data_PHL
#
_chem_comp.id PHL
_chem_comp.name L-PHENYLALANINOL
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C9 H13 N O"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms "bound form of Phenylalaninal"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 151.206
_chem_comp.one_letter_code F
_chem_comp.three_letter_code PHL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JOH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PHL N N N 0 1 N N N Y Y N -10.941 16.569 8.676 1.494 1.299 0.569 N PHL 1
PHL CA CA C 0 1 N N S Y N N -11.446 17.174 9.928 1.603 -0.089 0.101 CA PHL 2
PHL C C C 0 1 N N N Y N Y -11.017 18.626 10.000 3.022 -0.343 -0.414 C PHL 3
PHL O O O 0 1 N N N Y N Y -11.698 19.267 11.032 3.948 -0.235 0.669 O PHL 4
PHL CB CB C 0 1 N N N N N N -10.894 16.353 11.096 0.600 -0.326 -1.030 CB PHL 5
PHL CG CG C 0 1 Y N N N N N -11.366 14.934 11.120 -0.802 -0.196 -0.494 CG PHL 6
PHL CD1 CD1 C 0 1 Y N N N N N -12.662 14.608 11.496 -1.434 1.033 -0.503 CD1 PHL 7
PHL CD2 CD2 C 0 1 Y N N N N N -10.525 13.900 10.713 -1.458 -1.307 0.002 CD2 PHL 8
PHL CE1 CE1 C 0 1 Y N N N N N -13.121 13.312 11.481 -2.720 1.152 -0.011 CE1 PHL 9
PHL CE2 CE2 C 0 1 Y N N N N N -10.955 12.597 10.731 -2.744 -1.188 0.495 CE2 PHL 10
PHL CZ CZ C 0 1 Y N N N N N -12.240 12.287 11.124 -3.374 0.042 0.490 CZ PHL 11
PHL H HN1 H 0 1 N N N Y Y N -10.827 17.281 7.983 1.688 1.949 -0.178 H PHL 12
PHL H2 HN2 H 0 1 N Y N Y Y N -10.060 16.130 8.850 0.586 1.474 0.973 H2 PHL 13
PHL HA HA H 0 1 N N N Y N N -12.545 17.160 9.968 1.389 -0.769 0.925 HA PHL 14
PHL HC1 H1 H 0 1 N Y N Y N Y -9.935 18.678 10.189 3.079 -1.344 -0.842 HC1 PHL 15
PHL HC2 H2 H 0 1 N Y N Y N Y -11.250 19.122 9.046 3.269 0.394 -1.178 HC2 PHL 16
PHL HO HO H 0 1 N N N Y N Y -11.106 19.413 11.760 4.869 -0.385 0.416 HO PHL 17
PHL HB2 HB1 H 0 1 N N N N N N -9.797 16.345 11.017 0.758 0.412 -1.817 HB2 PHL 18
PHL HB3 HB2 H 0 1 N N N N N N -11.256 16.827 12.020 0.742 -1.327 -1.437 HB3 PHL 19
PHL HD1 HD1 H 0 1 N N N N N N -13.330 15.396 11.810 -0.923 1.900 -0.894 HD1 PHL 20
PHL HD2 HD2 H 0 1 N N N N N N -9.523 14.127 10.380 -0.966 -2.269 0.005 HD2 PHL 21
PHL HE1 HE1 H 0 1 N N N N N N -14.145 13.090 11.741 -3.214 2.113 -0.017 HE1 PHL 22
PHL HE2 HE2 H 0 1 N N N N N N -10.281 11.807 10.435 -3.257 -2.056 0.882 HE2 PHL 23
PHL HZ HZ H 0 1 N N N N N N -12.564 11.257 11.156 -4.379 0.136 0.875 HZ PHL 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PHL N CA SING N N 1
PHL N H SING N N 2
PHL N H2 SING N N 3
PHL CA C SING N N 4
PHL CA CB SING N N 5
PHL CA HA SING N N 6
PHL C O SING N N 7
PHL C HC1 SING N N 8
PHL C HC2 SING N N 9
PHL O HO SING N N 10
PHL CB CG SING N N 11
PHL CB HB2 SING N N 12
PHL CB HB3 SING N N 13
PHL CG CD1 DOUB Y N 14
PHL CG CD2 SING Y N 15
PHL CD1 CE1 SING Y N 16
PHL CD1 HD1 SING N N 17
PHL CD2 CE2 DOUB Y N 18
PHL CD2 HD2 SING N N 19
PHL CE1 CZ DOUB Y N 20
PHL CE1 HE1 SING N N 21
PHL CE2 CZ SING Y N 22
PHL CE2 HE2 SING N N 23
PHL CZ HZ SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PHL SMILES ACDLabs 10.04 OCC(N)Cc1ccccc1
PHL SMILES_CANONICAL CACTVS 3.341 N[C@H](CO)Cc1ccccc1
PHL SMILES CACTVS 3.341 N[CH](CO)Cc1ccccc1
PHL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](CO)N
PHL SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(CO)N
PHL InChI InChI 1.03 InChI=1S/C9H13NO/c10-9(7-11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2/t9-/m0/s1
PHL InChIKey InChI 1.03 STVVMTBJNDTZBF-VIFPVBQESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PHL "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-2-amino-3-phenylpropan-1-ol
PHL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-2-amino-3-phenyl-propan-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PHL 'Create component' 1999-07-08 RCSB
PHL 'Modify descriptor' 2011-06-04 RCSB
PHL 'Modify synonyms' 2018-10-01 RCSB
PHL 'Modify synonyms' 2021-03-01 PDBE
PHL 'Modify backbone' 2023-11-03 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PHL
_pdbx_chem_comp_synonyms.name "bound form of Phenylalaninal"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id PHL
_pdbe_chem_comp_drugbank_details.drugbank_id DB04484
