data_Q82
#
_chem_comp.id Q82
_chem_comp.name
;{[4-R(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS(4-HYDROXYMETHYL)METHYL]-4,7-BIS(PHENYLMETHYL)
-2H-1,3-DIAZEPIN-2-YLIDENE]CYANAMIDE}
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H38 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Q8261
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 590.711
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Q82
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HVH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q82 N11 N11 N 0 1 N N N N N N -7.733 14.499 28.218 -0.694 -2.210 -0.901 N11 Q82 1
Q82 O4 O4 O 0 1 N N N N N N -11.240 18.855 29.011 0.538 2.999 1.048 O4 Q82 2
Q82 O5 O5 O 0 1 N N N N N N -9.379 19.557 27.138 0.568 0.987 3.295 O5 Q82 3
Q82 N7 N7 N 0 1 N N N N N N -8.893 15.970 26.900 -0.167 -1.219 1.208 N7 Q82 4
Q82 N2 N2 N 0 1 N N N N N N -9.502 15.575 29.117 -0.655 0.092 -0.614 N2 Q82 5
Q82 C1 C1 C 0 1 N N N N N N -8.690 15.342 28.070 -0.514 -1.140 -0.146 C1 Q82 6
Q82 C2 C2 C 0 1 N N N N N N -9.432 14.721 30.312 -1.881 0.427 -1.345 C2 Q82 7
Q82 C3 C3 C 0 1 N N R N N N -10.591 16.549 29.045 0.361 1.135 -0.438 C3 Q82 8
Q82 C4 C4 C 0 1 N N S N N N -10.174 17.987 28.712 0.196 1.613 0.985 C4 Q82 9
Q82 C5 C5 C 0 1 N N S N N N -9.794 18.220 27.260 1.085 0.835 1.972 C5 Q82 10
Q82 C6 C6 C 0 1 N N R N N N -8.607 17.390 26.821 1.100 -0.655 1.599 C6 Q82 11
Q82 C7 C7 C 0 1 N N N N N N -9.346 15.293 25.675 -1.053 -1.854 2.187 C7 Q82 12
Q82 C20 C20 C 0 1 Y N N N N N -9.707 15.436 31.619 -1.684 0.145 -2.812 C20 Q82 13
Q82 C21 C21 C 0 1 Y N N N N N -8.825 16.408 32.080 -1.994 -1.100 -3.324 C21 Q82 14
Q82 C22 C22 C 0 1 Y N N N N N -8.971 16.929 33.362 -1.813 -1.358 -4.670 C22 Q82 15
Q82 C23 C23 C 0 1 Y N N N N N -10.062 16.430 34.230 -1.323 -0.371 -5.504 C23 Q82 16
Q82 C24 C24 C 0 1 Y N N N N N -10.921 15.460 33.728 -1.013 0.875 -4.992 C24 Q82 17
Q82 C25 C25 C 0 1 Y N N N N N -10.726 14.966 32.449 -1.198 1.134 -3.646 C25 Q82 18
Q82 C31 C31 C 0 1 N N N N N N -11.647 15.910 28.129 1.761 0.555 -0.645 C31 Q82 19
Q82 C32 C32 C 0 1 Y N N N N N -12.298 14.700 28.769 2.285 0.974 -1.994 C32 Q82 20
Q82 C33 C33 C 0 1 Y N N N N N -12.053 13.385 28.383 3.004 2.148 -2.122 C33 Q82 21
Q82 C34 C34 C 0 1 Y N N N N N -12.689 12.255 28.883 3.485 2.532 -3.360 C34 Q82 22
Q82 C35 C35 C 0 1 Y N N N N N -13.666 12.432 29.847 3.246 1.743 -4.469 C35 Q82 23
Q82 C36 C36 C 0 1 Y N N N N N -13.949 13.729 30.265 2.528 0.569 -4.341 C36 Q82 24
