data_PW1
#
_chem_comp.id PW1
_chem_comp.name "[2,4-bis(fluoranyl)-3-phenoxy-phenyl]methylazanium"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H12 F2 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2012-08-16
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 236.237
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PW1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4B76
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PW1 C6 C6 C 0 1 Y N N N N N 46.471 7.023 -39.256 2.820 -0.989 0.639 C6 PW1 1
PW1 C5 C5 C 0 1 Y N N N N N 46.008 8.282 -39.577 1.888 -2.007 0.728 C5 PW1 2
PW1 C4 C4 C 0 1 Y N N N N N 44.663 8.494 -39.699 0.652 -1.870 0.123 C4 PW1 3
PW1 F F F 0 1 N N N N N N 44.210 9.730 -40.014 -0.259 -2.864 0.211 F PW1 4
PW1 C3 C3 C 0 1 Y N N N N N 43.748 7.484 -39.509 0.347 -0.708 -0.576 C3 PW1 5
PW1 C8 C8 C 0 1 Y N N N N N 44.225 6.221 -39.186 1.286 0.311 -0.664 C8 PW1 6
PW1 C7 C7 C 0 1 Y N N N N N 45.582 5.971 -39.056 2.520 0.168 -0.056 C7 PW1 7
PW1 C2 C2 C 0 1 N N N N N N 46.140 4.607 -38.705 3.539 1.274 -0.150 C2 PW1 8
PW1 N3 N3 N 1 1 N N N N N N 45.707 4.100 -37.385 3.218 2.320 0.830 N3 PW1 9
PW1 C13 C13 C 0 1 Y N N N N N 39.556 7.249 -41.812 -4.153 0.707 -0.277 C13 PW1 10
PW1 C12 C12 C 0 1 Y N N N N N 40.355 7.567 -40.734 -3.131 0.144 -1.016 C12 PW1 11
PW1 C11 C11 C 0 1 Y N N N N N 41.722 7.381 -40.807 -1.874 -0.017 -0.449 C11 PW1 12
PW1 C10 C10 C 0 1 Y N N N N N 42.288 6.874 -41.967 -1.649 0.389 0.859 C10 PW1 13
PW1 O12 O12 O 0 1 N N N N N N 42.394 7.747 -39.643 -0.867 -0.571 -1.173 O12 PW1 14
PW1 C9 C9 C 0 1 Y N N N N N 41.483 6.558 -43.040 -2.675 0.951 1.593 C9 PW1 15
PW1 F2 F2 F 0 1 N N N N N N 43.337 5.227 -38.999 0.994 1.442 -1.343 F2 PW1 16
PW1 C14 C14 C 0 1 Y N N N N N 40.122 6.745 -42.962 -3.926 1.110 1.026 C14 PW1 17
PW1 H21 H21 H 0 1 N N N N N N 45.813 3.892 -39.474 4.531 0.873 0.058 H21 PW1 18
PW1 H22 H22 H 0 1 N N N N N N 47.238 4.672 -38.707 3.522 1.699 -1.154 H22 PW1 19
PW1 H6 H6 H 0 1 N N N N N N 47.533 6.852 -39.159 3.783 -1.097 1.116 H6 PW1 20
PW1 H5 H5 H 0 1 N N N N N N 46.703 9.094 -39.731 2.125 -2.910 1.271 H5 PW1 21
PW1 H12 H12 H 0 1 N N N N N N 39.912 7.962 -39.832 -3.309 -0.171 -2.033 H12 PW1 22
PW1 H13 H13 H 0 1 N N N N N N 38.487 7.395 -41.755 -5.130 0.837 -0.720 H13 PW1 23
PW1 H14 H14 H 0 1 N N N N N N 39.495 6.496 -43.806 -4.726 1.554 1.600 H14 PW1 24
PW1 H9 H9 H 0 1 N N N N N N 41.921 6.163 -43.944 -2.500 1.266 2.611 H9 PW1 25
PW1 H10 H10 H 0 1 N N N N N N 43.356 6.727 -42.029 -0.672 0.264 1.303 H10 PW1 26
PW1 H31 H31 H 0 1 N N N N N N 46.113 3.200 -37.223 2.300 2.691 0.637 H31 PW1 27
PW1 H32 H32 H 0 1 N N N N N N 46.005 4.733 -36.671 3.234 1.927 1.759 H32 PW1 28
PW1 H33 H33 H 0 1 N N N N N N 44.710 4.024 -37.368 3.901 3.061 0.766 H33 PW1 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PW1 C6 C5 SING Y N 1
