data_PNF
#
_chem_comp.id PNF
_chem_comp.name "6-{4-[HYDROXY-(4-NITRO-PHENOXY)-PHOSPHORYL]-BUTYRYLAMINO}-HEXANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H23 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-09-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 402.336
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PNF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1YEJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PNF C1 C1 C 0 1 Y N N N N N 11.724 37.652 61.592 0.997 -0.011 -5.138 C1 PNF 1
PNF C2 C2 C 0 1 Y N N N N N 11.595 38.944 61.099 0.646 1.199 -5.733 C2 PNF 2
PNF C3 C3 C 0 1 Y N N N N N 10.383 39.581 61.241 -0.052 1.210 -6.904 C3 PNF 3
PNF C4 C4 C 0 1 Y N N N N N 9.323 38.924 61.867 -0.420 -0.005 -7.512 C4 PNF 4
PNF C5 C5 C 0 1 Y N N N N N 9.494 37.601 62.356 -0.062 -1.224 -6.904 C5 PNF 5
PNF C6 C6 C 0 1 Y N N N N N 10.722 36.936 62.221 0.641 -1.218 -5.736 C6 PNF 6
PNF P1 P1 P 0 1 N N R N N N 14.213 37.527 62.361 0.608 -0.009 -2.785 P1 PNF 7
PNF O1 O1 O 0 1 N N N N N N 12.946 37.045 61.446 1.692 -0.013 -3.975 O1 PNF 8
PNF O2 O2 O 0 1 N N N N N N 14.446 38.926 62.111 -0.308 1.309 -2.899 O2 PNF 9
PNF O3 O3 O 0 1 N N N N N N 13.965 37.092 63.747 -0.244 -1.214 -2.890 O3 PNF 10
PNF C8 C8 C 0 1 N N N N N N 15.510 36.579 61.756 1.469 -0.012 -1.178 C8 PNF 11
PNF C9 C9 C 0 1 N N N N N N 16.065 37.044 60.476 0.439 -0.008 -0.047 C9 PNF 12
PNF C10 C10 C 0 1 N N N N N N 17.270 36.154 60.214 1.162 -0.011 1.300 C10 PNF 13
PNF C11 C11 C 0 1 N N N N N N 17.624 36.077 58.752 0.148 -0.007 2.414 C11 PNF 14
PNF N2 N2 N 0 1 N N N N N N 17.329 34.903 58.052 0.557 -0.009 3.698 N2 PNF 15
PNF O6 O6 O 0 1 N N N N N N 18.167 37.095 58.246 -1.036 -0.002 2.155 O6 PNF 16
PNF C12 C12 C 0 1 N N N N N N 17.590 34.690 56.712 -0.429 -0.004 4.782 C12 PNF 17
PNF C13 C13 C 0 1 N N N N N N 16.589 33.739 56.035 0.293 -0.007 6.130 C13 PNF 18
PNF C14 C14 C 0 1 N N N N N N 17.231 32.921 54.867 -0.736 -0.003 7.261 C14 PNF 19
PNF C15 C15 C 0 1 N N N N N N 17.047 31.385 54.981 -0.013 -0.006 8.609 C15 PNF 20
PNF C16 C16 C 0 1 N N N N N N 16.760 30.638 53.667 -1.043 -0.002 9.741 C16 PNF 21
PNF C17 C17 C 0 1 N N N N N N 15.774 29.452 53.768 -0.331 -0.005 11.069 C17 PNF 22
PNF O7 O7 O 0 1 N N N N N N 15.646 28.879 54.789 0.876 -0.010 11.107 O7 PNF 23
PNF O8 O8 O 0 1 N N N N N N 15.099 29.045 52.837 -1.038 -0.002 12.210 O8 PNF 24
PNF N1 N1 N 1 1 N N N N N N 8.013 39.606 62.026 -1.108 -0.002 -8.662 N1 PNF 25
