 2.639 C35 PB0 35
PB0 C36 C36 C 0 1 N N S N N N 33.745 18.249 74.896 2.101 -0.679 -1.084 C36 PB0 36
PB0 N37 N37 N 0 1 N N N N N N 32.285 21.666 76.001 4.306 -0.586 0.940 N37 PB0 37
PB0 N38 N38 N 0 1 N N N N N N 37.180 18.302 72.225 -2.670 0.134 -0.683 N38 PB0 38
PB0 N39 N39 N 0 1 N N N N N N 40.582 17.398 71.912 -3.974 -1.597 1.709 N39 PB0 39
PB0 N40 N40 N 0 1 N N N N N N 34.908 18.579 74.065 0.906 0.003 -1.588 N40 PB0 40
PB0 O41 O41 O 0 1 N N N N N N 38.949 19.694 72.545 -1.977 0.767 1.382 O41 PB0 41
PB0 O42 O42 O 0 1 N N N N N N 39.933 18.309 69.926 -2.818 -0.741 3.398 O42 PB0 42
PB0 O43 O43 O 0 1 N N N N N N 33.731 19.058 72.221 -0.400 -1.064 -0.146 O43 PB0 43
PB0 O44 O44 O 0 1 N N N N N N 32.648 19.037 76.886 3.583 0.571 -2.526 O44 PB0 44
PB0 O45 O45 O 0 1 N N N N N N 29.496 21.070 75.308 7.234 1.139 1.266 O45 PB0 45
PB0 F46 F46 F 0 1 N N N N N N 33.637 13.731 72.270 -1.910 -3.693 -3.420 F46 PB0 46
PB0 F47 F47 F 0 1 N N N N N N 37.377 13.536 75.204 0.215 -5.644 0.339 F47 PB0 47
PB0 H1 H1 H 0 1 N N N N N N 35.546 21.305 64.817 -1.541 8.078 -0.826 H1 PB0 48
PB0 H2 H2 H 0 1 N N N N N N 34.554 22.562 66.712 -0.746 7.043 -2.914 H2 PB0 49
PB0 H3 H3 H 0 1 N N N N N N 37.190 19.509 65.239 -2.744 6.722 0.840 H3 PB0 50
PB0 H4 H4 H 0 1 N N N N N N 35.238 22.009 69.031 -1.147 4.649 -3.332 H4 PB0 51
PB0 H5 H5 H 0 1 N N N N N N 37.883 18.964 67.559 -3.145 4.329 0.423 H5 PB0 52
PB0 H6 H6 H 0 1 N N N N N N 32.918 15.775 73.660 0.170 -2.115 -3.478 H6 PB0 53
PB0 H7 H7 H 0 1 N N N N N N 36.266 15.615 76.303 2.074 -3.861 -0.085 H7 PB0 54
PB0 H8 H8 H 0 1 N N N N N N 35.883 12.723 73.169 -1.686 -5.368 -1.429 H8 PB0 55
PB0 H16 H16 H 0 1 N N N N N N 38.529 15.273 72.442 -5.559 0.505 -0.377 H16 PB0 56
PB0 H16A H16A H 0 0 N N N N N N 38.643 16.125 70.903 -5.589 -1.282 -0.204 H16A PB0 57
PB0 H17 H17 H 0 1 N N N N N N 31.133 19.299 74.612 5.452 1.579 -0.418 H17 PB0 58
PB0 H17A H17A H 0 0 N N N N N N 31.815 20.101 73.175 6.271 0.433 -1.529 H17A PB0 59
PB0 H18 H18 H 0 1 N N N N N N 36.338 16.559 71.378 -3.635 -1.562 -1.482 H18 PB0 60
PB0 H18A H18A H 0 0 N N N N N N 36.592 16.492 73.144 -4.139 0.001 -2.190 H18A PB0 61
PB0 H19 H19 H 0 1 N N N N N N 32.014 23.045 74.360 5.941 -1.749 1.610 H19 PB0 62
PB0 H19A H19A H 0 0 N N N N N N 30.805 23.199 75.639 5.670 -0.237 2.518 H19A PB0 63