Q82 C37 C37 C 0 1 Y N N N N N -13.286 14.848 29.747 2.051 0.182 -3.103 C37 Q82 25
Q82 C61 C61 C 0 1 N N N N N N -7.365 17.634 27.683 1.621 -1.440 2.804 C61 Q82 26
Q82 C62 C62 C 0 1 Y N N N N N -6.191 18.103 26.858 3.031 -1.007 3.114 C62 Q82 27
Q82 C63 C63 C 0 1 Y N N N N N -6.383 19.085 25.894 3.258 -0.015 4.050 C63 Q82 28
Q82 C64 C64 C 0 1 Y N N N N N -5.450 19.249 24.874 4.551 0.382 4.335 C64 Q82 29
Q82 C65 C65 C 0 1 Y N N N N N -4.321 18.438 24.828 5.617 -0.211 3.684 C65 Q82 30
Q82 C66 C66 C 0 1 Y N N N N N -4.124 17.453 25.789 5.389 -1.203 2.749 C66 Q82 31
Q82 C67 C67 C 0 1 Y N N N N N -5.059 17.289 26.807 4.096 -1.604 2.467 C67 Q82 32
Q82 C70 C70 C 0 1 Y N N N N N -8.773 15.814 24.355 -2.086 -0.859 2.649 C70 Q82 33
Q82 C71 C71 C 0 1 Y N N N N N -7.524 16.130 24.172 -3.289 -0.750 1.976 C71 Q82 34
Q82 C72 C72 C 0 1 Y N N N N N -6.991 16.600 22.974 -4.237 0.162 2.400 C72 Q82 35
Q82 C73 C73 C 0 1 Y N N N N N -7.884 16.753 21.811 -3.983 0.964 3.496 C73 Q82 36
Q82 C74 C74 C 0 1 Y N N N N N -9.213 16.415 22.024 -2.778 0.858 4.166 C74 Q82 37
Q82 C75 C75 C 0 1 Y N N N N N -9.646 15.948 23.268 -1.832 -0.056 3.745 C75 Q82 38
Q82 C12 C12 C 0 1 N N N N N N -7.145 13.959 27.200 -0.536 -3.447 -0.371 C12 Q82 39
Q82 N13 N13 N 0 1 N N N N N N -6.626 13.456 26.281 -0.404 -4.484 0.072 N13 Q82 40
Q82 C76 C76 C 0 1 N N N N N N -7.398 17.257 20.484 -5.017 1.958 3.958 C76 Q82 41
Q82 C26 C26 C 0 1 N N N N N N -10.249 16.968 35.620 -1.125 -0.653 -6.971 C26 Q82 42
Q82 O76 O76 O 0 1 N N N N N N -5.989 17.172 20.332 -5.881 1.338 4.912 O76 Q82 43
Q82 O26 O26 O 0 1 N N N N N N -11.268 16.295 36.351 -2.320 -0.327 -7.684 O26 Q82 44
Q82 HO4 HO4 H 0 1 N N N N N N -10.981 19.745 28.804 0.379 3.285 1.958 HO4 Q82 45
Q82 HO5 HO5 H 0 1 N N N N N N -9.141 19.702 26.229 0.575 1.934 3.491 HO5 Q82 46
Q82 H21A 1H2 H 0 0 N N N N N N -10.111 13.843 30.200 -2.705 -0.176 -0.966 H21A Q82 47
Q82 H22A 2H2 H 0 0 N N N N N N -8.448 14.198 30.356 -2.110 1.483 -1.205 H22A Q82 48
Q82 H3 H3 H 0 1 N N N N N N -11.025 16.739 30.053 0.186 1.955 -1.135 H3 Q82 49
Q82 H4 H4 H 0 1 N N N N N N -9.264 18.182 29.326 -0.846 1.493 1.279 H4 Q82 50
Q82 H5 H5 H 0 1 N N N N N N -10.681 17.952 26.640 2.101 1.228 1.932 H5 Q82 51
Q82 H6 H6 H 0 1 N N N N N N -8.409 17.704 25.769 1.802 -0.793 0.776 H6 Q82 52
Q82 H71A 1H7 H 0 0 N N N N N N -9.156 14.197 25.759 -0.467 -2.192 3.042 H71A Q82 53