PNF O4 O4 O 0 1 N N N N N N 7.850 40.794 61.711 -1.425 -1.055 -9.185 O4 PNF 26
PNF O5 O5 O -1 1 N N N N N N 7.062 38.983 62.494 -1.417 1.053 -9.185 O5 PNF 27
PNF H21 1H2 H 0 1 N N N N N N 12.438 39.454 60.604 0.929 2.131 -5.266 H21 PNF 28
PNF H31 1H3 H 0 1 N N N N N N 10.262 40.607 60.856 -0.324 2.149 -7.364 H31 PNF 29
PNF H51 1H5 H 0 1 N N N N N N 8.656 37.079 62.850 -0.341 -2.160 -7.364 H51 PNF 30
PNF H61 1H6 H 0 1 N N N N N N 10.890 35.909 62.588 0.916 -2.152 -5.269 H61 PNF 31
PNF HO21 1HO2 H 0 0 N N N N N N 15.182 39.206 62.642 0.284 2.069 -2.826 HO21 PNF 32
PNF H81 1H8 H 0 1 N N N N N N 16.317 36.494 62.520 2.098 0.874 -1.101 H81 PNF 33
PNF H82 2H8 H 0 1 N N N N N N 15.204 35.509 61.679 2.090 -0.905 -1.101 H82 PNF 34
PNF H91 1H9 H 0 1 N N N N N N 15.324 37.055 59.642 -0.188 -0.896 -0.125 H91 PNF 35
PNF H92 2H9 H 0 1 N N N N N N 16.298 38.134 60.456 -0.181 0.884 -0.125 H92 PNF 36
PNF H101 1H10 H 0 0 N N N N N N 18.146 36.476 60.822 1.791 0.875 1.377 H101 PNF 37
PNF H102 2H10 H 0 0 N N N N N N 17.118 35.136 60.644 1.783 -0.904 1.378 H102 PNF 38
PNF HN21 1HN2 H 0 0 N N N N N N 16.886 34.138 58.561 1.504 -0.013 3.906 HN21 PNF 39
PNF H121 1H12 H 0 0 N N N N N N 17.647 35.658 56.162 -1.057 -0.892 4.704 H121 PNF 40
PNF H122 2H12 H 0 0 N N N N N N 18.635 34.331 56.565 -1.050 0.887 4.704 H122 PNF 41
PNF H131 1H13 H 0 0 N N N N N N 16.111 33.062 56.781 0.922 0.879 6.207 H131 PNF 42
PNF H132 2H13 H 0 0 N N N N N N 15.684 34.291 55.687 0.914 -0.900 6.207 H132 PNF 43
PNF H141 1H14 H 0 0 N N N N N N 16.852 33.285 53.883 -1.364 -0.890 7.184 H141 PNF 44
PNF H142 2H14 H 0 0 N N N N N N 18.311 33.176 54.762 -1.357 0.889 7.184 H142 PNF 45
PNF H151 1H15 H 0 0 N N N N N N 17.933 30.934 55.485 0.615 0.880 8.687 H151 PNF 46
PNF H152 2H15 H 0 0 N N N N N N 16.252 31.154 55.728 0.607 -0.899 8.687 H152 PNF 47
PNF H161 1H16 H 0 0 N N N N N N 16.410 31.357 52.890 -1.671 -0.889 9.663 H161 PNF 48
PNF H162 2H16 H 0 0 N N N N N N 17.717 30.297 53.207 -1.664 0.890 9.663 H162 PNF 49
PNF HO81 1HO8 H 0 0 N N N N N N 14.493 28.316 52.899 -0.581 -0.004 13.062 HO81 PNF 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PNF C1 C2 DOUB Y N 1
PNF C1 C6 SING Y N 2
PNF C1 O1 SING N N 3
PNF C2 C3 SING Y N 4
PNF C2 H21 SING N N 5
PNF C3 C4 DOUB Y N 6
PNF C3 H31 SING N N 7
PNF C4 C5 SING Y N 8
PNF C4 N1 SING N N 9
PNF C5 C6 DOUB Y N 10
PNF C5 H51 SING N N 11
PNF C6 H61 SING N N 12
PNF P1 O1 SING N N 13
PNF P1 O2 SING N N 14
PNF P1 O3 DOUB N N 15
PNF P1 C8 SING N N 16
PNF O2 HO21 SING N N 17
