data_PBM
#
_chem_comp.id PBM
_chem_comp.name "TRIMETHYL LEAD ION"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAI
_chem_comp.formula "C3 H9 Pb"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 252.304
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PBM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1TIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PBM PB PB PB 1 0 N N N N N N 9.541 -17.077 13.425 ? ? ? PB PBM 1
PBM C1 C1 C 0 1 N N N N N N 10.468 -16.529 15.323 ? ? ? C1 PBM 2
PBM C2 C2 C 0 1 N N N N N N 7.743 -18.366 13.406 ? ? ? C2 PBM 3
PBM C3 C3 C 0 1 N N N N N N 10.488 -16.428 11.559 ? ? ? C3 PBM 4
PBM H11 1H1 H 0 1 N N N N N N 11.374 -15.879 15.332 ? ? ? H11 PBM 5
PBM H12 2H1 H 0 1 N N N N N N 9.691 -16.061 15.973 ? ? ? H12 PBM 6
PBM H13 3H1 H 0 1 N N N N N N 10.697 -17.463 15.886 ? ? ? H13 PBM 7
PBM H21 1H2 H 0 1 N N N N N N 7.269 -18.646 12.436 ? ? ? H21 PBM 8
PBM H22 2H2 H 0 1 N N N N N N 7.972 -19.300 13.969 ? ? ? H22 PBM 9
PBM H23 3H2 H 0 1 N N N N N N 6.966 -17.898 14.056 ? ? ? H23 PBM 10
PBM H31 1H3 H 0 1 N N N N N N 10.014 -16.708 10.589 ? ? ? H31 PBM 11
PBM H32 2H3 H 0 1 N N N N N N 10.620 -15.321 11.588 ? ? ? H32 PBM 12
PBM H33 3H3 H 0 1 N N N N N N 11.548 -16.773 11.554 ? ? ? H33 PBM 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PBM PB C1 SING N N 1
PBM PB C2 SING N N 2
PBM PB C3 SING N N 3
PBM C1 H11 SING N N 4
PBM C1 H12 SING N N 5
PBM C1 H13 SING N N 6
PBM C2 H21 SING N N 7
PBM C2 H22 SING N N 8
PBM C2 H23 SING N N 9
PBM C3 H31 SING N N 10
PBM C3 H32 SING N N 11
PBM C3 H33 SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PBM SMILES ACDLabs 10.04 "[Pb+](C)(C)C"
PBM SMILES_CANONICAL CACTVS 3.341 C[Pb+](C)C
PBM SMILES CACTVS 3.341 C[Pb+](C)C
PBM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[Pb+](C)C
PBM SMILES "OpenEye OEToolkits" 1.5.0 C[Pb+](C)C
PBM InChI InChI 1.03 InChI=1S/3CH3.Pb/h3*1H3;/q;;;+1
PBM InChIKey InChI 1.03 SNBFOEGVGALPSE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PBM "SYSTEMATIC NAME" ACDLabs 10.04 trimethylplumbanylium
PBM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 trimethyllead
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PBM 'Create component' 1999-07-08 EBI
PBM 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PBM PB Pb 0.000 -0.000 1
PBM C1 C 0.005 1.500 2
PBM C2 C 1.296 -0.755 3
PBM C3 C -1.302 -0.745 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PBM PB C1 SINGLE NONE 1
PBM PB C2 SINGLE NONE 2
PBM PB C3 SINGLE NONE 3
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id PBM
_pdbe_chem_comp_rdkit_properties.exactmw 253.047
_pdbe_chem_comp_rdkit_properties.amw 252.305
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 48.982
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.371
_pdbe_chem_comp_rdkit_properties.CrippenMR 23.346
_pdbe_chem_comp_rdkit_properties.chi0v 5.887
_pdbe_chem_comp_rdkit_properties.chi1v 6.581
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 11
_pdbe_chem_comp_rdkit_properties.chi1n 5.250
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.922
_pdbe_chem_comp_rdkit_properties.kappa1 0.453
_pdbe_chem_comp_rdkit_properties.kappa2 2.177
_pdbe_chem_comp_rdkit_properties.kappa3 12.697
_pdbe_chem_comp_rdkit_properties.Phi 0.247
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PBM UniChem PDBe PBM
PBM UniChem Nikkaji J1.154.728A
PBM UniChem BRENDA 228221
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PBM PB 0.087 -0.020 0.647 ETKDGv3 1
PBM C1 -0.745 1.551 0.280 ETKDGv3 2
PBM C2 -0.986 -1.435 -0.150 ETKDGv3 3
PBM C3 1.727 -0.100 -0.007 ETKDGv3 4
PBM H11 -0.851 1.712 -0.813 ETKDGv3 5
PBM H12 -1.750 1.518 0.748 ETKDGv3 6
PBM H13 -0.159 2.382 0.722 ETKDGv3 7
PBM H21 -0.525 -2.293 -0.682 ETKDGv3 8
PBM H22 -0.995 -1.639 0.941 ETKDGv3 9
PBM H23 -2.025 -1.291 -0.508 ETKDGv3 10
PBM H31 2.340 0.714 0.432 ETKDGv3 11
PBM H32 2.143 -1.082 0.296 ETKDGv3 12
PBM H33 1.740 -0.017 -1.114 ETKDGv3 13
#