PB0 H20 H20 H 0 1 N N N N N N 30.112 21.685 73.456 7.390 -0.648 0.220 H20 PB0 64
PB0 H21 H21 H 0 1 N N N N N N 33.615 20.999 74.397 4.735 -1.347 -1.005 H21 PB0 65
PB0 H23 H23 H 0 1 N N N N N N 42.163 18.290 69.060 -2.017 -3.452 3.061 H23 PB0 66
PB0 H23A H23A H 0 0 N N N N N N 42.848 18.489 70.709 -2.980 -3.040 4.499 H23A PB0 67
PB0 H23B H23B H 0 0 N N N N N N 42.575 16.843 70.042 -3.765 -3.784 3.086 H23B PB0 68
PB0 H24 H24 H 0 1 N N N N N N 26.364 19.864 77.397 10.807 2.642 3.667 H24 PB0 69
PB0 H24A H24A H 0 0 N N N N N N 27.619 21.126 77.152 10.291 0.955 3.904 H24A PB0 70
PB0 H24B H24B H 0 0 N N N N N N 26.196 21.049 76.058 11.105 1.433 2.395 H24B PB0 71
PB0 H25 H25 H 0 1 N N N N N N 40.055 17.007 76.674 -7.555 0.455 4.152 H25 PB0 72
PB0 H25A H25A H 0 0 N N N N N N 39.442 15.371 76.253 -5.918 1.039 4.537 H25A PB0 73
PB0 H25B H25B H 0 0 N N N N N N 41.171 15.599 76.686 -6.909 1.897 3.333 H25B PB0 74
PB0 H26 H26 H 0 1 N N N N N N 41.217 15.037 73.071 -7.223 0.807 0.985 H26 PB0 75
PB0 H26A H26A H 0 0 N N N N N N 41.818 14.507 74.679 -6.789 -0.913 0.839 H26A PB0 76
PB0 H26B H26B H 0 0 N N N N N N 40.089 14.279 74.246 -8.076 -0.412 1.962 H26B PB0 77
PB0 H27 H27 H 0 1 N N N N N N 37.835 19.405 69.839 -3.339 2.572 -1.242 H27 PB0 78
PB0 H27A H27A H 0 0 N N N N N N 37.356 21.052 70.354 -2.506 2.706 -2.809 H27A PB0 79
PB0 H28 H28 H 0 1 N N N N N N 33.092 16.773 76.324 3.301 -2.391 -1.600 H28 PB0 80
PB0 H28A H28A H 0 0 N N N N N N 34.794 17.345 76.546 2.480 -1.626 -2.981 H28A PB0 81
PB0 H29 H29 H 0 1 N N N N N N 39.247 17.893 74.657 -4.133 0.924 2.881 H29 PB0 82
PB0 H29A H29A H 0 0 N N N N N N 38.573 16.227 74.281 -5.090 1.602 1.543 H29A PB0 83
PB0 H30 H30 H 0 1 N N N N N N 28.388 18.919 76.306 8.363 2.402 3.323 H30 PB0 84
PB0 H30A H30A H 0 0 N N N N N N 26.966 18.843 75.213 9.177 2.880 1.814 H30A PB0 85
PB0 H31 H31 H 0 1 N N N N N N 34.980 20.282 70.505 -0.325 2.365 -1.679 H31 PB0 86
PB0 H31A H31A H 0 0 N N N N N N 35.526 18.614 70.084 -1.158 2.231 -0.112 H31A PB0 87
PB0 H32 H32 H 0 1 N N N N N N 28.849 19.680 73.910 9.194 0.513 1.074 H32 PB0 88
PB0 H32A H32A H 0 0 N N N N N N 27.738 21.062 74.205 8.380 0.036 2.583 H32A PB0 89
PB0 H33 H33 H 0 1 N N N N N N 36.505 20.203 72.494 -1.674 0.415 -2.508 H33 PB0 90
PB0 H34 H34 H 0 1 N N N N N N 34.436 19.836 76.143 3.066 1.192 -0.625 H34 PB0 91
