data_PNI
#
_chem_comp.id PNI
_chem_comp.name "TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C44 H36 N8 Ni"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-03-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 735.504
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PNI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EM0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PNI NI NI NI 0 0 N N N N N N 2.586 0.696 74.587 0.029 0.196 -0.022 NI PNI 1
PNI NA "N A" N 0 1 Y N N N N N 1.260 2.050 74.941 1.884 -0.706 -0.288 NA PNI 2
PNI C1A C1A C 0 1 Y N N N N N 1.313 3.047 75.867 2.759 -0.827 0.763 C1A PNI 3
PNI C2A C2A C 0 1 Y N N N N N 0.138 3.931 75.799 3.738 -1.559 0.157 C2A PNI 4
PNI C3A C3A C 0 1 Y N N N N N -0.606 3.411 74.750 3.527 -1.548 -1.250 C3A PNI 5
PNI C4A C4A C 0 1 Y N N N N N 0.019 2.280 74.226 2.468 -0.737 -1.543 C4A PNI 6
PNI C5A C5A C 0 1 N N N N N N -0.431 1.439 73.327 1.976 0.084 -2.658 C5A PNI 7
PNI C6A C6A C 0 1 N N N N N N -1.757 1.784 72.663 2.811 0.045 -3.783 C6A PNI 8
PNI C7A C7A C 0 1 N N N N N N -2.908 2.090 73.435 2.313 0.411 -5.117 C7A PNI 9
PNI C8A C8A C 0 1 N N N N N N -4.036 2.529 72.840 3.213 0.619 -6.098 C8A PNI 10
PNI NPA NPA N 0 1 N N N N N N -4.096 2.726 71.506 4.556 0.495 -5.850 NPA PNI 11
PNI C9A C9A C 0 1 N N N N N N -3.015 2.417 70.728 5.033 -0.126 -4.724 C9A PNI 12
PNI C0A C0A C 0 1 N N N N N N -1.826 1.969 71.248 4.219 -0.364 -3.676 C0A PNI 13
PNI CMA CMA C 0 1 N N N N N N -5.352 3.103 70.900 5.510 1.039 -6.820 CMA PNI 14
PNI NB "N B" N 0 1 Y N N N N N 1.290 -0.289 73.556 -0.229 0.987 -1.917 NB PNI 15
PNI C1B C1B C 0 1 Y N N N N N 0.128 0.166 73.012 0.791 0.949 -2.841 C1B PNI 16
PNI C2B C2B C 0 1 Y N N N N N -0.531 -0.876 72.309 0.204 1.610 -3.884 C2B PNI 17
PNI C3B C3B C 0 1 Y N N N N N 0.172 -2.010 72.573 -1.201 1.662 -3.662 C3B PNI 18
PNI C4B C4B C 0 1 Y N N N N N 1.338 -1.630 73.278 -1.483 1.021 -2.490 C4B PNI 19
PNI C5B C5B C 0 1 N N N N N N 2.435 -2.455 73.511 -2.569 0.129 -2.013 C5B PNI 20
PNI C6B C6B C 0 1 N N N N N N 2.225 -3.899 73.353 -3.586 -0.066 -2.958 C6B PNI 21
PNI C7B C7B C 0 1 N N N N N N 1.381 -4.624 74.105 -4.924 -0.524 -2.557 C7B PNI 22
PNI C8B C8B C 0 1 N N N N N N 1.179 -6.005 74.058 -5.764 -0.954 -3.518 C8B PNI 23
PNI NPB NPB N 0 1 N N N N N N 2.041 -6.606 73.062 -5.373 -0.967 -4.832 NPB PNI 24
PNI C9B C9B C 0 1 N N N N N N 2.864 -6.059 72.388 -4.267 -0.285 -5.268 C9B PNI 25
