data_PM7
#
_chem_comp.id PM7
_chem_comp.name
(5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "premalbrancheamide E"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-17
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 335.443
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PM7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WGS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PM7 N N1 N 0 1 N N N N N N 66.324 23.004 88.090 -1.755 1.675 1.010 N PM7 1
PM7 C C1 C 0 1 N N N N N N 65.634 23.214 89.219 -3.020 1.175 0.804 C PM7 2
PM7 O O1 O 0 1 N N N N N N 66.067 23.856 90.164 -4.038 1.766 1.096 O PM7 3
PM7 C1 C2 C 0 1 N N S N N N 64.255 22.551 89.194 -2.993 -0.202 0.168 C1 PM7 4
PM7 C10 C3 C 0 1 Y N N N N N 65.975 19.882 80.909 5.802 0.446 -0.546 C10 PM7 5
PM7 C11 C4 C 0 1 Y N N N N N 65.315 19.155 81.888 5.062 -0.723 -0.482 C11 PM7 6
PM7 C12 C5 C 0 1 Y N N N N N 65.382 19.607 83.197 3.705 -0.595 -0.195 C12 PM7 7
PM7 C13 C6 C 0 1 Y N N N N N 65.178 19.900 85.410 1.525 -0.883 0.227 C13 PM7 8
PM7 C14 C7 C 0 1 N N N N N N 64.728 19.688 86.839 0.185 -1.544 0.445 C14 PM7 9
PM7 C15 C8 C 0 1 N N N N N N 63.191 19.674 86.816 -0.413 -1.942 -0.906 C15 PM7 10
PM7 C16 C9 C 0 1 N N N N N N 65.198 18.305 87.316 0.366 -2.792 1.311 C16 PM7 11
PM7 C17 C10 C 0 1 N N N N N N 64.357 22.973 86.747 -1.054 0.598 -1.053 C17 PM7 12
PM7 C18 C11 C 0 1 N N N N N N 63.029 24.319 88.369 -3.336 0.506 -2.021 C18 PM7 13
PM7 C19 C12 C 0 1 N N N N N N 62.449 24.074 89.745 -4.660 -0.178 -1.597 C19 PM7 14
PM7 C2 C13 C 0 1 N N N N N N 64.513 21.037 89.047 -2.187 -1.138 1.055 C2 PM7 15
PM7 C20 C14 C 0 1 N N N N N N 63.334 22.985 90.348 -4.410 -0.670 -0.149 C20 PM7 16
PM7 C3 C15 C 0 1 N N S N N N 65.315 20.814 87.751 -0.758 -0.560 1.153 C3 PM7 17
PM7 C4 C16 C 0 1 N N S N N N 65.643 22.200 87.067 -0.715 0.796 0.429 C4 PM7 18
PM7 C5 C17 C 0 1 N N N N N N 66.563 21.963 85.862 0.648 1.457 0.592 C5 PM7 19
PM7 C6 C18 C 0 1 Y N N N N N 65.961 20.927 84.965 1.728 0.451 0.292 C6 PM7 20
PM7 C7 C19 C 0 1 Y N N N N N 66.097 20.767 83.546 3.131 0.684 0.021 C7 PM7 21
PM7 C8 C20 C 0 1 Y N N N N N 66.745 21.480 82.543 3.902 1.848 -0.050 C8 PM7 22
PM7 C9 C21 C 0 1 Y N N N N N 66.680 21.033 81.233 5.236 1.692 -0.336 C9 PM7 23
PM7 N1 N2 N 0 1 Y N N N N N 64.824 19.089 84.353 2.707 -1.516 -0.061 N1 PM7 24