PB0 H35 H35 H 0 1 N N N N N N 41.490 16.974 74.512 -5.828 -0.944 3.051 H35 PB0 92
PB0 H36 H36 H 0 1 N N N N N N 32.898 17.998 74.240 1.938 -0.978 -0.049 H36 PB0 93
PB0 HN37 HN37 H 0 0 N N N N N N 33.015 22.209 76.416 3.761 -1.415 1.121 HN37 PB0 94
PB0 HN39 HN39 H 0 0 N N N N N N 41.385 17.067 72.408 -4.383 -2.378 1.303 HN39 PB0 95
PB0 HN40 HN40 H 0 0 N N N N N N 35.816 18.520 74.481 0.976 0.615 -2.337 HN40 PB0 96
PB0 HO44 HO44 H 0 0 N N N N N N 33.066 18.311 77.333 3.800 -0.204 -3.063 HO44 PB0 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PB0 C1 C3 DOUB Y N 1
PB0 C1 C2 SING Y N 2
PB0 C1 H1 SING N N 3
PB0 C2 C4 DOUB Y N 4
PB0 C2 H2 SING N N 5
PB0 C3 C5 SING Y N 6
PB0 C3 H3 SING N N 7
PB0 C4 C9 SING Y N 8
PB0 C4 H4 SING N N 9
PB0 C5 C9 DOUB Y N 10
PB0 C5 H5 SING N N 11
PB0 C11 C6 DOUB Y N 12
PB0 C6 C10 SING Y N 13
PB0 C6 H6 SING N N 14
PB0 C12 C7 SING Y N 15
PB0 C10 C7 DOUB Y N 16
PB0 C7 H7 SING N N 17
PB0 C11 C8 SING Y N 18
PB0 C8 C12 DOUB Y N 19
PB0 C8 H8 SING N N 20
PB0 C9 C27 SING N N 21
PB0 C10 C28 SING N N 22
PB0 F46 C11 SING N N 23
PB0 C12 F47 SING N N 24
PB0 N38 C13 SING N N 25
PB0 C13 O41 DOUB N N 26
PB0 C13 C22 SING N N 27
PB0 O42 C14 DOUB N N 28
PB0 C23 C14 SING N N 29
PB0 C14 N39 SING N N 30
PB0 C33 C15 SING N N 31
PB0 O43 C15 DOUB N N 32
PB0 C15 N40 SING N N 33
PB0 C16 C18 SING N N 34
PB0 C16 C22 SING N N 35
PB0 C16 H16 SING N N 36
PB0 C16 H16A SING N N 37
PB0 C17 C20 SING N N 38
PB0 C17 C21 SING N N 39
PB0 C17 H17 SING N N 40
PB0 C17 H17A SING N N 41
PB0 C18 N38 SING N N 42
PB0 C18 H18 SING N N 43
PB0 C18 H18A SING N N 44
PB0 C20 C19 SING N N 45
PB0 C19 N37 SING N N 46
PB0 C19 H19 SING N N 47
PB0 C19 H19A SING N N 48
PB0 C20 O45 SING N N 49
PB0 C20 H20 SING N N 50
PB0 C21 C34 SING N N 51
PB0 C21 N37 SING N N 52
PB0 C21 H21 SING N N 53
PB0 N39 C22 SING N N 54
PB0 C22 C29 SING N N 55
PB0 C23 H23 SING N N 56
PB0 C23 H23A SING N N 57
PB0 C23 H23B SING N N 58
PB0 C30 C24 SING N N 59
PB0 C24 H24 SING N N 60
PB0 C24 H24A SING N N 61
PB0 C24 H24B SING N N 62
PB0 C35 C25 SING N N 63
PB0 C25 H25 SING N N 64
PB0 C25 H25A SING N N 65
PB0 C25 H25B SING N N 66
PB0 C26 C35 SING N N 67
PB0 C26 H26 SING N N 68
PB0 C26 H26A SING N N 69
PB0 C26 H26B SING N N 70
PB0 C27 C31 SING N N 71
PB0 C27 H27 SING N N 72
PB0 C27 H27A SING N N 73
PB0 C36 C28 SING N N 74
PB0 C28 H28 SING N N 75