Q82 H72A 2H7 H 0 0 N N N N N N -10.460 15.303 25.630 -1.550 -2.708 1.727 H72A Q82 54
Q82 H21 H21 H 0 1 N N N N N N -8.009 16.765 31.428 -2.377 -1.871 -2.673 H21 Q82 55
Q82 H22 H22 H 0 1 N N N N N N -8.252 17.704 33.676 -2.055 -2.332 -5.070 H22 Q82 56
Q82 H24 H24 H 0 1 N N N N N N -11.755 15.083 34.343 -0.630 1.646 -5.643 H24 Q82 57
Q82 H25 H25 H 0 1 N N N N N N -11.401 14.175 32.080 -0.956 2.108 -3.246 H25 Q82 58
Q82 H311 1H31 H 0 0 N N N N N N -12.409 16.657 27.808 2.427 0.926 0.134 H311 Q82 59
Q82 H312 2H31 H 0 0 N N N N N N -11.217 15.657 27.131 1.715 -0.532 -0.595 H312 Q82 60
Q82 H33 H33 H 0 1 N N N N N N -11.283 13.223 27.609 3.190 2.764 -1.255 H33 Q82 61
Q82 H34 H34 H 0 1 N N N N N N -12.425 11.245 28.524 4.046 3.450 -3.460 H34 Q82 62
Q82 H35 H35 H 0 1 N N N N N N -14.202 11.565 30.269 3.621 2.044 -5.437 H35 Q82 63
Q82 H36 H36 H 0 1 N N N N N N -14.726 13.875 31.033 2.342 -0.047 -5.208 H36 Q82 64
Q82 H37 H37 H 0 1 N N N N N N -13.544 15.855 30.112 1.490 -0.734 -3.002 H37 Q82 65
Q82 H611 1H61 H 0 0 N N N N N N -7.582 18.341 28.516 0.984 -1.248 3.667 H611 Q82 66
Q82 H612 2H61 H 0 0 N N N N N N -7.104 16.731 28.282 1.611 -2.506 2.575 H612 Q82 67
Q82 H63 H63 H 0 1 N N N N N N -7.274 19.733 25.938 2.426 0.448 4.559 H63 Q82 68
Q82 H64 H64 H 0 1 N N N N N N -5.605 20.021 24.102 4.729 1.157 5.066 H64 Q82 69
Q82 H65 H65 H 0 1 N N N N N N -3.577 18.576 24.024 6.627 0.099 3.906 H65 Q82 70
Q82 H66 H66 H 0 1 N N N N N N -3.231 16.806 25.744 6.221 -1.667 2.240 H66 Q82 71
Q82 H67 H67 H 0 1 N N N N N N -4.902 16.512 27.574 3.918 -2.379 1.737 H67 Q82 72
Q82 H71 H71 H 0 1 N N N N N N -6.893 15.994 25.066 -3.488 -1.377 1.120 H71 Q82 73
Q82 H72 H72 H 0 1 N N N N N N -5.914 16.839 22.947 -5.177 0.247 1.874 H72 Q82 74
Q82 H74 H74 H 0 1 N N N N N N -9.933 16.518 21.195 -2.579 1.485 5.022 H74 Q82 75
Q82 H75 H75 H 0 1 N N N N N N -10.707 15.677 23.395 -0.892 -0.141 4.270 H75 Q82 76
Q82 H761 1H76 H 0 0 N N N N N N -7.918 16.735 19.647 -5.603 2.297 3.104 H761 Q82 77
Q82 H762 2H76 H 0 0 N N N N N N -7.753 18.297 20.301 -4.520 2.812 4.419 H762 Q82 78
Q82 H261 1H26 H 0 0 N N N N N N -9.285 16.957 36.181 -0.300 -0.049 -7.349 H261 Q82 79
Q82 H262 2H26 H 0 0 N N N N N N -10.437 18.066 35.597 -0.895 -1.709 -7.110 H262 Q82 80
Q82 H76 H76 H 0 1 N N N N N N -5.681 17.491 19.491 -6.526 2.007 5.182 H76 Q82 81
Q82 HO6 HO6 H 0 1 N N N N N N -11.386 16.635 37.230 -2.151 -0.522 -8.616 HO6 Q82 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q82 N11 C1 DOUB N N 1