PM7 N2 N3 N 0 1 N N N N N N 63.553 23.009 87.970 -2.321 -0.113 -1.152 N2 PM7 25
PM7 H1 H1 H 0 1 N N N N N N 67.244 23.371 87.953 -1.568 2.504 1.477 H1 PM7 26
PM7 H2 H2 H 0 1 N N N N N N 65.940 19.549 79.882 6.858 0.383 -0.767 H2 PM7 27
PM7 H3 H3 H 0 1 N N N N N N 64.764 18.261 81.638 5.516 -1.689 -0.648 H3 PM7 28
PM7 H4 H4 H 0 1 N N N N N N 62.810 19.522 87.837 -0.221 -2.999 -1.091 H4 PM7 29
PM7 H5 H5 H 0 1 N N N N N N 62.822 20.634 86.426 -1.489 -1.766 -0.893 H5 PM7 30
PM7 H6 H6 H 0 1 N N N N N N 62.842 18.856 86.169 0.043 -1.346 -1.696 H6 PM7 31
PM7 H7 H7 H 0 1 N N N N N N 64.874 18.145 88.355 0.791 -2.508 2.273 H7 PM7 32
PM7 H8 H8 H 0 1 N N N N N N 64.762 17.527 86.672 -0.601 -3.269 1.468 H8 PM7 33
PM7 H9 H9 H 0 1 N N N N N N 66.295 18.252 87.262 1.037 -3.489 0.808 H9 PM7 34
PM7 H10 H10 H 0 1 N N N N N N 64.603 23.997 86.428 -1.140 1.569 -1.541 H10 PM7 35
PM7 H11 H11 H 0 1 N N N N N N 63.801 22.463 85.946 -0.269 0.014 -1.532 H11 PM7 36
PM7 H12 H12 H 0 1 N N N N N N 63.835 25.067 88.411 -3.119 0.302 -3.069 H12 PM7 37
PM7 H13 H13 H 0 1 N N N N N N 62.250 24.658 87.670 -3.387 1.580 -1.844 H13 PM7 38
PM7 H14 H14 H 0 1 N N N N N N 62.491 24.990 90.353 -5.480 0.540 -1.617 H14 PM7 39
PM7 H15 H15 H 0 1 N N N N N N 61.407 23.731 89.671 -4.877 -1.021 -2.252 H15 PM7 40
PM7 H16 H16 H 0 1 N N N N N N 63.555 20.499 88.990 -2.636 -1.187 2.047 H16 PM7 41
PM7 H17 H17 H 0 1 N N N N N N 65.089 20.671 89.910 -2.156 -2.133 0.612 H17 PM7 42
PM7 H18 H18 H 0 1 N N N N N N 62.725 22.139 90.698 -4.472 -1.757 -0.100 H18 PM7 43
PM7 H19 H19 H 0 1 N N N N N N 63.924 23.384 91.187 -5.124 -0.215 0.537 H19 PM7 44
PM7 H20 H20 H 0 1 N N N N N N 66.291 20.429 88.082 -0.469 -0.451 2.198 H20 PM7 45
PM7 H21 H21 H 0 1 N N N N N N 67.545 21.616 86.215 0.730 2.297 -0.098 H21 PM7 46
PM7 H22 H22 H 0 1 N N N N N N 66.685 22.903 85.304 0.758 1.816 1.616 H22 PM7 47
PM7 H23 H23 H 0 1 N N N N N N 67.296 22.377 82.784 3.469 2.824 0.112 H23 PM7 48
PM7 H24 H24 H 0 1 N N N N N N 67.184 21.587 80.455 5.864 2.569 -0.399 H24 PM7 49
PM7 H25 H25 H 0 1 N N N N N N 64.259 18.266 84.411 2.816 -2.475 -0.156 H25 PM7 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PM7 C10 C9 DOUB Y N 1
PM7 C10 C11 SING Y N 2
PM7 C9 C8 SING Y N 3
PM7 C11 C12 DOUB Y N 4
PM7 C8 C7 DOUB Y N 5
PM7 C12 C7 SING Y N 6
