data_PEJ
#
_chem_comp.id PEJ
_chem_comp.name PERIODATE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "I O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 2004-06-04
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 190.902
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PEJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1TB4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PEJ I I I 0 1 N N N N N N -37.931 29.219 -13.408 -0.000 -0.000 0.000 I PEJ 1
PEJ O1 O1 O -1 1 N N N N N N -39.422 28.852 -12.728 0.000 -1.443 -1.021 O1 PEJ 2
PEJ O2 O2 O 0 1 N N N N N N -37.235 30.636 -12.816 0.000 1.443 -1.021 O2 PEJ 3
PEJ O3 O3 O 0 1 N N N N N N -38.163 29.286 -15.084 -1.443 0.000 1.020 O3 PEJ 4
PEJ O4 O4 O 0 1 N N N N N N -36.899 27.904 -13.082 1.443 -0.000 1.021 O4 PEJ 5
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PEJ I O1 SING N N 1
PEJ I O2 DOUB N N 2
PEJ I O3 DOUB N N 3
PEJ I O4 DOUB N N 4
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PEJ SMILES ACDLabs 10.04 "[O-]I(=O)(=O)=O"
PEJ InChI InChI 1.06 InChI=1S/HIO4/c2-1(3,4)5/h(H,2,3,4,5)/p-1
PEJ InChIKey InChI 1.06 KHIWWQKSHDUIBK-UHFFFAOYSA-M
PEJ SMILES_CANONICAL CACTVS 3.385 "[O-][I](=O)(=O)=O"
PEJ SMILES CACTVS 3.385 "[O-][I](=O)(=O)=O"
PEJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[O-]I(=O)(=O)=O"
PEJ SMILES "OpenEye OEToolkits" 2.0.7 "[O-]I(=O)(=O)=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PEJ "SYSTEMATIC NAME" ACDLabs 10.04 periodate
PEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 periodate
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PEJ 'Create component' 2004-06-04 RCSB
PEJ 'Modify descriptor' 2023-09-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PEJ I I 4.299 0.000 1
PEJ O1 O 3.000 -0.750 2
PEJ O2 O 5.598 0.750 3
PEJ O3 O 3.549 1.299 4
PEJ O4 O 5.049 -1.299 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PEJ I O1 SINGLE NONE 1
PEJ I O2 SINGLE NONE 2
PEJ I O3 SINGLE NONE 3
PEJ I O4 SINGLE NONE 4
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id PEJ
_pdbe_chem_comp_rdkit_properties.exactmw 190.885
_pdbe_chem_comp_rdkit_properties.amw 190.900
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 5
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 34.391
_pdbe_chem_comp_rdkit_properties.tpsa 92.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP -7.752
_pdbe_chem_comp_rdkit_properties.CrippenMR 0
_pdbe_chem_comp_rdkit_properties.chi0v 4.168
_pdbe_chem_comp_rdkit_properties.chi1v 4.140
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 2.011
_pdbe_chem_comp_rdkit_properties.chi1n 0.617
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.570
_pdbe_chem_comp_rdkit_properties.kappa1 5.570
_pdbe_chem_comp_rdkit_properties.kappa2 1.349
_pdbe_chem_comp_rdkit_properties.kappa3 92.904
_pdbe_chem_comp_rdkit_properties.Phi 1.503
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PEJ UniChem PDBe PEJ
PEJ UniChem ChEBI 49826
PEJ UniChem fdasrs B45A1BUM4Q
PEJ UniChem 'PubChem TPHARMA' 15219843
PEJ UniChem Nikkaji J301.867I
PEJ UniChem BindingDb 50159782
PEJ UniChem 'EPA CompTox Dashboard' DTXSID80164573
PEJ UniChem BRENDA 102904
PEJ UniChem BRENDA 113757
PEJ UniChem BRENDA 8174
PEJ UniChem PubChem 167232
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PEJ I -0.023 0.036 0.009 ETKDGv3 1
PEJ O1 -0.866 -1.200 -1.659 ETKDGv3 2
PEJ O2 1.705 1.156 -0.714 ETKDGv3 3
PEJ O3 -1.426 1.321 0.670 ETKDGv3 4
PEJ O4 0.610 -1.314 1.694 ETKDGv3 5
#