PNI C0B C0B C 0 1 N N N N N N 3.053 -4.603 72.424 -3.358 0.183 -4.389 C0B PNI 26
PNI CMB CMB C 0 1 N N N N N N 2.009 -8.087 73.137 -6.162 -1.734 -5.800 CMB PNI 27
PNI NC "N C" N 0 1 Y N N N N N 3.952 -0.700 74.291 -1.875 -0.577 0.279 NC PNI 28
PNI C1C C1C C 0 1 Y N N N N N 3.600 -1.986 73.880 -2.795 -0.589 -0.752 C1C PNI 29
PNI C2C C2C C 0 1 Y N N N N N 4.934 -2.721 73.908 -3.772 -1.324 -0.139 C2C PNI 30
PNI C3C C3C C 0 1 Y N N N N N 5.961 -1.899 74.183 -3.575 -1.285 1.271 C3C PNI 31
PNI C4C C4C C 0 1 Y N N N N N 5.261 -0.549 74.530 -2.436 -0.584 1.540 C4C PNI 32
PNI C5C C5C C 0 1 N N N N N N 5.929 0.386 75.115 -1.942 0.316 2.608 C5C PNI 33
PNI C6C C6C C 0 1 N N N N N N 7.424 0.357 75.147 -2.856 0.487 3.657 C6C PNI 34
PNI C7C C7C C 0 1 N N N N N N 8.221 0.516 74.140 -2.420 0.956 4.981 C7C PNI 35
PNI C8C C8C C 0 1 N N N N N N 9.526 0.515 74.219 -3.279 0.839 6.012 C8C PNI 36
PNI NPC NPC N 0 1 N N N N N N 10.185 0.366 75.446 -4.522 0.292 5.826 NPC PNI 37
PNI C9C C9C C 0 1 N N N N N N 9.561 0.132 76.473 -5.062 0.122 4.577 C9C PNI 38
PNI C0C C0C C 0 1 N N N N N N 7.958 0.042 76.410 -4.288 0.211 3.476 C0C PNI 39
PNI CMC CMC C 0 1 N N N N N N 11.681 0.383 75.477 -5.298 -0.123 6.998 CMC PNI 40
PNI ND "N D" N 0 1 Y N N N N N 3.869 1.666 75.648 0.350 0.997 1.861 ND PNI 41
PNI C1D C1D C 0 1 Y N N N N N 5.289 1.393 75.798 -0.694 1.067 2.794 C1D PNI 42
PNI C2D C2D C 0 1 Y N N N N N 5.821 2.337 76.756 -0.073 1.845 3.730 C2D PNI 43
PNI C3D C3D C 0 1 Y N N N N N 4.814 3.046 77.220 1.337 1.771 3.537 C3D PNI 44
PNI C4D C4D C 0 1 Y N N N N N 3.613 2.688 76.492 1.589 1.011 2.434 C4D PNI 45
PNI C5D C5D C 0 1 N N N N N N 2.423 3.356 76.672 2.615 -0.015 1.993 C5D PNI 46
PNI C6D C6D C 0 1 N N N N N N 2.392 4.534 77.594 3.628 -0.241 2.935 C6D PNI 47
PNI C7D C7D C 0 1 N N N N N N 3.316 5.595 77.400 4.388 -1.500 2.953 C7D PNI 48
PNI C8D C8D C 0 1 N N N N N N 3.252 6.639 78.194 5.145 -1.771 4.033 C8D PNI 49
PNI C9D C9D C 0 1 N N N N N N 1.380 5.815 79.299 4.748 0.396 4.981 C9D PNI 50
PNI C0D C0D C 0 1 N N N N N N 1.380 4.682 78.463 3.977 0.772 3.941 C0D PNI 51
PNI CMD CMD C 0 1 N N N N N N 2.298 7.940 80.062 5.750 -1.352 6.364 CMD PNI 52
PNI NPD NPD N 0 1 N N N N N N 2.283 6.728 79.174 5.197 -0.894 5.087 NPD PNI 53
PNI H2A H2A H 0 1 N N N N N N -0.058 4.666 76.334 4.545 -2.066 0.665 H2A PNI 54
PNI H3A H3A H 0 1 N N N N N N -1.408 3.765 74.441 4.113 -2.096 -1.973 H3A PNI 55