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name L-phenylalaninol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 3182-95-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id PHL
_pdbe_chem_comp_synonyms.name 'bound form of Phenylalaninal'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PHL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04484
_pdbe_chem_comp_drugbank_classification.parent 'Amphetamines and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as amphetamines and derivatives. These are organic compounds containing or derived from 1-phenylpropan-2-amine.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PHL N N 5.598 3.143 1
PHL CA C 5.598 1.643 2
PHL C C 6.897 0.892 3
PHL O O 8.196 1.643 4
PHL CB C 4.299 0.892 5
PHL CG C 4.299 -0.608 6
PHL CD1 C 3.000 -1.357 7
PHL CD2 C 5.598 -1.357 8
PHL CE1 C 3.000 -2.857 9
PHL CE2 C 5.598 -2.857 10
PHL CZ C 4.299 -3.607 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PHL CA N SINGLE BEGINDASH 1
PHL CA C SINGLE NONE 2
PHL CA CB SINGLE NONE 3
PHL C O SINGLE NONE 4
PHL CB CG SINGLE NONE 5
PHL CG CD1 DOUBLE NONE 6
PHL CG CD2 SINGLE NONE 7
PHL CD1 CE1 SINGLE NONE 8
PHL CD2 CE2 DOUBLE NONE 9
PHL CE1 CZ DOUBLE NONE 10
PHL CE2 CZ SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PHL MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PHL phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PHL CG S1 1
PHL CD1 S1 1
PHL CD2 S1 1
PHL CE1 S1 1
PHL CE2 S1 1
PHL CZ S1 1
PHL CG F1 1
PHL CD1 F1 1
PHL CE1 F1 1
PHL CZ F1 1
PHL CE2 F1 1
PHL CD2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PHL
_pdbe_chem_comp_rdkit_properties.exactmw 151.100
_pdbe_chem_comp_rdkit_properties.amw 151.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.128
_pdbe_chem_comp_rdkit_properties.tpsa 46.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.494
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.941
_pdbe_chem_comp_rdkit_properties.chi0v 5.355
_pdbe_chem_comp_rdkit_properties.chi1v 2.678
_pdbe_chem_comp_rdkit_properties.chi2v 0.840
_pdbe_chem_comp_rdkit_properties.chi3v 0.840
_pdbe_chem_comp_rdkit_properties.chi4v 0.456
_pdbe_chem_comp_rdkit_properties.chi0n 18.355
_pdbe_chem_comp_rdkit_properties.chi1n 8.980
_pdbe_chem_comp_rdkit_properties.chi2n 0.840
_pdbe_chem_comp_rdkit_properties.chi3n 0.840
_pdbe_chem_comp_rdkit_properties.chi4n 0.456
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.860
_pdbe_chem_comp_rdkit_properties.kappa1 1.582
_pdbe_chem_comp_rdkit_properties.kappa2 4.109
_pdbe_chem_comp_rdkit_properties.kappa3 2.699
_pdbe_chem_comp_rdkit_properties.Phi 0.591
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PHL UniChem ChEMBL CHEMBL1235287
PHL UniChem DrugBank DB04484
PHL UniChem PDBe PHL
PHL UniChem 'Guide to Pharmacology' 4752
PHL UniChem ChEBI 45086
PHL UniChem fdasrs 9GE9QOP0ET
PHL UniChem LINCS LSM-19018
PHL UniChem Nikkaji J50.948E
PHL UniChem BindingDb 50367058
PHL UniChem BRENDA 106428
PHL UniChem BRENDA 224811
PHL UniChem BRENDA 99686
PHL UniChem ChemicalBook CB6460985
PHL UniChem 'Probes And Drugs' PD000925
PHL UniChem ZINC ZINC000006731693
PHL UniChem eMolecules 486927
PHL UniChem SureChEMBL SCHEMBL81769
PHL UniChem 'PubChem TPHARMA' 16154110
PHL UniChem PubChem 447213
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PHL N -1.410 1.522 0.031 ETKDGv3 1
PHL CA -1.554 0.070 -0.110 ETKDGv3 2
PHL C -3.008 -0.359 0.171 ETKDGv3 3
PHL O -3.185 -1.727 -0.083 ETKDGv3 4
PHL CB -0.570 -0.653 0.831 ETKDGv3 5
PHL CG 0.860 -0.312 0.500 ETKDGv3 6
PHL CD1 1.507 -0.955 -0.489 ETKDGv3 7
PHL CD2 1.551 0.780 1.232 ETKDGv3 8
PHL CE1 2.900 -0.592 -0.827 ETKDGv3 9
PHL CE2 2.811 1.108 0.920 ETKDGv3 10
PHL CZ 3.519 0.387 -0.158 ETKDGv3 11
PHL H -1.753 1.815 0.975 ETKDGv3 12
PHL H2 -2.013 1.992 -0.683 ETKDGv3 13
PHL HA -1.307 -0.207 -1.160 ETKDGv3 14
PHL HC1 -3.262 -0.158 1.234 ETKDGv3 15
PHL HC2 -3.710 0.235 -0.458 ETKDGv3 16
PHL HO -3.201 -1.833 -1.070 ETKDGv3 17
PHL HB2 -0.787 -0.376 1.886 ETKDGv3 18
PHL HB3 -0.709 -1.753 0.751 ETKDGv3 19
PHL HD1 1.017 -1.741 -1.050 ETKDGv3 20
PHL HD2 1.037 1.316 2.020 ETKDGv3 21
PHL HE1 3.416 -1.119 -1.620 ETKDGv3 22
PHL HE2 3.314 1.904 1.455 ETKDGv3 23
PHL HZ 4.538 0.655 -0.405 ETKDGv3 24
#