PM7 C12 N1 SING Y N 7
PM7 C7 C6 SING Y N 8
PM7 N1 C13 SING Y N 9
PM7 C6 C13 DOUB Y N 10
PM7 C6 C5 SING N N 11
PM7 C13 C14 SING N N 12
PM7 C5 C4 SING N N 13
PM7 C17 C4 SING N N 14
PM7 C17 N2 SING N N 15
PM7 C15 C14 SING N N 16
PM7 C14 C16 SING N N 17
PM7 C14 C3 SING N N 18
PM7 C4 C3 SING N N 19
PM7 C4 N SING N N 20
PM7 C3 C2 SING N N 21
PM7 N2 C18 SING N N 22
PM7 N2 C1 SING N N 23
PM7 N C SING N N 24
PM7 C18 C19 SING N N 25
PM7 C2 C1 SING N N 26
PM7 C1 C SING N N 27
PM7 C1 C20 SING N N 28
PM7 C O DOUB N N 29
PM7 C19 C20 SING N N 30
PM7 N H1 SING N N 31
PM7 C10 H2 SING N N 32
PM7 C11 H3 SING N N 33
PM7 C15 H4 SING N N 34
PM7 C15 H5 SING N N 35
PM7 C15 H6 SING N N 36
PM7 C16 H7 SING N N 37
PM7 C16 H8 SING N N 38
PM7 C16 H9 SING N N 39
PM7 C17 H10 SING N N 40
PM7 C17 H11 SING N N 41
PM7 C18 H12 SING N N 42
PM7 C18 H13 SING N N 43
PM7 C19 H14 SING N N 44
PM7 C19 H15 SING N N 45
PM7 C2 H16 SING N N 46
PM7 C2 H17 SING N N 47
PM7 C20 H18 SING N N 48
PM7 C20 H19 SING N N 49
PM7 C3 H20 SING N N 50
PM7 C5 H21 SING N N 51
PM7 C5 H22 SING N N 52
PM7 C8 H23 SING N N 53
PM7 C9 H24 SING N N 54
PM7 N1 H25 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PM7 SMILES ACDLabs 12.01 N2C(=O)C61CCCN1CC23C(C(c5c(C3)c4c(cccc4)n5)(C)C)C6
PM7 InChI InChI 1.03 InChI=1S/C21H25N3O/c1-19(2)16-11-21-8-5-9-24(21)12-20(16,23-18(21)25)10-14-13-6-3-4-7-15(13)22-17(14)19/h3-4,6-7,16,22H,5,8-12H2,1-2H3,(H,23,25)/t16-,20+,21-/m0/s1
PM7 InChIKey InChI 1.03 LBTZXCFDJFHPMI-DQLDELGASA-N
PM7 SMILES_CANONICAL CACTVS 3.385 CC1(C)[C@@H]2C[C@]34CCCN3C[C@@]2(Cc5c1[nH]c6ccccc56)NC4=O
PM7 SMILES CACTVS 3.385 CC1(C)[CH]2C[C]34CCCN3C[C]2(Cc5c1[nH]c6ccccc56)NC4=O
PM7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC1(c2c(c3ccccc3[nH]2)C[C@]45[C@H]1C[C@@]6(CCCN6C4)C(=O)N5)C
PM7 SMILES "OpenEye OEToolkits" 2.0.6 CC1(c2c(c3ccccc3[nH]2)CC45C1CC6(CCCN6C4)C(=O)N5)C
#
_pdbx_chem_comp_identifier.comp_id PM7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
(5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PM7 'Create component' 2017-07-17 RCSB
PM7 'Initial release' 2017-08-16 RCSB
PM7 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PM7
_pdbx_chem_comp_synonyms.name "premalbrancheamide E"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id PM7