PNI H7A H7A H 0 1 N N N N N N -2.884 1.987 74.359 1.254 0.512 -5.306 H7A PNI 56
PNI H8A H8A H 0 1 N N N N N N -4.788 2.699 73.360 2.874 0.885 -7.088 H8A PNI 57
PNI H9A H9A H 0 1 N N N N N N -3.088 2.516 69.806 6.071 -0.420 -4.673 H9A PNI 58
PNI H0A H0A H 0 1 N N N N N N -1.095 1.794 70.701 4.591 -0.846 -2.784 H0A PNI 59
PNI HMA1 1HMA H 0 0 N N N N N N -6.012 3.234 71.585 6.527 0.857 -6.471 HMA1 PNI 60
PNI HMA2 2HMA H 0 0 N N N N N N -5.642 2.408 70.305 5.365 0.553 -7.784 HMA2 PNI 61
PNI HMA3 3HMA H 0 0 N N N N N N -5.238 3.919 70.407 5.349 2.112 -6.925 HMA3 PNI 62
PNI H2B H2B H 0 1 N N N N N N -1.289 -0.798 71.776 0.722 2.026 -4.736 H2B PNI 63
PNI H3B H3B H 0 1 N N N N N N -0.070 -2.876 72.334 -1.924 2.133 -4.310 H3B PNI 64
PNI H7B H7B H 0 1 N N N N N N 0.873 -4.154 74.726 -5.225 -0.516 -1.520 H7B PNI 65
PNI H8B H8B H 0 1 N N N N N N 0.577 -6.472 74.591 -6.755 -1.292 -3.251 H8B PNI 66
PNI H9B H9B H 0 1 N N N N N N 3.399 -6.570 71.824 -4.124 -0.116 -6.325 H9B PNI 67
PNI H0B H0B H 0 1 N N N N N N 3.669 -4.169 71.880 -2.483 0.718 -4.728 H0B PNI 68
PNI HMB1 1HMB H 0 0 N N N N N N 1.387 -8.360 73.815 -5.716 -1.638 -6.790 HMB1 PNI 69
PNI HMB2 2HMB H 0 0 N N N N N N 2.884 -8.415 73.353 -6.174 -2.784 -5.508 HMB2 PNI 70
PNI HMB3 3HMB H 0 0 N N N N N N 1.734 -8.444 72.289 -7.182 -1.351 -5.822 HMB3 PNI 71
PNI H2C H2C H 0 1 N N N N N N 5.027 -3.634 73.753 -4.568 -1.851 -0.645 H2C PNI 72
PNI H3C H3C H 0 1 N N N N N N 6.872 -2.089 74.169 -4.222 -1.737 2.008 H3C PNI 73
PNI H7C H7C H 0 1 N N N N N N 7.839 0.639 73.301 -1.438 1.382 5.123 H7C PNI 74
PNI H8C H8C H 0 1 N N N N N N 10.028 0.617 73.443 -2.985 1.180 6.994 H8C PNI 75
PNI H9C H9C H 0 1 N N N N N N 10.008 0.007 77.279 -6.118 -0.080 4.473 H9C PNI 76
PNI H0C H0C H 0 1 N N N N N N 7.432 -0.196 77.139 -4.708 0.074 2.490 H0C PNI 77
PNI HMC1 1HMC H 0 0 N N N N N N 11.985 0.204 76.370 -6.254 -0.533 6.673 HMC1 PNI 78
PNI HMC2 2HMC H 0 0 N N N N N N 11.997 1.245 75.198 -4.744 -0.883 7.549 HMC2 PNI 79
PNI HMC3 3HMC H 0 0 N N N N N N 12.021 -0.290 74.882 -5.472 0.738 7.642 HMC3 PNI 80
PNI H2D H2D H 0 1 N N N N N N 6.713 2.426 77.001 -0.571 2.423 4.495 H2D PNI 81
PNI H3D H3D H 0 1 N N N N N N 4.865 3.674 77.904 2.083 2.241 4.161 H3D PNI 82
PNI H7D H7D H 0 1 N N N N N N 3.954 5.552 76.725 4.340 -2.189 2.122 H7D PNI 83
PNI H8D H8D H 0 1 N N N N N N 3.868 7.329 78.095 5.717 -2.686 4.070 H8D PNI 84
PNI H9D H9D H 0 1 N N N N N N 0.720 5.907 79.948 5.019 1.121 5.735 H9D PNI 85