PW1 C6 C7 DOUB Y N 2
PW1 C5 C4 DOUB Y N 3
PW1 C4 F SING N N 4
PW1 C4 C3 SING Y N 5
PW1 C3 C8 DOUB Y N 6
PW1 C3 O12 SING N N 7
PW1 C8 C7 SING Y N 8
PW1 C8 F2 SING N N 9
PW1 C7 C2 SING N N 10
PW1 C2 N3 SING N N 11
PW1 C9 C10 DOUB Y N 12
PW1 C9 C14 SING Y N 13
PW1 C10 C11 SING Y N 14
PW1 C11 C12 DOUB Y N 15
PW1 C11 O12 SING N N 16
PW1 C12 C13 SING Y N 17
PW1 C13 C14 DOUB Y N 18
PW1 C2 H21 SING N N 19
PW1 C2 H22 SING N N 20
PW1 N3 H31 SING N N 21
PW1 N3 H32 SING N N 22
PW1 N3 H33 SING N N 23
PW1 C6 H6 SING N N 24
PW1 C5 H5 SING N N 25
PW1 C12 H12 SING N N 26
PW1 C13 H13 SING N N 27
PW1 C9 H9 SING N N 28
PW1 C10 H10 SING N N 29
PW1 C14 H14 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PW1 SMILES ACDLabs 12.01 Fc2c(ccc(F)c2Oc1ccccc1)C[NH3+]
PW1 InChI InChI 1.03 InChI=1S/C13H11F2NO/c14-11-7-6-9(8-16)12(15)13(11)17-10-4-2-1-3-5-10/h1-7H,8,16H2/p+1
PW1 InChIKey InChI 1.03 OPHNCLQYKIKHON-UHFFFAOYSA-O
PW1 SMILES_CANONICAL CACTVS 3.385 "[NH3+]Cc1ccc(F)c(Oc2ccccc2)c1F"
PW1 SMILES CACTVS 3.385 "[NH3+]Cc1ccc(F)c(Oc2ccccc2)c1F"
PW1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)Oc2c(ccc(c2F)C[NH3+])F
PW1 SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)Oc2c(ccc(c2F)C[NH3+])F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PW1 "SYSTEMATIC NAME" ACDLabs 12.01 (2,4-difluoro-3-phenoxyphenyl)methanaminium
PW1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[2,4-bis(fluoranyl)-3-phenoxy-phenyl]methylazanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PW1 'Create component' 2012-08-16 EBI
PW1 'Initial release' 2012-09-28 RCSB
PW1 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PW1 C6 C 6.528 -2.535 1
PW1 C5 C 7.827 -1.785 2
PW1 C4 C 7.827 -0.285 3
PW1 F F 9.126 0.465 4
PW1 C3 C 6.528 0.465 5
PW1 C8 C 5.229 -0.285 6
PW1 C7 C 5.229 -1.785 7
PW1 C2 C 3.930 -2.535 8
PW1 N3 N 3.930 -4.035 9
PW1 C13 C 9.126 4.965 10
PW1 C12 C 7.827 4.215 11
PW1 C11 C 7.827 2.715 12
PW1 C10 C 9.126 1.965 13
PW1 O12 O 6.528 1.965 14
PW1 C9 C 10.425 2.715 15
PW1 F2 F 3.930 0.465 16
PW1 C14 C 10.425 4.215 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PW1 C6 C5 DOUBLE NONE 1
PW1 C6 C7 SINGLE NONE 2
PW1 C5 C4 SINGLE NONE 3
PW1 C4 F SINGLE NONE 4
PW1 C4 C3 DOUBLE NONE 5
PW1 C3 C8 SINGLE NONE 6
PW1 C3 O12 SINGLE NONE 7
PW1 C8 C7 DOUBLE NONE 8
PW1 C8 F2 SINGLE NONE 9
PW1 C7 C2 SINGLE NONE 10
PW1 C2 N3 SINGLE NONE 11
PW1 C9 C10 SINGLE NONE 12
PW1 C9 C14 DOUBLE NONE 13
PW1 C10 C11 DOUBLE NONE 14
PW1 C11 C12 SINGLE NONE 15
PW1 C11 O12 SINGLE NONE 16
PW1 C12 C13 DOUBLE NONE 17
PW1 C13 C14 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PW1 MurckoScaffold S1 scaffold c1ccc(Oc2ccccc2)cc1 InChI=1S/C12H10O/c1-3-7-11(8-4-1)13-12-9-5-2-6-10-12/h1-10H USIUVYZYUHIAEV-UHFFFAOYSA-N
