data_PFF
#
_chem_comp.id PFF
_chem_comp.name 4-FLUORO-L-PHENYLALANINE
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C9 H10 F N O2"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-30
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 183.180
_chem_comp.one_letter_code F
_chem_comp.three_letter_code PFF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PFF N N N 0 1 N N N Y Y N 46.465 27.890 1.389 -0.040 -1.210 0.053 N PFF 1
PFF CA CA C 0 1 N N S Y N N 47.091 29.119 0.910 1.172 -1.709 0.652 CA PFF 2
PFF C C C 0 1 N N N Y N Y 48.578 29.095 1.054 1.083 -3.207 0.905 C PFF 3
PFF O O O 0 1 N N N Y N Y 49.223 30.130 1.065 0.040 -3.770 1.222 O PFF 4
PFF OXT OXT O 0 1 N Y N Y N Y ? ? ? 2.247 -3.882 0.744 OXT PFF 5
PFF CB CB C 0 1 N N N N N N 46.628 30.322 1.695 1.484 -0.975 1.962 CB PFF 6
PFF CG CG C 0 1 Y N N N N N 45.398 31.033 1.284 2.940 -1.060 2.353 CG PFF 7
PFF CD1 CD1 C 0 1 Y N N N N N 44.257 30.753 2.015 3.369 -2.109 3.149 CD1 PFF 8
PFF CD2 CD2 C 0 1 Y N N N N N 45.270 31.304 -0.071 3.820 -0.086 1.907 CD2 PFF 9
PFF CE1 CE1 C 0 1 Y N N N N N 43.027 30.643 1.380 4.715 -2.188 3.510 CE1 PFF 10
PFF CE2 CE2 C 0 1 Y N N N N N 44.037 31.227 -0.706 5.166 -0.165 2.268 CE2 PFF 11
PFF CZ CZ C 0 1 Y N N N N N 42.906 30.905 0.023 5.613 -1.216 3.069 CZ PFF 12
PFF F F F 0 1 N N N N N N 41.702 30.837 -0.574 6.904 -1.291 3.415 F PFF 13
PFF H 1HN H 0 1 N N N Y Y N 45.440 27.989 1.351 -0.102 -1.155 -0.950 H PFF 14
PFF H2 2HN H 0 1 N Y N Y Y N 46.757 27.102 0.794 -0.715 -0.741 0.634 H2 PFF 15
PFF HA HA H 0 1 N N N Y N N 46.800 29.187 -0.149 1.965 -1.558 -0.089 HA PFF 16
PFF HXT HXT H 0 1 N Y N Y N Y 0.945 -0.015 0.091 2.188 -4.848 0.901 HXT PFF 17
PFF HB2 1HBC H 0 1 N N N N N N 46.472 29.987 2.731 1.215 0.087 1.879 HB2 PFF 18
PFF HB3 2HBC H 0 1 N N N N N N 47.423 31.063 1.523 0.859 -1.368 2.775 HB3 PFF 19
PFF HD1 HD1 H 0 1 N N N N N N 44.322 30.622 3.066 2.677 -2.871 3.497 HD1 PFF 20
PFF HD2 HD2 H 0 1 N N N N N N 46.129 31.575 -0.632 3.481 0.736 1.283 HD2 PFF 21
PFF HE1 HE1 H 0 1 N N N N N N 42.171 30.356 1.938 5.063 -3.006 4.134 HE1 PFF 22
PFF HE2 HE2 H 0 1 N N N N N N 43.963 31.415 -1.748 5.865 0.592 1.925 HE2 PFF 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PFF N CA SING N N 1
PFF N H SING N N 2
PFF N H2 SING N N 3
PFF CA C SING N N 4
PFF CA CB SING N N 5
PFF CA HA SING N N 6
PFF C O DOUB N N 7
PFF C OXT SING N N 8
PFF OXT HXT SING N N 9
PFF CB CG SING N N 10
PFF CB HB2 SING N N 11
PFF CB HB3 SING N N 12
PFF CG CD1 DOUB Y N 13
PFF CG CD2 SING Y N 14
PFF CD1 CE1 SING Y N 15
PFF CD1 HD1 SING N N 16
PFF CD2 CE2 DOUB Y N 17
PFF CD2 HD2 SING N N 18
PFF CE1 CZ DOUB Y N 19
PFF CE1 HE1 SING N N 20
PFF CE2 CZ SING Y N 21
PFF CE2 HE2 SING N N 22
PFF CZ F SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PFF SMILES ACDLabs 10.04 Fc1ccc(cc1)CC(C(=O)O)N
PFF SMILES_CANONICAL CACTVS 3.341 N[C@@H](Cc1ccc(F)cc1)C(O)=O
PFF SMILES CACTVS 3.341 N[CH](Cc1ccc(F)cc1)C(O)=O
PFF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@@H](C(=O)O)N)F
PFF SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC(C(=O)O)N)F
PFF InChI InChI 1.03 InChI=1S/C9H10FNO2/c10-7-3-1-6(2-4-7)5-8(11)9(12)13/h1-4,8H,5,11H2,(H,12,13)/t8-/m0/s1
PFF InChIKey InChI 1.03 XWHHYOYVRVGJJY-QMMMGPOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PFF "SYSTEMATIC NAME" ACDLabs 10.04 4-fluoro-L-phenylalanine
PFF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(4-fluorophenyl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PFF 'Create component' 2003-07-30 EBI
PFF 'Modify descriptor' 2011-06-04 RCSB
PFF 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PFF N N 6.897 1.035 1
PFF CA C 5.598 1.785 2
PFF C C 5.598 3.285 3
PFF O O 6.897 4.035 4
PFF OXT O 4.299 4.035 5
