data_PPF
#
_chem_comp.id PPF
_chem_comp.name "PHOSPHONOFORMIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C H3 O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-03-09
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 126.005
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PPF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EI6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PPF C1 C1 C 0 1 N N N N N N 13.360 -0.759 24.176 -0.132 0.012 1.196 C1 PPF 1
PPF O1 O1 O 0 1 N N N N N N 11.601 -2.047 22.657 -1.395 0.055 -1.299 O1 PPF 2
PPF O2 O2 O 0 1 N N N N N N 10.723 -0.501 24.376 0.973 1.177 -1.095 O2 PPF 3
PPF O3 O3 O 0 1 N N N N N N 11.823 0.384 22.395 0.692 -1.328 -0.992 O3 PPF 4
PPF O4 O4 O 0 1 N N N N N N 13.604 0.160 24.884 0.950 -0.060 1.985 O4 PPF 5
PPF O5 O5 O 0 1 N N N N N N 14.218 -1.710 23.958 -1.231 0.119 1.687 O5 PPF 6
PPF P1 P1 P 0 1 N N N N N N 11.794 -0.745 23.360 0.053 -0.050 -0.607 P1 PPF 7
PPF HO1 HO1 H 0 1 N N N N N N 11.560 -1.898 21.720 -1.252 0.018 -2.255 HO1 PPF 8
PPF HO2 HO2 H 0 1 N N N N N N 11.112 -0.449 25.241 0.522 1.989 -0.824 HO2 PPF 9
PPF HO4 HO4 H 0 1 N N N N N N 14.483 0.068 25.232 0.851 -0.026 2.947 HO4 PPF 10
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PPF C1 O4 SING N N 1
PPF C1 O5 DOUB N N 2
PPF C1 P1 SING N N 3
PPF O1 P1 SING N N 4
PPF O1 HO1 SING N N 5
PPF O2 P1 SING N N 6
PPF O2 HO2 SING N N 7
PPF O3 P1 DOUB N N 8
PPF O4 HO4 SING N N 9
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PPF SMILES ACDLabs 10.04 O=C(O)P(=O)(O)O
PPF SMILES_CANONICAL CACTVS 3.341 OC(=O)[P](O)(O)=O
PPF SMILES CACTVS 3.341 OC(=O)[P](O)(O)=O
PPF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(=O)(O)P(=O)(O)O
PPF SMILES "OpenEye OEToolkits" 1.5.0 C(=O)(O)P(=O)(O)O
PPF InChI InChI 1.03 InChI=1S/CH3O5P/c2-1(3)7(4,5)6/h(H,2,3)(H2,4,5,6)
PPF InChIKey InChI 1.03 ZJAOAACCNHFJAH-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PPF "SYSTEMATIC NAME" ACDLabs 10.04 "dihydroxyphosphanecarboxylic acid oxide"
PPF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "phosphonomethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PPF 'Create component' 2000-03-09 RCSB
PPF 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PPF
_pdbe_chem_comp_drugbank_details.drugbank_id DB00529
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Foscarnet
_pdbe_chem_comp_drugbank_details.description
'An antiviral agent used in the treatment of cytomegalovirus retinitis. Foscarnet also shows activity against human herpes viruses and HIV.'
_pdbe_chem_comp_drugbank_details.cas_number 4428-95-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Foscarnet exerts its antiviral activity by a selective inhibition at the pyrophosphate binding site on virus-specific DNA polymerases at concentrations that do not affect cellular DNA polymerases.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PPF 'Carboxyphosphonic acid' DrugBank ?
PPF Foscarmet DrugBank ?
PPF Phosphonoformate DrugBank ?
PPF 'Phosphonoformic acid' DrugBank ?
PPF 'Phosphonomethanoic acid' DrugBank ?