PNI H0D H0D H 0 1 N N N N N N 0.646 4.005 78.516 3.618 1.787 3.855 H0D PNI 86
PNI HMD1 1HMD H 0 0 N N N N N N 2.999 8.533 79.782 5.716 -0.537 7.087 HMD1 PNI 87
PNI HMD2 2HMD H 0 0 N N N N N N 2.451 7.670 80.971 5.161 -2.191 6.735 HMD2 PNI 88
PNI HMD3 3HMD H 0 0 N N N N N N 1.453 8.392 80.001 6.783 -1.668 6.221 HMD3 PNI 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PNI NI NA SING N N 1
PNI NI NB SING N N 2
PNI NI NC SING N N 3
PNI NI ND SING N N 4
PNI NA C1A SING Y N 5
PNI NA C4A SING Y N 6
PNI C1A C2A DOUB Y N 7
PNI C1A C5D SING N N 8
PNI C2A C3A SING Y N 9
PNI C2A H2A SING N N 10
PNI C3A C4A DOUB Y N 11
PNI C3A H3A SING N N 12
PNI C4A C5A SING N N 13
PNI C5A C6A DOUB N N 14
PNI C5A C1B SING N N 15
PNI C6A C7A SING N N 16
PNI C6A C0A SING N N 17
PNI C7A C8A DOUB N N 18
PNI C7A H7A SING N N 19
PNI C8A NPA SING N N 20
PNI C8A H8A SING N N 21
PNI NPA C9A SING N N 22
PNI NPA CMA SING N N 23
PNI C9A C0A DOUB N N 24
PNI C9A H9A SING N N 25
PNI C0A H0A SING N N 26
PNI CMA HMA1 SING N N 27
PNI CMA HMA2 SING N N 28
PNI CMA HMA3 SING N N 29
PNI NB C1B SING Y N 30
PNI NB C4B SING Y N 31
PNI C1B C2B DOUB Y N 32
PNI C2B C3B SING Y N 33
PNI C2B H2B SING N N 34
PNI C3B C4B DOUB Y N 35
PNI C3B H3B SING N N 36
PNI C4B C5B SING N N 37
PNI C5B C6B DOUB N N 38
PNI C5B C1C SING N N 39
PNI C6B C7B SING N N 40
PNI C6B C0B SING N N 41
PNI C7B C8B DOUB N N 42
PNI C7B H7B SING N N 43
PNI C8B NPB SING N N 44
PNI C8B H8B SING N N 45
PNI NPB C9B SING N N 46
PNI NPB CMB SING N N 47
PNI C9B C0B DOUB N N 48
PNI C9B H9B SING N N 49
PNI C0B H0B SING N N 50
PNI CMB HMB1 SING N N 51
PNI CMB HMB2 SING N N 52
PNI CMB HMB3 SING N N 53
PNI NC C1C SING Y N 54
PNI NC C4C SING Y N 55
PNI C1C C2C DOUB Y N 56
PNI C2C C3C SING Y N 57
PNI C2C H2C SING N N 58
PNI C3C C4C DOUB Y N 59
PNI C3C H3C SING N N 60
PNI C4C C5C SING N N 61
PNI C5C C6C DOUB N N 62
PNI C5C C1D SING N N 63
PNI C6C C7C SING N N 64
PNI C6C C0C SING N N 65
PNI C7C C8C DOUB N N 66
PNI C7C H7C SING N N 67
PNI C8C NPC SING N N 68
PNI C8C H8C SING N N 69
PNI NPC C9C SING N N 70
PNI NPC CMC SING N N 71
PNI C9C C0C DOUB N N 72
PNI C9C H9C SING N N 73
PNI C0C H0C SING N N 74
PNI CMC HMC1 SING N N 75
PNI CMC HMC2 SING N N 76
PNI CMC HMC3 SING N N 77
PNI ND C1D SING Y N 78
PNI ND C4D SING Y N 79
PNI C1D C2D DOUB Y N 80
PNI C2D C3D SING Y N 81
PNI C2D H2D SING N N 82
PNI C3D C4D DOUB Y N 83
PNI C3D H3D SING N N 84
PNI C4D C5D SING N N 85