_pdbe_chem_comp_synonyms.name 'premalbrancheamide E'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PM7 N N 7.138 2.002 1
PM7 C C 7.138 3.203 2
PM7 O O 6.077 4.263 3
PM7 C1 C 7.738 4.103 4
PM7 C10 C 4.801 -5.715 5
PM7 C11 C 3.861 -4.398 6
PM7 C12 C 4.543 -2.931 7
PM7 C13 C 5.062 -0.470 8
PM7 C14 C 5.074 1.092 9
PM7 C15 C 3.574 1.110 10
PM7 C16 C 4.339 2.400 11
PM7 C17 C 9.037 1.853 12
PM7 C18 C 10.142 4.353 13
PM7 C19 C 9.535 5.715 14
PM7 C2 C 6.439 3.353 15
PM7 C20 C 8.051 5.560 16
PM7 C3 C 6.439 1.853 17
PM7 C4 C 7.738 1.103 18
PM7 C5 C 7.762 -0.460 19
PM7 C6 C 6.415 -1.251 20
PM7 C7 C 6.088 -2.770 21
PM7 C8 C 7.058 -4.065 22
PM7 C9 C 6.410 -5.547 23
PM7 N1 N 3.910 -1.512 24
PM7 N2 N 9.037 3.353 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PM7 C10 C9 DOUBLE NONE 1
PM7 C10 C11 SINGLE NONE 2
PM7 C9 C8 SINGLE NONE 3
PM7 C11 C12 DOUBLE NONE 4
PM7 C8 C7 DOUBLE NONE 5
PM7 C12 C7 SINGLE NONE 6
PM7 C12 N1 SINGLE NONE 7
PM7 C7 C6 SINGLE NONE 8
PM7 N1 C13 SINGLE NONE 9
PM7 C6 C13 DOUBLE NONE 10
PM7 C6 C5 SINGLE NONE 11
PM7 C13 C14 SINGLE NONE 12
PM7 C4 C5 SINGLE BEGINWEDGE 13
PM7 C17 C4 SINGLE NONE 14
PM7 C17 N2 SINGLE NONE 15
PM7 C15 C14 SINGLE NONE 16
PM7 C14 C16 SINGLE NONE 17
PM7 C14 C3 SINGLE NONE 18
PM7 C4 C3 SINGLE NONE 19
PM7 C4 N SINGLE NONE 20
PM7 C3 C2 SINGLE NONE 21
PM7 N2 C18 SINGLE NONE 22
PM7 N2 C1 SINGLE NONE 23
PM7 N C SINGLE NONE 24
PM7 C18 C19 SINGLE NONE 25
PM7 C2 C1 SINGLE NONE 26
PM7 C1 C SINGLE NONE 27
PM7 C1 C20 SINGLE BEGINWEDGE 28
PM7 C O DOUBLE NONE 29
PM7 C19 C20 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PM7 MurckoScaffold S1 scaffold 'O=C1N[C@@]23Cc4c([nH]c5ccccc45)C[C@@H]2C[C@@]12CCCN2C3' InChI=1S/C19H21N3O/c23-17-19-6-3-7-22(19)11-18(21-17)10-14-13-4-1-2-5-15(13)20-16(14)8-12(18)9-19/h1-2,4-5,12,20H,3,6-11H2,(H,21,23)/t12-,18-,19+/m1/s1 MEJROYYSRSXENE-DPMMWBKBSA-N
PM7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
PM7 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
PM7 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PM7 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PM7 piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
PM7 pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
PM7 Z1741785925 F7 fragment CC1CCNC(C(N)=O)C1 InChI=1S/C7H14N2O/c1-5-2-3-9-6(4-5)7(8)10/h5-6,9H,2-4H2,1H3,(H2,8,10) RIOBEGOHZRAHCD-UHFFFAOYSA-N