PFF CB C 4.299 1.035 6
PFF CG C 4.299 -0.465 7
PFF CD1 C 3.000 -1.215 8
PFF CD2 C 5.598 -1.215 9
PFF CE1 C 3.000 -2.715 10
PFF CE2 C 5.598 -2.715 11
PFF CZ C 4.299 -3.465 12
PFF F F 4.299 -4.965 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PFF CA N SINGLE BEGINWEDGE 1
PFF CA C SINGLE NONE 2
PFF CA CB SINGLE NONE 3
PFF C O DOUBLE NONE 4
PFF C OXT SINGLE NONE 5
PFF CB CG SINGLE NONE 6
PFF CG CD1 DOUBLE NONE 7
PFF CG CD2 SINGLE NONE 8
PFF CD1 CE1 SINGLE NONE 9
PFF CD2 CE2 DOUBLE NONE 10
PFF CE1 CZ DOUBLE NONE 11
PFF CE2 CZ SINGLE NONE 12
PFF CZ F SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PFF MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PFF peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PFF phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PFF CG S1 1
PFF CD1 S1 1
PFF CD2 S1 1
PFF CE1 S1 1
PFF CE2 S1 1
PFF CZ S1 1
PFF O F1 1
PFF C F1 1
PFF CA F1 1
PFF N F1 1
PFF CG F2 1
PFF CD1 F2 1
PFF CE1 F2 1
PFF CZ F2 1
PFF CE2 F2 1
PFF CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PFF
_pdbe_chem_comp_rdkit_properties.exactmw 183.070
_pdbe_chem_comp_rdkit_properties.amw 183.182
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.240
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.725
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.449
_pdbe_chem_comp_rdkit_properties.chi0v 6.142
_pdbe_chem_comp_rdkit_properties.chi1v 3.071
_pdbe_chem_comp_rdkit_properties.chi2v 1.031
_pdbe_chem_comp_rdkit_properties.chi3v 1.031
_pdbe_chem_comp_rdkit_properties.chi4v 0.529
_pdbe_chem_comp_rdkit_properties.chi0n 16.142
_pdbe_chem_comp_rdkit_properties.chi1n 7.874
_pdbe_chem_comp_rdkit_properties.chi2n 1.031
_pdbe_chem_comp_rdkit_properties.chi3n 1.031
_pdbe_chem_comp_rdkit_properties.chi4n 0.529
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.420
_pdbe_chem_comp_rdkit_properties.kappa1 2.783
_pdbe_chem_comp_rdkit_properties.kappa2 4.000
_pdbe_chem_comp_rdkit_properties.kappa3 2.833
_pdbe_chem_comp_rdkit_properties.Phi 0.856
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PFF UniChem ChEMBL CHEMBL1235242
PFF UniChem PDBe PFF
PFF UniChem ChEBI 44909
PFF UniChem ZINC ZINC000000113778
PFF UniChem eMolecules 512403
PFF UniChem fdasrs E2K2VDK6KK
PFF UniChem SureChEMBL SCHEMBL44071
PFF UniChem MetaboLights MTBLC10625
PFF UniChem MetaboLights MTBLC44909
PFF UniChem BRENDA 134608
PFF UniChem BRENDA 16084
PFF UniChem BRENDA 197771
PFF UniChem BRENDA 55321
PFF UniChem BRENDA 7479
PFF UniChem BRENDA 91354
PFF UniChem BRENDA 94602
PFF UniChem ChemicalBook CB5709829
PFF UniChem MedChemExpress HY-W002291
PFF UniChem 'Probes And Drugs' PD015171
PFF UniChem Nikkaji J863J
PFF UniChem 'PubChem TPHARMA' 14992809
PFF UniChem PubChem 6926425
PFF UniChem PubChem 716312
PFF UniChem Mcule MCULE-4577062521
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PFF N 1.351 -0.445 1.595 ETKDGv3 1
PFF CA 1.578 -0.529 0.149 ETKDGv3 2
PFF C 3.045 -0.395 -0.164 ETKDGv3 3
PFF O 3.656 -1.339 -0.733 ETKDGv3 4
PFF OXT 3.730 0.769 0.174 ETKDGv3 5
PFF CB 0.775 0.557 -0.588 ETKDGv3 6
PFF CG -0.708 0.359 -0.406 ETKDGv3 7
PFF CD1 -1.378 1.011 0.564 ETKDGv3 8
PFF CD2 -1.435 -0.605 -1.269 ETKDGv3 9
PFF CE1 -2.826 0.783 0.750 ETKDGv3 10
PFF CE2 -2.746 -0.812 -1.094 ETKDGv3 11
PFF CZ -3.477 -0.082 -0.037 ETKDGv3 12
PFF F -4.805 -0.293 0.135 ETKDGv3 13
PFF H 1.734 0.458 1.958 ETKDGv3 14
PFF H2 1.876 -1.220 2.062 ETKDGv3 15
PFF HA 1.228 -1.525 -0.205 ETKDGv3 16
PFF HXT 4.716 0.870 -0.032 ETKDGv3 17
PFF HB2 1.009 0.514 -1.675 ETKDGv3 18
PFF HB3 1.078 1.566 -0.231 ETKDGv3 19
PFF HD1 -0.866 1.704 1.219 ETKDGv3 20
PFF HD2 -0.905 -1.147 -2.043 ETKDGv3 21
PFF HE1 -3.357 1.317 1.528 ETKDGv3 22
PFF HE2 -3.273 -1.515 -1.726 ETKDGv3 23
#