PNI C5D C6D DOUB N N 86
PNI C6D C7D SING N N 87
PNI C6D C0D SING N N 88
PNI C7D C8D DOUB N N 89
PNI C7D H7D SING N N 90
PNI C8D NPD SING N N 91
PNI C8D H8D SING N N 92
PNI C9D C0D DOUB N N 93
PNI C9D NPD SING N N 94
PNI C9D H9D SING N N 95
PNI C0D H0D SING N N 96
PNI CMD NPD SING N N 97
PNI CMD HMD1 SING N N 98
PNI CMD HMD2 SING N N 99
PNI CMD HMD3 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PNI SMILES ACDLabs 10.04 c76/C(c%11n4c(/C(c1n5c(cc1)/C(=C2/C=CN(C=C2)C)c3ccc/9n3[Ni]45n6c(cc7)C\9=C8/C=CN(C=C8)C)=C%10/C=CN(C=C%10)C)cc%11)=C%12\C=CN(C=C%12)C
PNI SMILES_CANONICAL CACTVS 3.341 CN1C=CC(C=C1)=C2c3ccc4n3[Ni]56n7c2ccc7C(=C8C=CN(C)C=C8)c9ccc(n59)C(=C%10C=CN(C)C=C%10)c%11ccc(n6%11)C4=C%12C=CN(C)C=C%12
PNI SMILES CACTVS 3.341 CN1C=CC(C=C1)=C2c3ccc4n3[Ni]56n7c2ccc7C(=C8C=CN(C)C=C8)c9ccc(n59)C(=C%10C=CN(C)C=C%10)c%11ccc(n6%11)C4=C%12C=CN(C)C=C%12
PNI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN1C=CC(=C2c3ccc4n3[Ni]56n7c2ccc7C(=C8C=CN(C=C8)C)c9n5c(cc9)C(=C2C=CN(C=C2)C)c2n6c(cc2)C4=C2C=CN(C=C2)C)C=C1
PNI SMILES "OpenEye OEToolkits" 1.5.0 CN1C=CC(=C2c3ccc4n3[Ni]56n7c2ccc7C(=C8C=CN(C=C8)C)c9n5c(cc9)C(=C2C=CN(C=C2)C)c2n6c(cc2)C4=C2C=CN(C=C2)C)C=C1
PNI InChI InChI 1.03 InChI=1S/C44H36N8.Ni/c1-49-21-13-29(14-22-49)41-33-5-7-35(45-33)42(30-15-23-50(2)24-16-30)37-9-11-39(47-37)44(32-19-27-52(4)28-20-32)40-12-10-38(48-40)43(36-8-6-34(41)46-36)31-17-25-51(3)26-18-31;/h5-28H,1-4H3;/q-4;+4
PNI InChIKey InChI 1.03 KZZFAYDWICISAM-UHFFFAOYSA-N
#
_pdbx_chem_comp_identifier.comp_id PNI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"[5,10,15,20-tetrakis(1-methylpyridin-4(1H)-ylidene)-5,10,15,20,22,24-hexahydroporphyrinato(4-)-kappa~4~N~21~,N~22~,N~23~,N~24~]nickel"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PNI 'Create component' 2000-03-17 RCSB
PNI 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PNI NI Ni 0.000 0.000 1
PNI NA N -1.518 1.556 2
PNI C1A C -2.999 1.291 3
PNI C2A C -3.682 2.657 4
PNI C3A C -2.619 3.720 5
PNI C4A C -1.291 3.037 6
PNI C5A C 0.000 3.796 7
PNI C6A C -0.007 5.327 8
PNI C7A C 1.289 6.052 9
PNI C8A C 1.282 7.552 10
PNI NPA N -0.020 8.296 11
PNI C9A C -1.316 7.540 12
PNI C0A C -1.309 6.040 13
PNI CMA C -0.027 9.796 14
PNI NB N 1.556 1.556 15
PNI C1B C 1.329 3.037 16
PNI C2B C 2.658 3.720 17
PNI C3B C 3.758 2.657 18
PNI C4B C 3.037 1.291 19
PNI C5B C 3.796 0.000 20
PNI C6B C 5.294 -0.012 21
PNI C7B C 6.036 -1.318 22
PNI C8B C 7.536 -1.330 23