PM7 Z1741815708 F8 fragment CC1(C)CCCN1CCN InChI=1S/C8H18N2/c1-8(2)4-3-6-10(8)7-5-9/h3-7,9H2,1-2H3 ZSHAGSDVWLLMSY-UHFFFAOYSA-N
PM7 Z1741966630 F9 fragment CC(C)(N)CN1CCCC1 InChI=1S/C8H18N2/c1-8(2,9)7-10-5-3-4-6-10/h3-7,9H2,1-2H3 MWBKOGAZOXPSCI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PM7 N S1 1
PM7 C S1 1
PM7 O S1 1
PM7 C1 S1 1
PM7 C10 S1 1
PM7 C11 S1 1
PM7 C12 S1 1
PM7 C13 S1 1
PM7 C14 S1 1
PM7 C17 S1 1
PM7 C18 S1 1
PM7 C19 S1 1
PM7 C2 S1 1
PM7 C20 S1 1
PM7 C3 S1 1
PM7 C4 S1 1
PM7 C5 S1 1
PM7 C6 S1 1
PM7 C7 S1 1
PM7 C8 S1 1
PM7 C9 S1 1
PM7 N1 S1 1
PM7 N2 S1 1
PM7 N F1 1
PM7 C F1 1
PM7 O F1 1
PM7 C1 F1 1
PM7 C12 F2 1
PM7 C7 F2 1
PM7 C6 F2 1
PM7 C13 F2 1
PM7 N1 F2 1
PM7 C8 F2 1
PM7 C9 F2 1
PM7 C10 F2 1
PM7 C11 F2 1
PM7 O F3 1
PM7 C F3 1
PM7 C1 F3 1
PM7 N2 F3 1
PM7 C10 F4 1
PM7 C9 F4 1
PM7 C8 F4 1
PM7 C7 F4 1
PM7 C12 F4 1
PM7 C11 F4 1
PM7 N F5 1
PM7 C4 F5 1
PM7 C17 F5 1
PM7 N2 F5 1
PM7 C1 F5 1
PM7 C F5 1
PM7 C12 F6 1
PM7 C7 F6 1
PM7 C6 F6 1
PM7 C13 F6 1
PM7 N1 F6 1
PM7 C14 F7 1
PM7 C3 F7 1
PM7 C4 F7 1
PM7 C17 F7 1
PM7 N2 F7 1
PM7 C1 F7 1
PM7 C2 F7 1
PM7 C F7 1
PM7 O F7 1
PM7 N F7 1
PM7 C F8 1
PM7 C1 F8 1
PM7 C2 F8 1
PM7 C20 F8 1
PM7 C19 F8 1
PM7 C18 F8 1
PM7 N2 F8 1
PM7 C17 F8 1
PM7 C4 F8 1
PM7 N F8 1
PM7 C3 F9 1
PM7 C4 F9 1
PM7 C5 F9 1
PM7 N F9 1
PM7 C17 F9 1
PM7 N2 F9 1
PM7 C18 F9 1
PM7 C19 F9 1
PM7 C20 F9 1
PM7 C1 F9 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PM7
_pdbe_chem_comp_rdkit_properties.exactmw 335.200
_pdbe_chem_comp_rdkit_properties.amw 335.451
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 2
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 182.755
_pdbe_chem_comp_rdkit_properties.tpsa 48.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.187
_pdbe_chem_comp_rdkit_properties.CrippenMR 94.809
_pdbe_chem_comp_rdkit_properties.chi0v 12.250
_pdbe_chem_comp_rdkit_properties.chi1v 7.269
_pdbe_chem_comp_rdkit_properties.chi2v 4.681
_pdbe_chem_comp_rdkit_properties.chi3v 4.681
_pdbe_chem_comp_rdkit_properties.chi4v 3.551
_pdbe_chem_comp_rdkit_properties.chi0n 37.250
_pdbe_chem_comp_rdkit_properties.chi1n 19.664
_pdbe_chem_comp_rdkit_properties.chi2n 4.681
_pdbe_chem_comp_rdkit_properties.chi3n 4.681
_pdbe_chem_comp_rdkit_properties.chi4n 3.551
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 4.036
