data_PTS
#
_chem_comp.id PTS
_chem_comp.name "(4S-TRANS)-4-(AMINO)-5,6-DIHYDRO-6-METHYL-4H-THIENO (2,3-B)THIOPYRAN-2-SULFONAMIDE-7,7-DIOXIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H12 N2 O4 S3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 296.387
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PTS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CIM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PTS S1 S1 S 0 1 Y N N N N N -6.170 3.652 15.475 1.390 -0.149 -0.609 S1 PTS 1
PTS C2 C2 C 0 1 Y N N N N N -5.326 2.202 15.686 0.012 -0.037 -1.741 C2 PTS 2
PTS C3 C3 C 0 1 Y N N N N N -3.999 2.288 15.211 -1.038 0.031 -0.893 C3 PTS 3
PTS C4 C4 C 0 1 Y N N N N N -3.730 3.568 14.627 -0.833 0.007 0.491 C4 PTS 4
PTS C5 C5 C 0 1 N N S N N N -2.418 3.951 13.990 -1.985 0.093 1.481 C5 PTS 5
PTS C6 C6 C 0 1 N N N N N N -2.316 5.487 13.736 -1.621 -0.508 2.828 C6 PTS 6
PTS C7 C7 C 0 1 N N S N N N -3.554 6.063 13.053 -0.459 0.260 3.473 C7 PTS 7
PTS S8 S8 S 0 1 N N N N N N -4.895 6.015 14.214 1.052 -0.170 2.546 S8 PTS 8
PTS C9 C9 C 0 1 Y N N N N N -4.882 4.390 14.657 0.459 -0.097 0.895 C9 PTS 9
PTS S10 S10 S 0 1 N N N N N N -5.889 0.921 16.712 0.020 -0.023 -3.503 S10 PTS 10
PTS O11 O11 O 0 1 N N N N N N -7.313 0.792 16.657 1.242 -0.636 -3.888 O11 PTS 11
PTS O12 O12 O 0 1 N N N N N N -5.305 1.054 18.013 -1.275 -0.451 -3.898 O12 PTS 12
PTS N13 N13 N 0 1 N N N N N N -5.285 -0.582 16.093 0.138 1.556 -3.984 N13 PTS 13
PTS N14 N14 N 0 1 N N N N N N -2.235 3.271 12.677 -3.141 -0.627 0.931 N14 PTS 14
PTS C15 C15 C 0 1 N N N N N N -3.412 7.537 12.681 -0.715 1.765 3.381 C15 PTS 15
PTS O16 O16 O 0 1 N N N N N N -6.097 6.350 13.488 2.017 0.870 2.591 O16 PTS 16
PTS O17 O17 O 0 1 N N N N N N -4.514 6.831 15.330 1.400 -1.539 2.705 O17 PTS 17
PTS H3 H3 H 0 1 N N N N N N -3.269 1.464 15.286 -2.041 0.107 -1.286 H3 PTS 18
PTS H5 H5 H 0 1 N N N N N N -1.628 3.633 14.710 -2.255 1.140 1.621 H5 PTS 19
PTS H61 H61 H 0 1 N N N N N N -2.093 6.032 14.682 -1.329 -1.549 2.689 H61 PTS 20
PTS H62 H62 H 0 1 N N N N N N -1.393 5.734 13.161 -2.488 -0.465 3.487 H62 PTS 21
PTS H7 H7 H 0 1 N N N N N N -3.713 5.459 12.129 -0.352 -0.035 4.516 H7 PTS 22
PTS HN31 1HN3 H 0 0 N N N N N N -5.616 -1.335 16.696 0.158 1.775 -4.929 HN31 PTS 23
PTS HN32 2HN3 H 0 0 N N N N N N -4.270 -0.582 15.985 0.187 2.263 -3.321 HN32 PTS 24
PTS HN41 1HN4 H 0 0 N N N N N N -1.347 3.530 12.246 -3.353 -0.201 0.041 HN41 PTS 25
PTS HN42 2HN4 H 0 0 N N N N N N -3.020 3.447 12.051 -2.831 -1.567 0.737 HN42 PTS 26
PTS H151 1H15 H 0 0 N N N N N N -4.316 7.957 12.182 0.122 2.304 3.823 H151 PTS 27
PTS H152 2H15 H 0 0 N N N N N N -3.134 8.144 13.573 -0.821 2.053 2.335 H152 PTS 28
PTS H153 3H15 H 0 0 N N N N N N -2.503 7.701 12.055 -1.630 2.012 3.921 H153 PTS 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PTS S1 C2 SING Y N 1
PTS S1 C9 SING Y N 2