PNI NPB N 8.296 -0.037 24
PNI C9B C 7.557 1.268 25
PNI C0B C 6.057 1.280 26
PNI CMB C 9.796 -0.050 27
PNI NC N 1.556 -1.556 28
PNI C1C C 3.037 -1.291 29
PNI C2C C 3.758 -2.657 30
PNI C3C C 2.658 -3.720 31
PNI C4C C 1.329 -3.037 32
PNI C5C C 0.000 -3.796 33
PNI C6C C -0.012 -5.294 34
PNI C7C C -1.317 -6.036 35
PNI C8C C -1.330 -7.536 36
PNI NPC N -0.037 -8.296 37
PNI C9C C 1.268 -7.557 38
PNI C0C C 1.281 -6.057 39
PNI CMC C -0.049 -9.796 40
PNI ND N -1.518 -1.556 41
PNI C1D C -1.291 -3.037 42
PNI C2D C -2.619 -3.720 43
PNI C3D C -3.682 -2.657 44
PNI C4D C -2.999 -1.291 45
PNI C5D C -3.758 0.000 46
PNI C6D C -5.256 -0.012 47
PNI C7D C -6.019 1.281 48
PNI C8D C -7.519 1.268 49
PNI C9D C -7.498 -1.330 50
PNI C0D C -5.998 -1.317 51
PNI CMD C -9.758 -0.049 52
PNI NPD N -8.258 -0.037 53
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PNI NI NA SINGLE NONE 1
PNI NI NB SINGLE NONE 2
PNI NI NC SINGLE NONE 3
PNI NI ND SINGLE NONE 4
PNI NA C1A SINGLE NONE 5
PNI NA C4A SINGLE NONE 6
PNI C1A C2A DOUBLE NONE 7
PNI C1A C5D SINGLE NONE 8
PNI C2A C3A SINGLE NONE 9
PNI C3A C4A DOUBLE NONE 10
PNI C4A C5A SINGLE NONE 11
PNI C5A C6A DOUBLE NONE 12
PNI C5A C1B SINGLE NONE 13
PNI C6A C7A SINGLE NONE 14
PNI C6A C0A SINGLE NONE 15
PNI C7A C8A DOUBLE NONE 16
PNI C8A NPA SINGLE NONE 17
PNI NPA C9A SINGLE NONE 18
PNI NPA CMA SINGLE NONE 19
PNI C9A C0A DOUBLE NONE 20
PNI NB C1B SINGLE NONE 21
PNI NB C4B SINGLE NONE 22
PNI C1B C2B DOUBLE NONE 23
PNI C2B C3B SINGLE NONE 24
PNI C3B C4B DOUBLE NONE 25
PNI C4B C5B SINGLE NONE 26
PNI C5B C6B DOUBLE NONE 27
PNI C5B C1C SINGLE NONE 28
PNI C6B C7B SINGLE NONE 29
PNI C6B C0B SINGLE NONE 30
PNI C7B C8B DOUBLE NONE 31
PNI C8B NPB SINGLE NONE 32
PNI NPB C9B SINGLE NONE 33
PNI NPB CMB SINGLE NONE 34
PNI C9B C0B DOUBLE NONE 35
PNI NC C1C SINGLE NONE 36
PNI NC C4C SINGLE NONE 37
PNI C1C C2C DOUBLE NONE 38
PNI C2C C3C SINGLE NONE 39
PNI C3C C4C DOUBLE NONE 40
PNI C4C C5C SINGLE NONE 41
PNI C5C C6C DOUBLE NONE 42
PNI C5C C1D SINGLE NONE 43
PNI C6C C7C SINGLE NONE 44
PNI C6C C0C SINGLE NONE 45
PNI C7C C8C DOUBLE NONE 46
PNI C8C NPC SINGLE NONE 47
PNI NPC C9C SINGLE NONE 48
PNI NPC CMC SINGLE NONE 49
PNI C9C C0C DOUBLE NONE 50
PNI ND C1D SINGLE NONE 51
PNI ND C4D SINGLE NONE 52
PNI C1D C2D DOUBLE NONE 53
PNI C2D C3D SINGLE NONE 54
PNI C3D C4D DOUBLE NONE 55
PNI C4D C5D SINGLE NONE 56
PNI C5D C6D DOUBLE NONE 57
PNI C6D C7D SINGLE NONE 58
PNI C6D C0D SINGLE NONE 59
