data_PQZ
#
_chem_comp.id PQZ
_chem_comp.name "1-(cyclopropylmethyl)-2,5-dimethyl-pyrrole-3-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H15 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-04-27
_chem_comp.pdbx_modified_date 2020-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 193.242
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PQZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YUW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PQZ C1 C1 C 0 1 Y N N N N N 28.009 -4.400 -4.870 0.100 1.659 0.116 C1 PQZ 1
PQZ C2 C2 C 0 1 Y N N N N N 26.779 -3.769 -4.841 -1.214 1.563 -0.152 C2 PQZ 2
PQZ C3 C3 C 0 1 Y N N N N N 25.834 -4.622 -5.495 -1.566 0.148 0.009 C3 PQZ 3
PQZ C4 C4 C 0 1 Y N N N N N 26.520 -5.754 -5.923 -0.401 -0.495 0.368 C4 PQZ 4
PQZ C5 C5 C 0 1 N N N N N N 28.884 -6.596 -5.746 1.978 0.131 0.771 C5 PQZ 5
PQZ C6 C6 C 0 1 N N N N N N 29.609 -6.372 -7.037 2.761 -0.208 -0.499 C6 PQZ 6
PQZ C7 C7 C 0 1 N N N N N N 30.484 -7.455 -7.509 4.268 -0.430 -0.362 C7 PQZ 7
PQZ C8 C8 C 0 1 N N N N N N 29.212 -7.184 -8.220 3.339 -1.619 -0.618 C8 PQZ 8
PQZ C9 C9 C 0 1 N N N N N N 26.049 -6.961 -6.664 -0.253 -1.969 0.643 C9 PQZ 9
PQZ C10 C10 C 0 1 N N N N N N 24.385 -4.330 -5.643 -2.892 -0.461 -0.177 C10 PQZ 10
PQZ N N1 N 0 1 Y N N N N N 27.837 -5.605 -5.526 0.585 0.421 0.423 N PQZ 11
PQZ C C11 C 0 1 N N N N N N 29.330 -3.975 -4.323 0.910 2.930 0.078 C PQZ 12
PQZ O O1 O 0 1 N N N N N N 23.602 -5.135 -6.131 -3.041 -1.656 -0.009 O PQZ 13
PQZ O1 O2 O 0 1 N N N N N N 23.993 -3.174 -5.174 -3.942 0.305 -0.532 O1 PQZ 14
PQZ H1 H1 H 0 1 N N N N N N 26.569 -2.804 -4.403 -1.878 2.368 -0.430 H1 PQZ 15
PQZ H2 H2 H 0 1 N N N N N N 28.427 -7.596 -5.765 2.012 -0.716 1.455 H2 PQZ 16
PQZ H3 H3 H 0 1 N N N N N N 29.607 -6.538 -4.919 2.422 1.003 1.250 H3 PQZ 17
PQZ H4 H4 H 0 1 N N N N N N 29.941 -5.343 -7.238 2.404 0.268 -1.413 H4 PQZ 18
PQZ H5 H5 H 0 1 N N N N N N 30.593 -8.372 -6.911 4.903 -0.101 -1.185 H5 PQZ 19
PQZ H6 H6 H 0 1 N N N N N N 31.443 -7.215 -7.990 4.702 -0.335 0.634 H6 PQZ 20
PQZ H7 H7 H 0 1 N N N N N N 29.226 -6.738 -9.225 3.162 -2.307 0.209 H7 PQZ 21
PQZ H8 H8 H 0 1 N N N N N N 28.376 -7.895 -8.146 3.363 -2.072 -1.609 H8 PQZ 22
PQZ H9 H9 H 0 1 N N N N N N 25.717 -7.726 -5.947 -0.425 -2.160 1.702 H9 PQZ 23
PQZ H10 H10 H 0 1 N N N N N N 25.210 -6.684 -7.319 -0.980 -2.524 0.050 H10 PQZ 24
PQZ H11 H11 H 0 1 N N N N N N 26.873 -7.362 -7.273 0.754 -2.289 0.375 H11 PQZ 25
PQZ H12 H12 H 0 1 N N N N N N 29.879 -3.407 -5.088 0.891 3.402 1.061 H12 PQZ 26
PQZ H13 H13 H 0 1 N N N N N N 29.173 -3.341 -3.438 1.939 2.697 -0.193 H13 PQZ 27
PQZ H14 H14 H 0 1 N N N N N N 29.912 -4.864 -4.039 0.484 3.610 -0.660 H14 PQZ 28