PTS C2 C3 DOUB Y N 3
PTS C2 S10 SING N N 4
PTS C3 C4 SING Y N 5
PTS C3 H3 SING N N 6
PTS C4 C5 SING N N 7
PTS C4 C9 DOUB Y N 8
PTS C5 C6 SING N N 9
PTS C5 N14 SING N N 10
PTS C5 H5 SING N N 11
PTS C6 C7 SING N N 12
PTS C6 H61 SING N N 13
PTS C6 H62 SING N N 14
PTS C7 S8 SING N N 15
PTS C7 C15 SING N N 16
PTS C7 H7 SING N N 17
PTS S8 C9 SING N N 18
PTS S8 O16 DOUB N N 19
PTS S8 O17 DOUB N N 20
PTS S10 O11 DOUB N N 21
PTS S10 O12 DOUB N N 22
PTS S10 N13 SING N N 23
PTS N13 HN31 SING N N 24
PTS N13 HN32 SING N N 25
PTS N14 HN41 SING N N 26
PTS N14 HN42 SING N N 27
PTS C15 H151 SING N N 28
PTS C15 H152 SING N N 29
PTS C15 H153 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PTS SMILES ACDLabs 10.04 O=S(=O)(c1sc2c(c1)C(N)CC(C)S2(=O)=O)N
PTS SMILES_CANONICAL CACTVS 3.341 C[C@H]1C[C@H](N)c2cc(sc2[S]1(=O)=O)[S](N)(=O)=O
PTS SMILES CACTVS 3.341 C[CH]1C[CH](N)c2cc(sc2[S]1(=O)=O)[S](N)(=O)=O
PTS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]1C[C@@H](c2cc(sc2S1(=O)=O)S(=O)(=O)N)N
PTS SMILES "OpenEye OEToolkits" 1.5.0 CC1CC(c2cc(sc2S1(=O)=O)S(=O)(=O)N)N
PTS InChI InChI 1.03 InChI=1S/C8H12N2O4S3/c1-4-2-6(9)5-3-7(17(10,13)14)15-8(5)16(4,11)12/h3-4,6H,2,9H2,1H3,(H2,10,13,14)/t4-,6-/m0/s1
PTS InChIKey InChI 1.03 HVURBRAECUMAHY-NJGYIYPDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PTS "SYSTEMATIC NAME" ACDLabs 10.04 "(4S,6S)-4-amino-6-methyl-5,6-dihydro-4H-thieno[2,3-b]thiopyran-2-sulfonamide 7,7-dioxide"
PTS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S,6S)-4-amino-6-methyl-7,7-dioxo-5,6-dihydro-4H-thieno[5,4-b]thiopyran-2-sulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PTS 'Create component' 1999-07-08 RCSB
PTS 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PTS S1 S 8.316 -1.540 1
PTS C2 C 9.192 -0.333 2
PTS C3 C 8.316 0.874 3
PTS C4 C 6.897 0.417 4
PTS C5 C 5.598 1.167 5
PTS C6 C 4.299 0.417 6
PTS C7 C 4.299 -1.083 7
PTS S8 S 5.598 -1.833 8
PTS C9 C 6.897 -1.083 9
PTS S10 S 10.692 -0.333 10
PTS O11 O 10.692 1.167 11
PTS O12 O 10.692 -1.833 12
PTS N13 N 12.192 -0.333 13
PTS N14 N 5.598 2.667 14
PTS C15 C 3.000 -1.833 15
PTS O16 O 4.848 -3.132 16
PTS O17 O 6.348 -3.132 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PTS S1 C2 SINGLE NONE 1
PTS S1 C9 SINGLE NONE 2
PTS C2 C3 DOUBLE NONE 3
PTS C2 S10 SINGLE NONE 4
PTS C3 C4 SINGLE NONE 5
PTS C4 C5 SINGLE NONE 6
PTS C4 C9 DOUBLE NONE 7
PTS C5 C6 SINGLE NONE 8
PTS C5 N14 SINGLE BEGINDASH 9
PTS C6 C7 SINGLE NONE 10
PTS C7 S8 SINGLE NONE 11
PTS C7 C15 SINGLE BEGINWEDGE 12
PTS S8 C9 SINGLE NONE 13
PTS S8 O16 DOUBLE NONE 14
PTS S8 O17 DOUBLE NONE 15
PTS S10 O11 DOUBLE NONE 16
PTS S10 O12 DOUBLE NONE 17
PTS S10 N13 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PTS MurckoScaffold S1 scaffold O=S1(=O)CCCc2ccsc21 InChI=1S/C7H8O2S2/c8-11(9)5-1-2-6-3-4-10-7(6)11/h3-4H,1-2,5H2 SQXPYTBNILWCBJ-UHFFFAOYSA-N