PB0 C28 H28A SING N N 76
PB0 C29 C35 SING N N 77
PB0 C29 H29 SING N N 78
PB0 C29 H29A SING N N 79
PB0 C32 C30 SING N N 80
PB0 C30 H30 SING N N 81
PB0 C30 H30A SING N N 82
PB0 C31 C33 SING N N 83
PB0 C31 H31 SING N N 84
PB0 C31 H31A SING N N 85
PB0 C32 O45 SING N N 86
PB0 C32 H32 SING N N 87
PB0 C32 H32A SING N N 88
PB0 C33 N38 SING N N 89
PB0 C33 H33 SING N N 90
PB0 C36 C34 SING N N 91
PB0 C34 O44 SING N N 92
PB0 C34 H34 SING N N 93
PB0 C35 H35 SING N N 94
PB0 N40 C36 SING N N 95
PB0 C36 H36 SING N N 96
PB0 N37 HN37 SING N N 97
PB0 N39 HN39 SING N N 98
PB0 N40 HN40 SING N N 99
PB0 O44 HO44 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PB0 SMILES ACDLabs 12.01 Fc1cc(cc(F)c1)CC(NC(=O)C(N2C(=O)C(NC(=O)C)(CC2)CC(C)C)CCc3ccccc3)C(O)C4NCC(OCCC)C4
PB0 SMILES_CANONICAL CACTVS 3.370 CCCO[C@H]1CN[C@H](C1)[C@@H](O)[C@H](Cc2cc(F)cc(F)c2)NC(=O)[C@H](CCc3ccccc3)N4CC[C@@](CC(C)C)(NC(C)=O)C4=O
PB0 SMILES CACTVS 3.370 CCCO[CH]1CN[CH](C1)[CH](O)[CH](Cc2cc(F)cc(F)c2)NC(=O)[CH](CCc3ccccc3)N4CC[C](CC(C)C)(NC(C)=O)C4=O
PB0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CCCO[C@@H]1C[C@@H](NC1)[C@H]([C@H](Cc2cc(cc(c2)F)F)NC(=O)[C@H](CCc3ccccc3)N4CC[C@@](C4=O)(CC(C)C)NC(=O)C)O
PB0 SMILES "OpenEye OEToolkits" 1.7.0 CCCOC1CC(NC1)C(C(Cc2cc(cc(c2)F)F)NC(=O)C(CCc3ccccc3)N4CCC(C4=O)(CC(C)C)NC(=O)C)O
PB0 InChI InChI 1.03 InChI=1S/C36H50F2N4O5/c1-5-15-47-29-20-30(39-22-29)33(44)31(18-26-16-27(37)19-28(38)17-26)40-34(45)32(12-11-25-9-7-6-8-10-25)42-14-13-36(35(42)46,21-23(2)3)41-24(4)43/h6-10,16-17,19,23,29-33,39,44H,5,11-15,18,20-22H2,1-4H3,(H,40,45)(H,41,43)/t29-,30-,31+,32+,33-,36+/m1/s1
PB0 InChIKey InChI 1.03 LPZOLMFQGUDKQH-ZXWXCOCLSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PB0 "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-2-[(3R)-3-(acetylamino)-3-(2-methylpropyl)-2-oxopyrrolidin-1-yl]-N-{(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(2R,4R)-4-propoxypyrrolidin-2-yl]propan-2-yl}-4-phenylbutanamide
PB0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (2S)-2-[(3R)-3-acetamido-3-(2-methylpropyl)-2-oxo-pyrrolidin-1-yl]-N-[(1R,2S)-3-(3,5-difluorophenyl)-1-hydroxy-1-[(2R,4R)-4-propoxypyrrolidin-2-yl]propan-2-yl]-4-phenyl-butanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PB0 'Create component' 2011-03-21 RCSB
PB0 'Modify aromatic_flag' 2011-06-04 RCSB