_pdbe_chem_comp_rdkit_properties.kappa2 4.118
_pdbe_chem_comp_rdkit_properties.kappa3 1.480
_pdbe_chem_comp_rdkit_properties.Phi 0.665
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PM7 UniChem ChEMBL CHEMBL461324
PM7 UniChem PDBe PM7
PM7 UniChem ZINC ZINC000040392159
PM7 UniChem PubChem 44562783
PM7 UniChem Nikkaji J2.668.833G
PM7 UniChem Nikkaji J2.055.680C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PM7 N -1.385 2.292 -0.013 ETKDGv3 1
PM7 C -2.710 1.921 0.367 ETKDGv3 2
PM7 O -3.608 2.781 0.570 ETKDGv3 3
PM7 C1 -2.913 0.420 0.521 ETKDGv3 4
PM7 C10 5.706 -0.270 -2.209 ETKDGv3 5
PM7 C11 5.023 -1.132 -1.205 ETKDGv3 6
PM7 C12 3.805 -0.762 -0.805 ETKDGv3 7
PM7 C13 1.793 -0.563 0.216 ETKDGv3 8
PM7 C14 0.607 -0.867 1.124 ETKDGv3 9
PM7 C15 0.010 -2.233 0.690 ETKDGv3 10
PM7 C16 1.142 -1.025 2.565 ETKDGv3 11
PM7 C17 -1.260 0.284 -1.323 ETKDGv3 12
PM7 C18 -3.705 -0.200 -1.592 ETKDGv3 13
PM7 C19 -4.918 -0.199 -0.653 ETKDGv3 14
PM7 C2 -1.899 -0.030 1.598 ETKDGv3 15
PM7 C20 -4.364 0.012 0.757 ETKDGv3 16
PM7 C3 -0.437 0.329 1.107 ETKDGv3 17
PM7 C4 -0.512 1.134 -0.252 ETKDGv3 18
PM7 C5 0.877 1.594 -0.721 ETKDGv3 19
PM7 C6 1.871 0.481 -0.629 ETKDGv3 20
PM7 C7 3.160 0.421 -1.307 ETKDGv3 21
PM7 C8 3.743 1.223 -2.201 ETKDGv3 22
PM7 C9 5.101 0.844 -2.679 ETKDGv3 23
PM7 N1 2.966 -1.396 0.144 ETKDGv3 24
PM7 N2 -2.522 -0.254 -0.732 ETKDGv3 25
PM7 H1 -1.097 3.286 -0.154 ETKDGv3 26
PM7 H2 6.694 -0.539 -2.560 ETKDGv3 27
PM7 H3 5.497 -2.022 -0.813 ETKDGv3 28
PM7 H4 0.812 -2.966 0.461 ETKDGv3 29
PM7 H5 -0.630 -2.153 -0.206 ETKDGv3 30
PM7 H6 -0.591 -2.696 1.500 ETKDGv3 31
PM7 H7 1.712 -0.122 2.876 ETKDGv3 32
PM7 H8 0.302 -1.170 3.278 ETKDGv3 33
PM7 H9 1.817 -1.904 2.652 ETKDGv3 34
PM7 H10 -0.627 -0.548 -1.688 ETKDGv3 35
PM7 H11 -1.467 0.925 -2.209 ETKDGv3 36
PM7 H12 -3.717 0.728 -2.207 ETKDGv3 37
PM7 H13 -3.724 -1.085 -2.262 ETKDGv3 38
PM7 H14 -5.614 0.625 -0.923 ETKDGv3 39
PM7 H15 -5.463 -1.167 -0.715 ETKDGv3 40
PM7 H16 -2.038 -1.105 1.808 ETKDGv3 41
PM7 H17 -2.116 0.499 2.553 ETKDGv3 42
PM7 H18 -4.945 0.771 1.323 ETKDGv3 43
PM7 H19 -4.406 -0.951 1.312 ETKDGv3 44
PM7 H20 -0.058 1.083 1.837 ETKDGv3 45
PM7 H21 0.823 1.970 -1.765 ETKDGv3 46
PM7 H22 1.235 2.423 -0.073 ETKDGv3 47
PM7 H23 3.250 2.114 -2.566 ETKDGv3 48
PM7 H24 5.605 1.467 -3.407 ETKDGv3 49
PM7 H25 3.170 -2.267 0.681 ETKDGv3 50
#