Q82 N11 C12 SING N N 2
Q82 O4 C4 SING N N 3
Q82 O4 HO4 SING N N 4
Q82 O5 C5 SING N N 5
Q82 O5 HO5 SING N N 6
Q82 N7 C1 SING N N 7
Q82 N7 C6 SING N N 8
Q82 N7 C7 SING N N 9
Q82 N2 C1 SING N N 10
Q82 N2 C2 SING N N 11
Q82 N2 C3 SING N N 12
Q82 C2 C20 SING N N 13
Q82 C2 H21A SING N N 14
Q82 C2 H22A SING N N 15
Q82 C3 C4 SING N N 16
Q82 C3 C31 SING N N 17
Q82 C3 H3 SING N N 18
Q82 C4 C5 SING N N 19
Q82 C4 H4 SING N N 20
Q82 C5 C6 SING N N 21
Q82 C5 H5 SING N N 22
Q82 C6 C61 SING N N 23
Q82 C6 H6 SING N N 24
Q82 C7 C70 SING N N 25
Q82 C7 H71A SING N N 26
Q82 C7 H72A SING N N 27
Q82 C20 C21 DOUB Y N 28
Q82 C20 C25 SING Y N 29
Q82 C21 C22 SING Y N 30
Q82 C21 H21 SING N N 31
Q82 C22 C23 DOUB Y N 32
Q82 C22 H22 SING N N 33
Q82 C23 C24 SING Y N 34
Q82 C23 C26 SING N N 35
Q82 C24 C25 DOUB Y N 36
Q82 C24 H24 SING N N 37
Q82 C25 H25 SING N N 38
Q82 C31 C32 SING N N 39
Q82 C31 H311 SING N N 40
Q82 C31 H312 SING N N 41
Q82 C32 C33 DOUB Y N 42
Q82 C32 C37 SING Y N 43
Q82 C33 C34 SING Y N 44
Q82 C33 H33 SING N N 45
Q82 C34 C35 DOUB Y N 46
Q82 C34 H34 SING N N 47
Q82 C35 C36 SING Y N 48
Q82 C35 H35 SING N N 49
Q82 C36 C37 DOUB Y N 50
Q82 C36 H36 SING N N 51
Q82 C37 H37 SING N N 52
Q82 C61 C62 SING N N 53
Q82 C61 H611 SING N N 54
Q82 C61 H612 SING N N 55
Q82 C62 C63 DOUB Y N 56
Q82 C62 C67 SING Y N 57
Q82 C63 C64 SING Y N 58
Q82 C63 H63 SING N N 59
Q82 C64 C65 DOUB Y N 60
Q82 C64 H64 SING N N 61
Q82 C65 C66 SING Y N 62
Q82 C65 H65 SING N N 63
Q82 C66 C67 DOUB Y N 64
Q82 C66 H66 SING N N 65
Q82 C67 H67 SING N N 66
Q82 C70 C71 DOUB Y N 67
Q82 C70 C75 SING Y N 68
Q82 C71 C72 SING Y N 69
Q82 C71 H71 SING N N 70
Q82 C72 C73 DOUB Y N 71
Q82 C72 H72 SING N N 72
Q82 C73 C74 SING Y N 73
Q82 C73 C76 SING N N 74
Q82 C74 C75 DOUB Y N 75
Q82 C74 H74 SING N N 76
Q82 C75 H75 SING N N 77
Q82 C12 N13 TRIP N N 78
Q82 C76 O76 SING N N 79
Q82 C76 H761 SING N N 80
Q82 C76 H762 SING N N 81
Q82 C26 O26 SING N N 82
Q82 C26 H261 SING N N 83
Q82 C26 H262 SING N N 84
Q82 O76 H76 SING N N 85
Q82 O26 HO6 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q82 SMILES ACDLabs 10.04 "N#C\N=C1\N(C(C(O)C(O)C(N1Cc2ccc(cc2)CO)Cc3ccccc3)Cc4ccccc4)Cc5ccc(cc5)CO"
Q82 SMILES_CANONICAL CACTVS 3.341 "OCc1ccc(CN2[C@H](Cc3ccccc3)[C@H](O)[C@@H](O)[C@@H](Cc4ccccc4)N(Cc5ccc(CO)cc5)C2=NC#N)cc1"
Q82 SMILES CACTVS 3.341 "OCc1ccc(CN2[CH](Cc3ccccc3)[CH](O)[CH](O)[CH](Cc4ccccc4)N(Cc5ccc(CO)cc5)C2=NC#N)cc1"