PB0 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PB0 C1 C 21.812 3.220 1
PB0 C2 C 21.812 1.720 2
PB0 C3 C 20.513 3.970 3
PB0 C4 C 20.513 0.970 4
PB0 C5 C 19.214 3.220 5
PB0 C6 C 11.420 -1.280 6
PB0 C7 C 8.822 -1.280 7
PB0 C8 C 10.121 -3.530 8
PB0 C9 C 19.214 1.720 9
PB0 C10 C 10.121 -0.530 10
PB0 C11 C 11.420 -2.780 11
PB0 C12 C 8.822 -2.780 12
PB0 C13 C 16.531 -1.412 13
PB0 C14 C 17.806 -4.769 14
PB0 C15 C 14.018 1.720 15
PB0 C16 C 14.567 -2.838 16
PB0 C17 C 8.751 3.360 17
PB0 C18 C 14.104 -1.412 18
PB0 C19 C 8.497 5.774 19
PB0 C20 C 7.747 4.475 20
PB0 C21 C 10.121 3.970 21
PB0 C22 C 16.067 -2.838 22
PB0 C23 C 19.232 -5.232 23
PB0 C24 C 3.000 6.588 24
PB0 C25 C 14.768 -6.588 25
PB0 C26 C 13.469 -4.338 26
PB0 C27 C 17.915 0.970 27
PB0 C28 C 10.121 0.970 28
PB0 C29 C 16.067 -4.338 29
PB0 C30 C 3.882 5.375 30
PB0 C31 C 16.616 1.720 31
PB0 C32 C 5.373 5.531 32
PB0 C33 C 15.317 0.970 33
PB0 C34 C 11.420 3.220 34
PB0 C35 C 14.768 -5.088 35
PB0 C36 C 11.420 1.720 36
PB0 N37 N 9.964 5.462 37
PB0 N38 N 15.317 -0.530 38
PB0 N39 N 17.494 -3.302 39
PB0 N40 N 12.719 0.970 40
PB0 O41 O 17.957 -0.948 41
PB0 O42 O 16.691 -5.773 42
PB0 O43 O 14.018 3.220 43
PB0 O44 O 12.719 3.970 44
PB0 O45 O 6.255 4.318 45
PB0 F46 F 12.719 -3.530 46
PB0 F47 F 7.523 -3.530 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PB0 C1 C3 DOUBLE NONE 1
PB0 C1 C2 SINGLE NONE 2
PB0 C2 C4 DOUBLE NONE 3
PB0 C3 C5 SINGLE NONE 4
PB0 C4 C9 SINGLE NONE 5
PB0 C5 C9 DOUBLE NONE 6
PB0 C11 C6 DOUBLE NONE 7
PB0 C6 C10 SINGLE NONE 8
PB0 C12 C7 SINGLE NONE 9
PB0 C10 C7 DOUBLE NONE 10
PB0 C11 C8 SINGLE NONE 11
PB0 C8 C12 DOUBLE NONE 12
PB0 C9 C27 SINGLE NONE 13
PB0 C10 C28 SINGLE NONE 14
PB0 F46 C11 SINGLE NONE 15
PB0 C12 F47 SINGLE NONE 16
PB0 N38 C13 SINGLE NONE 17
PB0 C13 O41 DOUBLE NONE 18
PB0 C13 C22 SINGLE NONE 19
PB0 O42 C14 DOUBLE NONE 20
PB0 C23 C14 SINGLE NONE 21
PB0 C14 N39 SINGLE NONE 22
PB0 C33 C15 SINGLE NONE 23
PB0 O43 C15 DOUBLE NONE 24
PB0 C15 N40 SINGLE NONE 25
PB0 C16 C18 SINGLE NONE 26
PB0 C16 C22 SINGLE NONE 27
PB0 C17 C20 SINGLE NONE 28
PB0 C21 C17 SINGLE BEGINWEDGE 29
PB0 C18 N38 SINGLE NONE 30
PB0 C20 C19 SINGLE NONE 31
PB0 C19 N37 SINGLE NONE 32
PB0 C20 O45 SINGLE BEGINWEDGE 33
PB0 C21 C34 SINGLE NONE 34
PB0 C21 N37 SINGLE NONE 35
PB0 N39 C22 SINGLE NONE 36
PB0 C22 C29 SINGLE BEGINWEDGE 37