PQZ H15 H15 H 0 1 N N N N N N 23.053 -3.091 -5.280 -4.794 -0.140 -0.642 H15 PQZ 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PQZ C8 C7 SING N N 1
PQZ C8 C6 SING N N 2
PQZ C7 C6 SING N N 3
PQZ C6 C5 SING N N 4
PQZ C9 C4 SING N N 5
PQZ O C10 DOUB N N 6
PQZ C4 N SING Y N 7
PQZ C4 C3 DOUB Y N 8
PQZ C5 N SING N N 9
PQZ C10 C3 SING N N 10
PQZ C10 O1 SING N N 11
PQZ N C1 SING Y N 12
PQZ C3 C2 SING Y N 13
PQZ C1 C2 DOUB Y N 14
PQZ C1 C SING N N 15
PQZ C2 H1 SING N N 16
PQZ C5 H2 SING N N 17
PQZ C5 H3 SING N N 18
PQZ C6 H4 SING N N 19
PQZ C7 H5 SING N N 20
PQZ C7 H6 SING N N 21
PQZ C8 H7 SING N N 22
PQZ C8 H8 SING N N 23
PQZ C9 H9 SING N N 24
PQZ C9 H10 SING N N 25
PQZ C9 H11 SING N N 26
PQZ C H12 SING N N 27
PQZ C H13 SING N N 28
PQZ C H14 SING N N 29
PQZ O1 H15 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PQZ InChI InChI 1.03 InChI=1S/C11H15NO2/c1-7-5-10(11(13)14)8(2)12(7)6-9-3-4-9/h5,9H,3-4,6H2,1-2H3,(H,13,14)
PQZ InChIKey InChI 1.03 IRPSDSAYDMWHCN-UHFFFAOYSA-N
PQZ SMILES_CANONICAL CACTVS 3.385 Cc1cc(C(O)=O)c(C)n1CC2CC2
PQZ SMILES CACTVS 3.385 Cc1cc(C(O)=O)c(C)n1CC2CC2
PQZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1cc(c(n1CC2CC2)C)C(=O)O
PQZ SMILES "OpenEye OEToolkits" 2.0.7 Cc1cc(c(n1CC2CC2)C)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id PQZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "1-(cyclopropylmethyl)-2,5-dimethyl-pyrrole-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PQZ 'Create component' 2020-04-27 PDBE
PQZ 'Initial release' 2020-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PQZ C1 C 4.585 -0.166 1
PQZ C2 C 5.049 1.261 2
PQZ C3 C 6.549 1.261 3
PQZ C4 C 7.013 -0.166 4
PQZ C5 C 5.799 -2.548 5
PQZ C6 C 4.500 -3.298 6
PQZ C7 C 3.750 -4.597 7
PQZ C8 C 3.000 -3.298 8
PQZ C9 C 8.439 -0.630 9
PQZ C10 C 7.431 2.474 10
PQZ N N 5.799 -1.048 11
PQZ C C 3.159 -0.630 12
PQZ O O 6.821 3.844 13
PQZ O1 O 8.922 2.317 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PQZ C8 C7 SINGLE NONE 1
PQZ C8 C6 SINGLE NONE 2
PQZ C7 C6 SINGLE NONE 3
PQZ C6 C5 SINGLE NONE 4
PQZ C9 C4 SINGLE NONE 5
PQZ O C10 DOUBLE NONE 6
PQZ C4 N SINGLE NONE 7
PQZ C4 C3 DOUBLE NONE 8
PQZ C5 N SINGLE NONE 9
PQZ C10 C3 SINGLE NONE 10
PQZ C10 O1 SINGLE NONE 11
PQZ N C1 SINGLE NONE 12
PQZ C3 C2 SINGLE NONE 13
PQZ C1 C2 DOUBLE NONE 14
PQZ C1 C SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PQZ MurckoScaffold S1 scaffold c1ccn(CC2CC2)c1 InChI=1S/C8H11N/c1-2-6-9(5-1)7-8-3-4-8/h1-2,5-6,8H,3-4,7H2 IXRUUKBZHIGXFI-UHFFFAOYSA-N
PQZ cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
PQZ pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PQZ C1 S1 1
PQZ C2 S1 1