PW1 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PW1 C6 S1 1
PW1 C5 S1 1
PW1 C4 S1 1
PW1 C3 S1 1
PW1 C8 S1 1
PW1 C7 S1 1
PW1 C13 S1 1
PW1 C12 S1 1
PW1 C11 S1 1
PW1 C10 S1 1
PW1 O12 S1 1
PW1 C9 S1 1
PW1 C14 S1 1
PW1 C6 F1 1
PW1 C5 F1 1
PW1 C4 F1 1
PW1 C3 F1 1
PW1 C8 F1 1
PW1 C7 F1 1
PW1 C13 F1 2
PW1 C12 F1 2
PW1 C11 F1 2
PW1 C10 F1 2
PW1 C9 F1 2
PW1 C14 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id PW1
_pdbe_chem_comp_rdkit_properties.exactmw 236.088
_pdbe_chem_comp_rdkit_properties.amw 236.241
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.077
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.672
_pdbe_chem_comp_rdkit_properties.tpsa 36.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.519
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.980
_pdbe_chem_comp_rdkit_properties.chi0v 8.111
_pdbe_chem_comp_rdkit_properties.chi1v 4.260
_pdbe_chem_comp_rdkit_properties.chi2v 1.708
_pdbe_chem_comp_rdkit_properties.chi3v 1.708
_pdbe_chem_comp_rdkit_properties.chi4v 0.997
_pdbe_chem_comp_rdkit_properties.chi0n 20.111
_pdbe_chem_comp_rdkit_properties.chi1n 10.101
_pdbe_chem_comp_rdkit_properties.chi2n 1.708
_pdbe_chem_comp_rdkit_properties.chi3n 1.708
_pdbe_chem_comp_rdkit_properties.chi4n 0.997
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.940
_pdbe_chem_comp_rdkit_properties.kappa1 3.781
_pdbe_chem_comp_rdkit_properties.kappa2 4.928
_pdbe_chem_comp_rdkit_properties.kappa3 2.422
_pdbe_chem_comp_rdkit_properties.Phi 1.096
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PW1 UniChem PDBe PW1
PW1 UniChem PubChem 60196225
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PW1 C6 2.673 0.686 -1.050 ETKDGv3 1
PW1 C5 1.601 1.174 -1.683 ETKDGv3 2
PW1 C4 0.297 1.242 -0.993 ETKDGv3 3
PW1 F -0.758 1.803 -1.635 ETKDGv3 4
PW1 C3 0.177 0.787 0.269 ETKDGv3 5
PW1 C8 1.370 0.261 0.974 ETKDGv3 6
PW1 C7 2.566 0.220 0.353 ETKDGv3 7
PW1 C2 3.781 -0.353 1.038 ETKDGv3 8
PW1 N3 3.843 -1.803 0.854 ETKDGv3 9
PW1 C13 -3.589 -0.868 -1.166 ETKDGv3 10
PW1 C12 -2.387 -0.510 -0.697 ETKDGv3 11
PW1 C11 -2.280 0.449 0.436 ETKDGv3 12
PW1 C10 -3.401 0.926 0.998 ETKDGv3 13
PW1 O12 -1.040 0.839 0.962 ETKDGv3 14
PW1 C9 -4.726 0.530 0.477 ETKDGv3 15
PW1 F2 1.236 -0.190 2.247 ETKDGv3 16
PW1 C14 -4.816 -0.319 -0.553 ETKDGv3 17
PW1 H21 3.765 -0.113 2.124 ETKDGv3 18
PW1 H22 4.701 0.112 0.619 ETKDGv3 19
PW1 H6 3.623 0.637 -1.568 ETKDGv3 20
PW1 H5 1.687 1.523 -2.704 ETKDGv3 21
PW1 H12 -1.496 -0.937 -1.140 ETKDGv3 22
PW1 H13 -3.665 -1.568 -1.988 ETKDGv3 23
PW1 H14 -5.785 -0.610 -0.936 ETKDGv3 24
PW1 H9 -5.624 0.930 0.931 ETKDGv3 25
PW1 H10 -3.342 1.612 1.834 ETKDGv3 26
PW1 H31 4.699 -2.172 1.327 ETKDGv3 27
PW1 H32 3.000 -2.255 1.277 ETKDGv3 28
PW1 H33 3.893 -2.033 -0.165 ETKDGv3 29
#