PB0 C30 C24 SINGLE NONE 38
PB0 C35 C25 SINGLE NONE 39
PB0 C26 C35 SINGLE NONE 40
PB0 C27 C31 SINGLE NONE 41
PB0 C36 C28 SINGLE BEGINWEDGE 42
PB0 C29 C35 SINGLE NONE 43
PB0 C32 C30 SINGLE NONE 44
PB0 C33 C31 SINGLE BEGINDASH 45
PB0 C32 O45 SINGLE NONE 46
PB0 C33 N38 SINGLE NONE 47
PB0 C36 C34 SINGLE NONE 48
PB0 C34 O44 SINGLE BEGINWEDGE 49
PB0 N40 C36 SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PB0 MurckoScaffold S1 scaffold 'O=C(N[C@@H](Cc1ccccc1)C[C@H]1CCCN1)[C@H](CCc1ccccc1)N1CCCC1=O' InChI=1S/C27H35N3O2/c31-26-14-8-18-30(26)25(16-15-21-9-3-1-4-10-21)27(32)29-24(20-23-13-7-17-28-23)19-22-11-5-2-6-12-22/h1-6,9-12,23-25,28H,7-8,13-20H2,(H,29,32)/t23-,24+,25+/m1/s1 GRNDOWPEIWOJEB-DSITVLBTSA-N
PB0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
PB0 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PB0 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PB0 C1 S1 1
PB0 C2 S1 1
PB0 C3 S1 1
PB0 C4 S1 1
PB0 C5 S1 1
PB0 C6 S1 1
PB0 C7 S1 1
PB0 C8 S1 1
PB0 C9 S1 1
PB0 C10 S1 1
PB0 C11 S1 1
PB0 C12 S1 1
PB0 C13 S1 1
PB0 C15 S1 1
PB0 C16 S1 1
PB0 C17 S1 1
PB0 C18 S1 1
PB0 C19 S1 1
PB0 C20 S1 1
PB0 C21 S1 1
PB0 C22 S1 1
PB0 C27 S1 1
PB0 C28 S1 1
PB0 C31 S1 1
PB0 C33 S1 1
PB0 C34 S1 1
PB0 C36 S1 1
PB0 N37 S1 1
PB0 N38 S1 1
PB0 N40 S1 1
PB0 O41 S1 1
PB0 O43 S1 1
PB0 N38 F1 1
PB0 C13 F1 1
PB0 O41 F1 1
PB0 C22 F1 1
PB0 N39 F1 2
PB0 C14 F1 2
PB0 O42 F1 2
PB0 C23 F1 2
PB0 N40 F1 3
PB0 C15 F1 3
PB0 O43 F1 3
PB0 C33 F1 3
PB0 O41 F2 1
PB0 C13 F2 1
PB0 C22 F2 1
PB0 N39 F2 1
PB0 O43 F2 2
PB0 C15 F2 2
PB0 C33 F2 2
PB0 N38 F2 2
PB0 C1 F3 1
PB0 C3 F3 1
PB0 C5 F3 1
PB0 C9 F3 1
PB0 C4 F3 1
PB0 C2 F3 1
PB0 C6 F3 2
PB0 C11 F3 2
PB0 C8 F3 2
PB0 C12 F3 2
PB0 C7 F3 2
PB0 C10 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id PB0
_pdbe_chem_comp_rdkit_properties.exactmw 656.375
_pdbe_chem_comp_rdkit_properties.amw 656.815
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.583
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 346.878
_pdbe_chem_comp_rdkit_properties.tpsa 120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.555
_pdbe_chem_comp_rdkit_properties.CrippenMR 174.790
_pdbe_chem_comp_rdkit_properties.chi0v 22.586
_pdbe_chem_comp_rdkit_properties.chi1v 11.865
_pdbe_chem_comp_rdkit_properties.chi2v 4.950
_pdbe_chem_comp_rdkit_properties.chi3v 4.950