PTS thiophen F1 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PTS S1 S1 1
PTS C2 S1 1
PTS C3 S1 1
PTS C4 S1 1
PTS C5 S1 1
PTS C6 S1 1
PTS C7 S1 1
PTS S8 S1 1
PTS C9 S1 1
PTS O16 S1 1
PTS O17 S1 1
PTS C2 F1 1
PTS C3 F1 1
PTS C4 F1 1
PTS C9 F1 1
PTS S1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PTS
_pdbe_chem_comp_rdkit_properties.exactmw 295.996
_pdbe_chem_comp_rdkit_properties.amw 296.395
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.684
_pdbe_chem_comp_rdkit_properties.tpsa 120.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.310
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.759
_pdbe_chem_comp_rdkit_properties.chi0v 10.202
_pdbe_chem_comp_rdkit_properties.chi1v 7.583
_pdbe_chem_comp_rdkit_properties.chi2v 6.202
_pdbe_chem_comp_rdkit_properties.chi3v 6.202
_pdbe_chem_comp_rdkit_properties.chi4v 4.509
_pdbe_chem_comp_rdkit_properties.chi0n 19.752
_pdbe_chem_comp_rdkit_properties.chi1n 9.632
_pdbe_chem_comp_rdkit_properties.chi2n 1.832
_pdbe_chem_comp_rdkit_properties.chi3n 1.832
_pdbe_chem_comp_rdkit_properties.chi4n 1.106
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.480
_pdbe_chem_comp_rdkit_properties.kappa1 4.566
_pdbe_chem_comp_rdkit_properties.kappa2 3.755
_pdbe_chem_comp_rdkit_properties.kappa3 2.015
_pdbe_chem_comp_rdkit_properties.Phi 1.009
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PTS UniChem ChEMBL CHEMBL475
PTS UniChem PDBe PTS
PTS UniChem ZINC ZINC000006932783
PTS UniChem fdasrs F1043V1890
PTS UniChem 'PubChem TPHARMA' 16889251
PTS UniChem PubChem 3074858
PTS UniChem Nikkaji J579.202I
PTS UniChem BindingDb 50041033
PTS UniChem 'EPA CompTox Dashboard' DTXSID80165545
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PTS S1 1.253 1.136 1.858 ETKDGv3 1
PTS C2 2.280 0.694 0.477 ETKDGv3 2
PTS C3 1.571 0.070 -0.460 ETKDGv3 3
PTS C4 0.139 -0.116 -0.110 ETKDGv3 4
PTS C5 -0.883 -0.716 -1.069 ETKDGv3 5
PTS C6 -2.173 -1.205 -0.367 ETKDGv3 6
PTS C7 -2.887 -0.128 0.472 ETKDGv3 7
PTS S8 -1.783 0.446 1.753 ETKDGv3 8
PTS C9 -0.174 0.423 1.074 ETKDGv3 9
PTS S10 3.988 1.066 0.348 ETKDGv3 10
PTS O11 4.520 1.452 1.700 ETKDGv3 11
PTS O12 4.182 2.208 -0.608 ETKDGv3 12
PTS N13 4.842 -0.325 -0.222 ETKDGv3 13
PTS N14 -0.311 -1.841 -1.815 ETKDGv3 14
PTS C15 -3.395 1.038 -0.385 ETKDGv3 15
PTS O16 -2.145 1.840 2.186 ETKDGv3 16
PTS O17 -1.846 -0.485 2.930 ETKDGv3 17
PTS H3 2.010 -0.260 -1.392 ETKDGv3 18
PTS H5 -1.162 0.072 -1.801 ETKDGv3 19
PTS H61 -2.879 -1.589 -1.136 ETKDGv3 20
PTS H62 -1.922 -2.063 0.296 ETKDGv3 21
PTS H7 -3.767 -0.598 0.961 ETKDGv3 22
PTS HN31 4.706 -1.079 0.488 ETKDGv3 23
PTS HN32 5.859 -0.084 -0.216 ETKDGv3 24
PTS HN41 0.198 -2.477 -1.158 ETKDGv3 25
PTS HN42 0.375 -1.480 -2.517 ETKDGv3 26
PTS H151 -2.552 1.648 -0.774 ETKDGv3 27
PTS H152 -4.049 1.696 0.226 ETKDGv3 28
PTS H153 -3.994 0.657 -1.239 ETKDGv3 29
#