PNF C8 C9 SING N N 18
PNF C8 H81 SING N N 19
PNF C8 H82 SING N N 20
PNF C9 C10 SING N N 21
PNF C9 H91 SING N N 22
PNF C9 H92 SING N N 23
PNF C10 C11 SING N N 24
PNF C10 H101 SING N N 25
PNF C10 H102 SING N N 26
PNF C11 N2 SING N N 27
PNF C11 O6 DOUB N N 28
PNF N2 C12 SING N N 29
PNF N2 HN21 SING N N 30
PNF C12 C13 SING N N 31
PNF C12 H121 SING N N 32
PNF C12 H122 SING N N 33
PNF C13 C14 SING N N 34
PNF C13 H131 SING N N 35
PNF C13 H132 SING N N 36
PNF C14 C15 SING N N 37
PNF C14 H141 SING N N 38
PNF C14 H142 SING N N 39
PNF C15 C16 SING N N 40
PNF C15 H151 SING N N 41
PNF C15 H152 SING N N 42
PNF C16 C17 SING N N 43
PNF C16 H161 SING N N 44
PNF C16 H162 SING N N 45
PNF C17 O7 DOUB N N 46
PNF C17 O8 SING N N 47
PNF O8 HO81 SING N N 48
PNF N1 O4 DOUB N N 49
PNF N1 O5 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PNF SMILES ACDLabs 10.04 O=P(Oc1ccc(cc1)[N+]([O-])=O)(O)CCCC(=O)NCCCCCC(=O)O
PNF SMILES_CANONICAL CACTVS 3.341 OC(=O)CCCCCNC(=O)CCC[P@](O)(=O)Oc1ccc(cc1)[N+]([O-])=O
PNF SMILES CACTVS 3.341 OC(=O)CCCCCNC(=O)CCC[P](O)(=O)Oc1ccc(cc1)[N+]([O-])=O
PNF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1[N+](=O)[O-])O[P@@](=O)(CCCC(=O)NCCCCCC(=O)O)O
PNF SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1[N+](=O)[O-])OP(=O)(CCCC(=O)NCCCCCC(=O)O)O
PNF InChI InChI 1.03 InChI=1S/C16H23N2O8P/c19-15(17-11-3-1-2-6-16(20)21)5-4-12-27(24,25)26-14-9-7-13(8-10-14)18(22)23/h7-10H,1-6,11-12H2,(H,17,19)(H,20,21)(H,24,25)
PNF InChIKey InChI 1.03 WYHHVZLGTMCKOR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PNF "SYSTEMATIC NAME" ACDLabs 10.04 "6-({4-[(R)-hydroxy(4-nitrophenoxy)phosphoryl]butanoyl}amino)hexanoic acid"
PNF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-[4-[hydroxy-(4-nitrophenoxy)phosphoryl]butanoylamino]hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PNF 'Create component' 1999-09-14 RCSB
PNF 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PNF
_pdbe_chem_comp_drugbank_details.drugbank_id DB08412
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '6-{4-[HYDROXY-(4-NITRO-PHENOXY)-PHOSPHORYL]-BUTYRYLAMINO}-HEXANOIC ACID'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PNF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08412
_pdbe_chem_comp_drugbank_classification.parent Nitrobenzenes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as nitrobenzenes. These are compounds containing a nitrobenzene moiety, which consists of a benzene ring with a carbon bearing a nitro group.'