_pdbe_chem_comp_rdkit_properties.chi4v 3.216
_pdbe_chem_comp_rdkit_properties.chi0n 72.586
_pdbe_chem_comp_rdkit_properties.chi1n 36.615
_pdbe_chem_comp_rdkit_properties.chi2n 4.950
_pdbe_chem_comp_rdkit_properties.chi3n 4.950
_pdbe_chem_comp_rdkit_properties.chi4n 3.216
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.410
_pdbe_chem_comp_rdkit_properties.kappa1 8.475
_pdbe_chem_comp_rdkit_properties.kappa2 16.614
_pdbe_chem_comp_rdkit_properties.kappa3 9.806
_pdbe_chem_comp_rdkit_properties.Phi 2.996
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PB0 UniChem ChEMBL CHEMBL1915990
PB0 UniChem PDBe PB0
PB0 UniChem ZINC ZINC000082140785
PB0 UniChem SureChEMBL SCHEMBL4795205
PB0 UniChem 'PubChem TPHARMA' 16680602
PB0 UniChem BindingDb 50357731
PB0 UniChem PubChem 11578322
PB0 UniChem 'PubChem TPHARMA' 24422907
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PB0 C1 -5.062 1.630 -3.195 ETKDGv3 1
PB0 C2 -4.482 0.470 -3.900 ETKDGv3 2
PB0 C3 -4.260 2.514 -2.590 ETKDGv3 3
PB0 C4 -3.155 0.298 -3.931 ETKDGv3 4
PB0 C5 -2.795 2.328 -2.621 ETKDGv3 5
PB0 C6 0.481 -1.267 3.105 ETKDGv3 6
PB0 C7 0.197 1.035 3.875 ETKDGv3 7
PB0 C8 -1.583 -0.600 4.223 ETKDGv3 8
PB0 C9 -2.258 1.266 -3.249 ETKDGv3 9
PB0 C10 0.983 0.120 3.279 ETKDGv3 10
PB0 C11 -0.731 -1.608 3.561 ETKDGv3 11
PB0 C12 -1.144 0.656 4.369 ETKDGv3 12
PB0 C13 -2.801 -1.219 -0.850 ETKDGv3 13
PB0 C14 -6.434 -0.582 -0.882 ETKDGv3 14
PB0 C15 0.424 0.775 -0.370 ETKDGv3 15
PB0 C16 -3.879 0.340 0.519 ETKDGv3 16
PB0 C17 5.759 1.290 -0.398 ETKDGv3 17
PB0 C18 -2.392 0.692 0.407 ETKDGv3 18
PB0 C19 6.319 -0.736 0.790 ETKDGv3 19
PB0 C20 6.796 0.184 -0.341 ETKDGv3 20
PB0 C21 4.536 0.682 0.275 ETKDGv3 21
PB0 C22 -4.030 -1.117 0.001 ETKDGv3 22
PB0 C23 -7.468 -0.882 -1.918 ETKDGv3 23
PB0 C24 10.084 1.688 -1.987 ETKDGv3 24
PB0 C25 -6.242 -3.269 1.305 ETKDGv3 25
PB0 C26 -5.630 -1.375 2.876 ETKDGv3 26
PB0 C27 -0.764 1.076 -3.305 ETKDGv3 27
PB0 C28 2.339 0.501 2.738 ETKDGv3 28
PB0 C29 -3.893 -2.190 1.132 ETKDGv3 29
PB0 C30 9.559 0.256 -1.916 ETKDGv3 30
PB0 C31 -0.284 -0.207 -2.598 ETKDGv3 31
PB0 C32 9.109 -0.119 -0.498 ETKDGv3 32
PB0 C33 -0.449 -0.253 -1.058 ETKDGv3 33
PB0 C34 3.567 1.767 0.839 ETKDGv3 34
PB0 C35 -5.105 -2.544 2.038 ETKDGv3 35
PB0 C36 2.213 1.225 1.382 ETKDGv3 36
PB0 N37 5.053 -0.215 1.310 ETKDGv3 37
PB0 N38 -1.863 -0.173 -0.639 ETKDGv3 38