PNI C7D C8D DOUBLE NONE 60
PNI C8D NPD SINGLE NONE 61
PNI C9D C0D DOUBLE NONE 62
PNI C9D NPD SINGLE NONE 63
PNI CMD NPD SINGLE NONE 64
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PNI MurckoScaffold S1 scaffold 'C1=CC(=C2c3ccc4n3[Ni@SP2]35n6c2ccc6C(=C2C=CNC=C2)c2ccc(n23)C(=C2C=CNC=C2)c2ccc(n25)C4=C2C=CNC=C2)C=CN1' 'InChI=1S/C40H28N8.Ni/c1-2-30-38(26-11-19-42-20-12-26)32-5-6-34(47-32)40(28-15-23-44-24-16-28)36-8-7-35(48-36)39(27-13-21-43-22-14-27)33-4-3-31(46-33)37(29(1)45-30)25-9-17-41-18-10-25;/h1-24,41-44H;/q-4;+4' BLFLIZRWKIGQSX-UHFFFAOYSA-N
PNI bilirubin F1 fragment 'c1c[nH]c(Cc2ccc(Cc3ccc(Cc4ccc[nH]4)[nH]3)[nH]2)c1' InChI=1S/C19H20N4/c1-3-14(20-9-1)11-16-5-7-18(22-16)13-19-8-6-17(23-19)12-15-4-2-10-21-15/h1-10,20-23H,11-13H2 AXMKEYXDFDKKIO-UHFFFAOYSA-N
PNI porphin-like F2 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
PNI pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PNI NI S1 1
PNI NA S1 1
PNI C1A S1 1
PNI C2A S1 1
PNI C3A S1 1
PNI C4A S1 1
PNI C5A S1 1
PNI C6A S1 1
PNI C7A S1 1
PNI C8A S1 1
PNI NPA S1 1
PNI C9A S1 1
PNI C0A S1 1
PNI NB S1 1
PNI C1B S1 1
PNI C2B S1 1
PNI C3B S1 1
PNI C4B S1 1
PNI C5B S1 1
PNI C6B S1 1
PNI C7B S1 1
PNI C8B S1 1
PNI NPB S1 1
PNI C9B S1 1
PNI C0B S1 1
PNI NC S1 1
PNI C1C S1 1
PNI C2C S1 1
PNI C3C S1 1
PNI C4C S1 1
PNI C5C S1 1
PNI C6C S1 1
PNI C7C S1 1
PNI C8C S1 1
PNI NPC S1 1
PNI C9C S1 1
PNI C0C S1 1
PNI ND S1 1
PNI C1D S1 1
PNI C2D S1 1
PNI C3D S1 1
PNI C4D S1 1
PNI C5D S1 1
PNI C6D S1 1
PNI C7D S1 1
PNI C8D S1 1
PNI C9D S1 1
PNI C0D S1 1
PNI NPD S1 1
PNI C2A F1 1
PNI C1A F1 1
PNI NA F1 1
PNI C4A F1 1
PNI C3A F1 1
PNI C5A F1 1
PNI C1B F1 1
PNI C2B F1 1
PNI C3B F1 1
PNI C4B F1 1
PNI NB F1 1
PNI C5B F1 1
PNI C1C F1 1
PNI C2C F1 1
PNI C3C F1 1
PNI C4C F1 1
PNI NC F1 1
PNI C5D F1 1
PNI C4D F1 1
PNI C3D F1 1
PNI C2D F1 1
PNI C1D F1 1
PNI ND F1 1
PNI C3A F1 2
PNI C4A F1 2
PNI NA F1 2
PNI C1A F1 2
PNI C2A F1 2
PNI C5D F1 2
PNI C4D F1 2
PNI C3D F1 2
PNI C2D F1 2
PNI C1D F1 2
PNI ND F1 2
PNI C5C F1 2
PNI C4C F1 2
PNI C3C F1 2
PNI C2C F1 2
PNI C1C F1 2
PNI NC F1 2
PNI C5A F1 2
PNI C1B F1 2
PNI C2B F1 2
PNI C3B F1 2
PNI C4B F1 2
PNI NB F1 2
PNI C2B F1 3
PNI C1B F1 3
PNI NB F1 3
PNI C4B F1 3
PNI C3B F1 3
PNI C5B F1 3
PNI C1C F1 3
PNI C2C F1 3
PNI C3C F1 3
PNI C4C F1 3
PNI NC F1 3
PNI C5C F1 3
PNI C1D F1 3
PNI C2D F1 3
PNI C3D F1 3
PNI C4D F1 3
PNI ND F1 3
PNI C5A F1 3
PNI C4A F1 3
PNI C3A F1 3
PNI C2A F1 3
PNI C1A F1 3