#
_pdbe_chem_comp_drugbank_targets.comp_id PNF
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08412
_pdbe_chem_comp_drugbank_targets.name 'Ig gamma-1 chain C region'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P01857
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PNF C1 C 4.299 -5.482 1
PNF C2 C 3.000 -6.232 2
PNF C3 C 3.000 -7.732 3
PNF C4 C 4.299 -8.482 4
PNF C5 C 5.598 -7.732 5
PNF C6 C 5.598 -6.232 6
PNF P1 P 5.598 -3.232 7
PNF O1 O 4.299 -3.982 8
PNF O2 O 4.848 -1.933 9
PNF O3 O 6.348 -4.532 10
PNF C8 C 6.897 -2.482 11
PNF C9 C 6.897 -0.983 12
PNF C10 C 8.196 -0.233 13
PNF C11 C 8.196 1.268 14
PNF N2 N 9.495 2.018 15
PNF O6 O 6.897 2.018 16
PNF C12 C 9.495 3.518 17
PNF C13 C 10.794 4.268 18
PNF C14 C 10.794 5.768 19
PNF C15 C 12.093 6.518 20
PNF C16 C 12.093 8.018 21
PNF C17 C 13.392 8.768 22
PNF O7 O 13.392 10.268 23
PNF O8 O 14.691 8.018 24
PNF N1 N 4.299 -9.982 25
PNF O4 O 3.000 -10.732 26
PNF O5 O 5.598 -10.732 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PNF C1 C2 DOUBLE NONE 1
PNF C1 C6 SINGLE NONE 2
PNF C1 O1 SINGLE NONE 3
PNF C2 C3 SINGLE NONE 4
PNF C3 C4 DOUBLE NONE 5
PNF C4 C5 SINGLE NONE 6
PNF C4 N1 SINGLE NONE 7
PNF C5 C6 DOUBLE NONE 8
PNF P1 O1 SINGLE NONE 9
PNF P1 O2 SINGLE BEGINWEDGE 10
PNF P1 O3 DOUBLE NONE 11
PNF P1 C8 SINGLE NONE 12
PNF C8 C9 SINGLE NONE 13
PNF C9 C10 SINGLE NONE 14
PNF C10 C11 SINGLE NONE 15
PNF C11 N2 SINGLE NONE 16
PNF C11 O6 DOUBLE NONE 17
PNF N2 C12 SINGLE NONE 18
PNF C12 C13 SINGLE NONE 19
PNF C13 C14 SINGLE NONE 20
PNF C14 C15 SINGLE NONE 21
PNF C15 C16 SINGLE NONE 22
PNF C16 C17 SINGLE NONE 23
PNF C17 O7 DOUBLE NONE 24
PNF C17 O8 SINGLE NONE 25
PNF N1 O4 DOUBLE NONE 26
PNF N1 O5 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PNF MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PNF amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
PNF phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PNF C1 S1 1
PNF C2 S1 1
PNF C3 S1 1
PNF C4 S1 1
PNF C5 S1 1
PNF C6 S1 1
PNF N2 F1 1
PNF C11 F1 1
PNF O6 F1 1
PNF C10 F1 1
PNF C1 F2 1
PNF C2 F2 1
PNF C3 F2 1
PNF C4 F2 1
PNF C5 F2 1
PNF C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PNF
_pdbe_chem_comp_rdkit_properties.exactmw 402.119
_pdbe_chem_comp_rdkit_properties.amw 402.340
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 188.317
_pdbe_chem_comp_rdkit_properties.tpsa 156.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.857
_pdbe_chem_comp_rdkit_properties.CrippenMR 95.330
_pdbe_chem_comp_rdkit_properties.chi0v 13.502
_pdbe_chem_comp_rdkit_properties.chi1v 7.666
_pdbe_chem_comp_rdkit_properties.chi2v 2.657
_pdbe_chem_comp_rdkit_properties.chi3v 2.657
_pdbe_chem_comp_rdkit_properties.chi4v 1.543