PQZ C3 S1 1
PQZ C4 S1 1
PQZ C5 S1 1
PQZ C6 S1 1
PQZ C7 S1 1
PQZ C8 S1 1
PQZ N S1 1
PQZ C6 F1 1
PQZ C8 F1 1
PQZ C7 F1 1
PQZ C1 F2 1
PQZ C2 F2 1
PQZ C3 F2 1
PQZ C4 F2 1
PQZ N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PQZ
_pdbe_chem_comp_rdkit_properties.exactmw 193.110
_pdbe_chem_comp_rdkit_properties.amw 193.246
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 104.516
_pdbe_chem_comp_rdkit_properties.tpsa 42.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.049
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.791
_pdbe_chem_comp_rdkit_properties.chi0v 6.764
_pdbe_chem_comp_rdkit_properties.chi1v 3.579
_pdbe_chem_comp_rdkit_properties.chi2v 1.605
_pdbe_chem_comp_rdkit_properties.chi3v 1.605
_pdbe_chem_comp_rdkit_properties.chi4v 0.916
_pdbe_chem_comp_rdkit_properties.chi0n 21.764
_pdbe_chem_comp_rdkit_properties.chi1n 10.987
_pdbe_chem_comp_rdkit_properties.chi2n 1.605
_pdbe_chem_comp_rdkit_properties.chi3n 1.605
_pdbe_chem_comp_rdkit_properties.chi4n 0.916
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.250
_pdbe_chem_comp_rdkit_properties.kappa1 2.130
_pdbe_chem_comp_rdkit_properties.kappa2 3.154
_pdbe_chem_comp_rdkit_properties.kappa3 1.541
_pdbe_chem_comp_rdkit_properties.Phi 0.480
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PQZ UniChem ChEMBL CHEMBL4647574
PQZ UniChem PDBe PQZ
PQZ UniChem ZINC ZINC000022212771
PQZ UniChem eMolecules 32442984
PQZ UniChem BindingDb 50543233
PQZ UniChem PubChem 16788534
PQZ UniChem Mcule MCULE-2932595659
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PQZ C1 0.779 1.454 0.265 ETKDGv3 1
PQZ C2 1.927 1.267 -0.372 ETKDGv3 2
PQZ C3 2.176 -0.174 -0.413 ETKDGv3 3
PQZ C4 1.151 -0.776 0.199 ETKDGv3 4
PQZ C5 -1.155 -0.029 1.115 ETKDGv3 5
PQZ C6 -2.032 -0.424 -0.079 ETKDGv3 6
PQZ C7 -3.526 -0.397 0.200 ETKDGv3 7
PQZ C8 -2.897 0.679 -0.670 ETKDGv3 8
PQZ C9 0.974 -2.261 0.352 ETKDGv3 9
PQZ C10 3.346 -0.802 -1.057 ETKDGv3 10
PQZ N 0.221 0.204 0.673 ETKDGv3 11
PQZ C 0.125 2.787 0.457 ETKDGv3 12
PQZ O 4.217 -0.075 -1.606 ETKDGv3 13
PQZ O1 3.504 -2.184 -1.068 ETKDGv3 14
PQZ H1 2.544 2.043 -0.807 ETKDGv3 15
PQZ H2 -1.545 0.873 1.635 ETKDGv3 16
PQZ H3 -1.171 -0.847 1.864 ETKDGv3 17
PQZ H4 -1.708 -1.227 -0.776 ETKDGv3 18
PQZ H5 -3.831 -0.041 1.207 ETKDGv3 19
PQZ H6 -4.116 -1.147 -0.369 ETKDGv3 20
PQZ H7 -3.114 0.564 -1.753 ETKDGv3 21
PQZ H8 -2.847 1.673 -0.177 ETKDGv3 22
PQZ H9 1.829 -2.685 0.918 ETKDGv3 23
PQZ H10 0.045 -2.506 0.902 ETKDGv3 24
PQZ H11 0.915 -2.736 -0.650 ETKDGv3 25
PQZ H12 -0.265 2.872 1.493 ETKDGv3 26
PQZ H13 -0.710 2.898 -0.264 ETKDGv3 27
PQZ H14 0.853 3.610 0.292 ETKDGv3 28
PQZ H15 4.308 -2.612 -1.510 ETKDGv3 29
#