PNI NA F1 3
PNI C2C F1 4
PNI C1C F1 4
PNI NC F1 4
PNI C4C F1 4
PNI C3C F1 4
PNI C5C F1 4
PNI C1D F1 4
PNI C2D F1 4
PNI C3D F1 4
PNI C4D F1 4
PNI ND F1 4
PNI C5D F1 4
PNI C1A F1 4
PNI C2A F1 4
PNI C3A F1 4
PNI C4A F1 4
PNI NA F1 4
PNI C5B F1 4
PNI C4B F1 4
PNI C3B F1 4
PNI C2B F1 4
PNI C1B F1 4
PNI NB F1 4
PNI C2A F2 1
PNI C3A F2 1
PNI C4A F2 1
PNI C5A F2 1
PNI C1B F2 1
PNI NB F2 1
PNI C4B F2 1
PNI C3B F2 1
PNI C2B F2 1
PNI C5B F2 1
PNI C1C F2 1
PNI NC F2 1
PNI C4C F2 1
PNI C5C F2 1
PNI C1D F2 1
PNI ND F2 1
PNI C4D F2 1
PNI C5D F2 1
PNI C1A F2 1
PNI NA F2 1
PNI C3D F2 1
PNI C2D F2 1
PNI C3C F2 1
PNI C2C F2 1
PNI C1A F3 1
PNI C2A F3 1
PNI C3A F3 1
PNI C4A F3 1
PNI NA F3 1
PNI C1B F3 2
PNI C2B F3 2
PNI C3B F3 2
PNI C4B F3 2
PNI NB F3 2
PNI C1C F3 3
PNI C2C F3 3
PNI C3C F3 3
PNI C4C F3 3
PNI NC F3 3
PNI C1D F3 4
PNI C2D F3 4
PNI C3D F3 4
PNI C4D F3 4
PNI ND F3 4
#
_pdbe_chem_comp_rdkit_properties.comp_id PNI
_pdbe_chem_comp_rdkit_properties.exactmw 734.242
_pdbe_chem_comp_rdkit_properties.amw 735.521
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 53
_pdbe_chem_comp_rdkit_properties.NumAtoms 89
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.091
_pdbe_chem_comp_rdkit_properties.NumRings 12
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 8
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 12
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 8
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 361.420
_pdbe_chem_comp_rdkit_properties.tpsa 32.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 7.114
_pdbe_chem_comp_rdkit_properties.CrippenMR 205.452
_pdbe_chem_comp_rdkit_properties.chi0v 26.882
_pdbe_chem_comp_rdkit_properties.chi1v 16.805
_pdbe_chem_comp_rdkit_properties.chi2v 12.789
_pdbe_chem_comp_rdkit_properties.chi3v 12.789
_pdbe_chem_comp_rdkit_properties.chi4v 11.562
_pdbe_chem_comp_rdkit_properties.chi0n 61.894
_pdbe_chem_comp_rdkit_properties.chi1n 33.038
_pdbe_chem_comp_rdkit_properties.chi2n 8.652
_pdbe_chem_comp_rdkit_properties.chi3n 8.652
_pdbe_chem_comp_rdkit_properties.chi4n 6.681
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -6.306
_pdbe_chem_comp_rdkit_properties.kappa1 11.106
_pdbe_chem_comp_rdkit_properties.kappa2 9.967
_pdbe_chem_comp_rdkit_properties.kappa3 3.508
_pdbe_chem_comp_rdkit_properties.Phi 2.089
#
_pdbe_chem_comp_external_mappings.comp_id PNI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id PNI
#