Q82 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H]2[C@@H]([C@H]([C@H](N(C(=NC#N)N2Cc3ccc(cc3)CO)Cc4ccc(cc4)CO)Cc5ccccc5)O)O"
Q82 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC2C(C(C(N(C(=NC#N)N2Cc3ccc(cc3)CO)Cc4ccc(cc4)CO)Cc5ccccc5)O)O"
Q82 InChI InChI 1.03 InChI=1S/C36H38N4O4/c37-25-38-36-39(21-28-11-15-30(23-41)16-12-28)32(19-26-7-3-1-4-8-26)34(43)35(44)33(20-27-9-5-2-6-10-27)40(36)22-29-13-17-31(24-42)18-14-29/h1-18,32-35,41-44H,19-24H2/t32-,33-,34+,35+/m1/s1
Q82 InChIKey InChI 1.03 VLCZFBGXHAKRLP-WDKGQIBQSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q82 "SYSTEMATIC NAME" ACDLabs 10.04 {(4R,5S,6S,7R)-4,7-dibenzyl-5,6-dihydroxy-1,3-bis[4-(hydroxymethyl)benzyl]-1,3-diazepan-2-ylidene}cyanamide
Q82 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(4R,5S,6S,7R)-5,6-dihydroxy-1,3-bis[[4-(hydroxymethyl)phenyl]methyl]-4,7-bis(phenylmethyl)-1,3-diazepan-2-ylidene]cyanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q82 'Create component' 1999-07-08 RCSB
Q82 'Modify descriptor' 2011-06-04 RCSB
Q82 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id Q82
_pdbx_chem_comp_synonyms.name Q8261
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id Q82
_pdbe_chem_comp_synonyms.name Q8261
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Q82 N11 N 12.237 -1.753 1
Q82 O4 O 8.312 3.168 2
Q82 O5 O 6.566 0.978 3
Q82 N7 N 9.713 -1.469 4
Q82 N2 N 11.398 0.644 5
Q82 C1 C 11.065 -0.818 6
Q82 C2 C 12.861 0.978 7
Q82 C3 C 10.463 1.817 8
Q82 C4 C 8.963 1.817 9
Q82 C5 C 8.028 0.644 10
Q82 C6 C 8.362 -0.818 11
Q82 C7 C 9.713 -2.969 12
Q82 C20 C 13.303 2.411 13
Q82 C21 C 14.765 2.745 14
Q82 C22 C 15.207 4.178 15
Q82 C23 C 14.187 5.278 16
Q82 C24 C 12.725 4.944 17
Q82 C25 C 12.283 3.511 18
Q82 C31 C 11.114 3.168 19
Q82 C32 C 10.269 4.408 20
Q82 C33 C 10.920 5.759 21
Q82 C34 C 10.075 6.999 22
Q82 C35 C 8.579 6.886 23
Q82 C36 C 7.928 5.535 24
Q82 C37 C 8.773 4.296 25
Q82 C61 C 7.189 -1.753 26
Q82 C62 C 5.793 -1.205 27
Q82 C63 C 5.569 0.278 28
Q82 C64 C 4.173 0.826 29
Q82 C65 C 3.000 -0.109 30
Q82 C66 C 3.224 -1.593 31
Q82 C67 C 4.620 -2.140 32
Q82 C70 C 8.414 -3.719 33
Q82 C71 C 7.115 -2.969 34
Q82 C72 C 5.816 -3.719 35
Q82 C73 C 5.816 -5.219 36
Q82 C74 C 7.115 -5.969 37
Q82 C75 C 8.414 -5.219 38
Q82 C12 C 12.014 -3.237 39
Q82 N13 N 11.790 -4.720 40
Q82 C76 C 4.517 -5.969 41
Q82 C26 C 14.629 6.712 42
Q82 O76 O 4.517 -7.469 43
Q82 O26 O 16.092 7.045 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Q82 N11 C1 DOUBLE NONE 1