PPF Triapten DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id PPF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00529
_pdbe_chem_comp_drugbank_classification.parent 'Organic phosphonic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organic phosphonic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as organic phosphonic acids. These are organic compounds containing phosphonic acid.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
PPF DB00529 'DNA polymerase catalytic subunit' HHV-1 P04293 yes 1
PPF DB00529 'DNA polymerase catalytic subunit' HHV-5 P08546 yes 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PPF C1 C 6.404 0.275 1
PPF O1 O 3.805 -1.226 2
PPF O2 O 4.354 0.824 3
PPF O3 O 5.854 -1.774 4
PPF O4 O 7.702 -0.475 5
PPF O5 O 6.404 1.774 6
PPF P1 P 5.104 -0.475 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PPF C1 O4 SINGLE NONE 1
PPF C1 O5 DOUBLE NONE 2
PPF C1 P1 SINGLE NONE 3
PPF O1 P1 SINGLE NONE 4
PPF O2 P1 SINGLE NONE 5
PPF O3 P1 DOUBLE NONE 6
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id PPF
_pdbe_chem_comp_rdkit_properties.exactmw 125.972
_pdbe_chem_comp_rdkit_properties.amw 126.004
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 10
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 43.221
_pdbe_chem_comp_rdkit_properties.tpsa 94.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.158
_pdbe_chem_comp_rdkit_properties.CrippenMR 20.069
_pdbe_chem_comp_rdkit_properties.chi0v 3.883
_pdbe_chem_comp_rdkit_properties.chi1v 2.722
_pdbe_chem_comp_rdkit_properties.chi2v 0.671
_pdbe_chem_comp_rdkit_properties.chi3v 0.671
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 5.988
_pdbe_chem_comp_rdkit_properties.chi1n 2.404
_pdbe_chem_comp_rdkit_properties.chi2n 0.224
_pdbe_chem_comp_rdkit_properties.chi3n 0.224
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.380
_pdbe_chem_comp_rdkit_properties.kappa1 2.814
_pdbe_chem_comp_rdkit_properties.kappa2 1.614
_pdbe_chem_comp_rdkit_properties.kappa3 2.332
_pdbe_chem_comp_rdkit_properties.Phi 0.649
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PPF UniChem ChEMBL CHEMBL666
PPF UniChem DrugBank DB00529
PPF UniChem PDBe PPF
PPF UniChem 'Guide to Pharmacology' 5497
PPF UniChem 'KEGG LIGAND' C06456
PPF UniChem ChEBI 127780
PPF UniChem ZINC ZINC000008101109
PPF UniChem fdasrs 364P9RVW4X
PPF UniChem SureChEMBL SCHEMBL23633
PPF UniChem PharmGKB PA449706
PPF UniChem HMDB HMDB0014670
PPF UniChem NMRShiftDB 70073169
PPF UniChem BindingDb 50011181
PPF UniChem 'EPA CompTox Dashboard' DTXSID0048478
PPF UniChem DrugCentral 1241
PPF UniChem BRENDA 12659
PPF UniChem BRENDA 44136
PPF UniChem DailyMed FOSCARNET
PPF UniChem ClinicalTrials FOSCARNET
PPF UniChem ClinicalTrials 'FOSCARNET SODIUM'
PPF UniChem ClinicalTrials FOSCAVIR
PPF UniChem rxnorm FOSCARNET
PPF UniChem rxnorm 'FOSCARNET SODIUM'
PPF UniChem rxnorm FOSCAVIR
PPF UniChem 'Probes And Drugs' PD009975
PPF UniChem Nikkaji J11.016G
PPF UniChem 'PubChem TPHARMA' 15194456
PPF UniChem PubChem 3415
PPF UniChem ACTor 4428-95-9
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PPF C1 1.014 0.060 -0.061 ETKDGv3 1
PPF O1 -1.445 1.492 -0.189 ETKDGv3 2
PPF O2 -1.469 -1.162 0.593 ETKDGv3 3
PPF O3 -0.926 -0.448 -1.863 ETKDGv3 4
PPF O4 1.890 -0.839 -0.660 ETKDGv3 5
PPF O5 1.443 0.906 0.766 ETKDGv3 6
PPF P1 -0.734 -0.026 -0.424 ETKDGv3 7
PPF HO1 -1.363 1.664 0.782 ETKDGv3 8
PPF HO2 -1.292 -0.833 1.510 ETKDGv3 9
PPF HO4 2.881 -0.814 -0.454 ETKDGv3 10
#