_pdbe_chem_comp_rdkit_properties.chi0n 35.608
_pdbe_chem_comp_rdkit_properties.chi1n 17.388
_pdbe_chem_comp_rdkit_properties.chi2n 1.848
_pdbe_chem_comp_rdkit_properties.chi3n 1.848
_pdbe_chem_comp_rdkit_properties.chi4n 0.972
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.450
_pdbe_chem_comp_rdkit_properties.kappa1 6.022
_pdbe_chem_comp_rdkit_properties.kappa2 11.303
_pdbe_chem_comp_rdkit_properties.kappa3 10.322
_pdbe_chem_comp_rdkit_properties.Phi 2.521
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PNF UniChem DrugBank DB08412
PNF UniChem PDBe PNF
PNF UniChem ChEBI 45068
PNF UniChem ZINC ZINC000006536225
PNF UniChem 'Probes And Drugs' PD004423
PNF UniChem PubChem 449245
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PNF C1 5.122 0.940 -1.605 ETKDGv3 1
PNF C2 6.377 0.763 -2.039 ETKDGv3 2
PNF C3 7.527 0.965 -1.133 ETKDGv3 3
PNF C4 7.331 1.335 0.146 ETKDGv3 4
PNF C5 5.941 1.540 0.628 ETKDGv3 5
PNF C6 4.901 1.356 -0.194 ETKDGv3 6
PNF P1 2.400 0.777 -2.107 ETKDGv3 7
PNF O1 4.073 0.730 -2.512 ETKDGv3 8
PNF O2 2.025 2.272 -1.404 ETKDGv3 9
PNF O3 1.593 0.607 -3.374 ETKDGv3 10
PNF C8 2.008 -0.589 -0.964 ETKDGv3 11
PNF C9 0.529 -0.565 -0.571 ETKDGv3 12
PNF C10 0.190 -1.734 0.357 ETKDGv3 13
PNF C11 -1.259 -1.695 0.736 ETKDGv3 14
PNF N2 -2.250 -2.219 -0.159 ETKDGv3 15
PNF O6 -1.601 -1.166 1.828 ETKDGv3 16
PNF C12 -3.683 -2.121 0.112 ETKDGv3 17
PNF C13 -4.170 -0.684 -0.118 ETKDGv3 18
PNF C14 -5.701 -0.548 -0.034 ETKDGv3 19
PNF C15 -6.313 -0.928 1.330 ETKDGv3 20
PNF C16 -5.783 -0.109 2.518 ETKDGv3 21
PNF C17 -6.058 1.354 2.358 ETKDGv3 22
PNF O7 -7.210 1.809 2.588 ETKDGv3 23
PNF O8 -5.047 2.206 1.924 ETKDGv3 24
PNF N1 8.446 1.532 1.034 ETKDGv3 25
PNF O4 8.255 1.875 2.219 ETKDGv3 26
PNF O5 9.738 1.347 0.596 ETKDGv3 27
PNF H21 6.560 0.464 -3.064 ETKDGv3 28
PNF H31 8.524 0.808 -1.522 ETKDGv3 29
PNF H51 5.759 1.844 1.651 ETKDGv3 30
PNF H61 3.905 1.524 0.190 ETKDGv3 31
PNF HO21 1.038 2.335 -1.443 ETKDGv3 32
PNF H81 2.250 -1.548 -1.468 ETKDGv3 33
PNF H82 2.639 -0.499 -0.055 ETKDGv3 34
PNF H91 -0.098 -0.630 -1.488 ETKDGv3 35
PNF H92 0.301 0.391 -0.051 ETKDGv3 36
PNF H101 0.410 -2.698 -0.151 ETKDGv3 37
PNF H102 0.815 -1.680 1.275 ETKDGv3 38
PNF HN21 -1.940 -2.716 -1.025 ETKDGv3 39
PNF H121 -3.882 -2.444 1.155 ETKDGv3 40
PNF H122 -4.228 -2.806 -0.573 ETKDGv3 41
PNF H131 -3.856 -0.365 -1.136 ETKDGv3 42
PNF H132 -3.684 0.008 0.600 ETKDGv3 43
PNF H141 -6.161 -1.191 -0.816 ETKDGv3 44
PNF H142 -5.978 0.499 -0.280 ETKDGv3 45
PNF H151 -7.415 -0.791 1.268 ETKDGv3 46
PNF H152 -6.144 -2.007 1.530 ETKDGv3 47
PNF H161 -4.695 -0.280 2.655 ETKDGv3 48
PNF H162 -6.282 -0.465 3.446 ETKDGv3 49
PNF HO81 -5.221 3.196 1.797 ETKDGv3 50
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