Q82 N11 C12 SINGLE NONE 2
Q82 C4 O4 SINGLE BEGINWEDGE 3
Q82 C5 O5 SINGLE BEGINDASH 4
Q82 N7 C1 SINGLE NONE 5
Q82 N7 C6 SINGLE NONE 6
Q82 N7 C7 SINGLE NONE 7
Q82 N2 C1 SINGLE NONE 8
Q82 N2 C2 SINGLE NONE 9
Q82 N2 C3 SINGLE NONE 10
Q82 C2 C20 SINGLE NONE 11
Q82 C3 C4 SINGLE NONE 12
Q82 C3 C31 SINGLE BEGINWEDGE 13
Q82 C4 C5 SINGLE NONE 14
Q82 C5 C6 SINGLE NONE 15
Q82 C6 C61 SINGLE BEGINDASH 16
Q82 C7 C70 SINGLE NONE 17
Q82 C20 C21 DOUBLE NONE 18
Q82 C20 C25 SINGLE NONE 19
Q82 C21 C22 SINGLE NONE 20
Q82 C22 C23 DOUBLE NONE 21
Q82 C23 C24 SINGLE NONE 22
Q82 C23 C26 SINGLE NONE 23
Q82 C24 C25 DOUBLE NONE 24
Q82 C31 C32 SINGLE NONE 25
Q82 C32 C33 DOUBLE NONE 26
Q82 C32 C37 SINGLE NONE 27
Q82 C33 C34 SINGLE NONE 28
Q82 C34 C35 DOUBLE NONE 29
Q82 C35 C36 SINGLE NONE 30
Q82 C36 C37 DOUBLE NONE 31
Q82 C61 C62 SINGLE NONE 32
Q82 C62 C63 DOUBLE NONE 33
Q82 C62 C67 SINGLE NONE 34
Q82 C63 C64 SINGLE NONE 35
Q82 C64 C65 DOUBLE NONE 36
Q82 C65 C66 SINGLE NONE 37
Q82 C66 C67 DOUBLE NONE 38
Q82 C70 C71 DOUBLE NONE 39
Q82 C70 C75 SINGLE NONE 40
Q82 C71 C72 SINGLE NONE 41
Q82 C72 C73 DOUBLE NONE 42
Q82 C73 C74 SINGLE NONE 43
Q82 C73 C76 SINGLE NONE 44
Q82 C74 C75 DOUBLE NONE 45
Q82 C12 N13 TRIPLE NONE 46
Q82 C76 O76 SINGLE NONE 47
Q82 C26 O26 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Q82 MurckoScaffold S1 scaffold 'N=C1N(Cc2ccccc2)[C@H](Cc2ccccc2)CC[C@@H](Cc2ccccc2)N1Cc1ccccc1' InChI=1S/C33H35N3/c34-33-35(25-29-17-9-3-10-18-29)31(23-27-13-5-1-6-14-27)21-22-32(24-28-15-7-2-8-16-28)36(33)26-30-19-11-4-12-20-30/h1-20,31-32,34H,21-26H2/t31-,32-/m0/s1 HNBUOFXJDKSBKU-ACHIHNKUSA-N
Q82 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Q82 N11 S1 1
Q82 N7 S1 1
Q82 N2 S1 1
Q82 C1 S1 1
Q82 C2 S1 1
Q82 C3 S1 1
Q82 C4 S1 1
Q82 C5 S1 1
Q82 C6 S1 1
Q82 C7 S1 1
Q82 C20 S1 1
Q82 C21 S1 1
Q82 C22 S1 1
Q82 C23 S1 1
Q82 C24 S1 1
Q82 C25 S1 1
Q82 C31 S1 1
Q82 C32 S1 1
Q82 C33 S1 1
Q82 C34 S1 1
Q82 C35 S1 1
Q82 C36 S1 1
Q82 C37 S1 1
Q82 C61 S1 1
Q82 C62 S1 1
Q82 C63 S1 1
Q82 C64 S1 1
Q82 C65 S1 1
Q82 C66 S1 1
Q82 C67 S1 1
Q82 C70 S1 1
Q82 C71 S1 1
Q82 C72 S1 1
Q82 C73 S1 1
Q82 C74 S1 1
Q82 C75 S1 1
Q82 C20 F1 1
Q82 C21 F1 1
Q82 C22 F1 1
Q82 C23 F1 1
Q82 C24 F1 1
Q82 C25 F1 1
Q82 C32 F1 2
Q82 C33 F1 2
Q82 C34 F1 2
Q82 C35 F1 2
Q82 C36 F1 2
Q82 C37 F1 2
Q82 C62 F1 3
Q82 C63 F1 3
Q82 C64 F1 3
Q82 C65 F1 3
Q82 C66 F1 3
Q82 C67 F1 3
Q82 C70 F1 4
Q82 C71 F1 4
Q82 C72 F1 4
Q82 C73 F1 4
Q82 C74 F1 4
Q82 C75 F1 4