PB0 N39 -5.215 -1.350 -0.849 ETKDGv3 39
PB0 N40 1.555 0.351 0.404 ETKDGv3 40
PB0 O41 -2.576 -2.186 -1.627 ETKDGv3 41
PB0 O42 -6.687 0.284 -0.004 ETKDGv3 42
PB0 O43 0.159 2.003 -0.473 ETKDGv3 43
PB0 O44 3.314 2.746 -0.140 ETKDGv3 44
PB0 O45 8.070 0.735 -0.054 ETKDGv3 45
PB0 F46 -1.178 -2.880 3.414 ETKDGv3 46
PB0 F47 -1.929 1.585 4.969 ETKDGv3 47
PB0 H1 -6.135 1.764 -3.170 ETKDGv3 48
PB0 H2 -5.132 -0.239 -4.395 ETKDGv3 49
PB0 H3 -4.684 3.365 -2.072 ETKDGv3 50
PB0 H4 -2.739 -0.551 -4.457 ETKDGv3 51
PB0 H5 -2.165 3.057 -2.126 ETKDGv3 52
PB0 H6 1.096 -2.009 2.613 ETKDGv3 53
PB0 H7 0.535 2.057 3.996 ETKDGv3 54
PB0 H8 -2.563 -0.880 4.586 ETKDGv3 55
PB0 H16 -4.416 1.049 -0.143 ETKDGv3 56
PB0 H16A -4.231 0.488 1.557 ETKDGv3 57
PB0 H17 5.542 1.592 -1.446 ETKDGv3 58
PB0 H17A 6.111 2.178 0.176 ETKDGv3 59
PB0 H18 -1.877 0.471 1.367 ETKDGv3 60
PB0 H18A -2.264 1.763 0.147 ETKDGv3 61
PB0 H19 7.076 -0.806 1.604 ETKDGv3 62
PB0 H19A 6.152 -1.761 0.394 ETKDGv3 63
PB0 H20 6.769 -0.362 -1.315 ETKDGv3 64
PB0 H21 4.002 0.071 -0.487 ETKDGv3 65
PB0 H23 -8.123 -1.702 -1.558 ETKDGv3 66
PB0 H23A -8.086 0.020 -2.116 ETKDGv3 67
PB0 H23B -6.982 -1.192 -2.866 ETKDGv3 68
PB0 H24 10.937 1.822 -1.289 ETKDGv3 69
PB0 H24A 10.431 1.904 -3.019 ETKDGv3 70
PB0 H24B 9.280 2.409 -1.728 ETKDGv3 71
PB0 H25 -6.910 -2.561 0.781 ETKDGv3 72
PB0 H25A -5.837 -4.003 0.576 ETKDGv3 73
PB0 H25B -6.864 -3.824 2.039 ETKDGv3 74
PB0 H26 -4.796 -0.883 3.419 ETKDGv3 75
PB0 H26A -6.352 -1.751 3.632 ETKDGv3 76
PB0 H26B -6.155 -0.633 2.247 ETKDGv3 77
PB0 H27 -0.223 1.961 -2.912 ETKDGv3 78
PB0 H27A -0.476 1.003 -4.377 ETKDGv3 79
PB0 H28 2.948 -0.419 2.632 ETKDGv3 80
PB0 H28A 2.857 1.158 3.470 ETKDGv3 81
PB0 H29 -3.056 -1.885 1.797 ETKDGv3 82
PB0 H29A -3.561 -3.147 0.671 ETKDGv3 83
PB0 H30 10.367 -0.439 -2.232 ETKDGv3 84
PB0 H30A 8.712 0.140 -2.626 ETKDGv3 85
PB0 H31 0.797 -0.333 -2.828 ETKDGv3 86
PB0 H31A -0.787 -1.085 -3.053 ETKDGv3 87
PB0 H32 9.971 -0.002 0.192 ETKDGv3 88
PB0 H32A 8.832 -1.199 -0.462 ETKDGv3 89
PB0 H33 -0.080 -1.254 -0.743 ETKDGv3 90
PB0 H34 4.081 2.289 1.676 ETKDGv3 91
PB0 H35 -4.707 -3.281 2.772 ETKDGv3 92
PB0 H36 1.573 2.117 1.571 ETKDGv3 93
PB0 HN37 5.281 0.350 2.163 ETKDGv3 94
PB0 HN39 -5.192 -2.198 -1.461 ETKDGv3 95
PB0 HN40 1.885 -0.637 0.315 ETKDGv3 96
PB0 HO44 2.928 2.286 -0.932 ETKDGv3 97
#