#
_pdbe_chem_comp_rdkit_properties.comp_id Q82
_pdbe_chem_comp_rdkit_properties.exactmw 590.289
_pdbe_chem_comp_rdkit_properties.amw 590.724
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.278
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 311.696
_pdbe_chem_comp_rdkit_properties.tpsa 123.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.442
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.149
_pdbe_chem_comp_rdkit_properties.chi0v 21.422
_pdbe_chem_comp_rdkit_properties.chi1v 11.579
_pdbe_chem_comp_rdkit_properties.chi2v 5.022
_pdbe_chem_comp_rdkit_properties.chi3v 5.022
_pdbe_chem_comp_rdkit_properties.chi4v 3.224
_pdbe_chem_comp_rdkit_properties.chi0n 59.422
_pdbe_chem_comp_rdkit_properties.chi1n 30.212
_pdbe_chem_comp_rdkit_properties.chi2n 5.022
_pdbe_chem_comp_rdkit_properties.chi3n 5.022
_pdbe_chem_comp_rdkit_properties.chi4n 3.224
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.520
_pdbe_chem_comp_rdkit_properties.kappa1 8.805
_pdbe_chem_comp_rdkit_properties.kappa2 14.778
_pdbe_chem_comp_rdkit_properties.kappa3 7.332
_pdbe_chem_comp_rdkit_properties.Phi 2.957
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Q82 UniChem ChEMBL CHEMBL286777
Q82 UniChem PDBe Q82
Q82 UniChem ZINC ZINC000014943484
Q82 UniChem 'PubChem TPHARMA' 15707694
Q82 UniChem BindingDb 1707
Q82 UniChem PubChem 469313
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Q82 N11 1.290 1.566 -0.766 ETKDGv3 1
Q82 O4 0.107 -2.738 -3.360 ETKDGv3 2
Q82 O5 1.182 -3.569 -1.065 ETKDGv3 3
Q82 N7 0.147 -0.239 0.211 ETKDGv3 4
Q82 N2 -0.564 0.640 -1.990 ETKDGv3 5
Q82 C1 0.288 0.735 -0.828 ETKDGv3 6
Q82 C2 -1.230 1.836 -2.552 ETKDGv3 7
Q82 C3 -0.900 -0.686 -2.552 ETKDGv3 8
Q82 C4 0.272 -1.721 -2.401 ETKDGv3 9
Q82 C5 0.411 -2.394 -0.994 ETKDGv3 10
Q82 C6 0.934 -1.481 0.151 ETKDGv3 11
Q82 C7 -0.701 0.062 1.368 ETKDGv3 12
Q82 C20 -1.780 2.744 -1.477 ETKDGv3 13
Q82 C21 -2.803 2.349 -0.699 ETKDGv3 14
Q82 C22 -3.302 3.222 0.383 ETKDGv3 15
Q82 C23 -2.760 4.435 0.580 ETKDGv3 16
Q82 C24 -1.649 4.885 -0.292 ETKDGv3 17
Q82 C25 -1.192 4.090 -1.266 ETKDGv3 18
Q82 C31 -2.280 -1.164 -2.029 ETKDGv3 19
Q82 C32 -2.746 -2.453 -2.663 ETKDGv3 20
Q82 C33 -2.964 -3.554 -1.918 ETKDGv3 21
Q82 C34 -3.422 -4.807 -2.554 ETKDGv3 22
Q82 C35 -3.640 -4.849 -3.873 ETKDGv3 23
Q82 C36 -3.431 -3.641 -4.695 ETKDGv3 24
Q82 C37 -3.013 -2.504 -4.124 ETKDGv3 25
Q82 C61 2.452 -1.153 0.091 ETKDGv3 26
Q82 C62 3.335 -2.283 0.569 ETKDGv3 27
Q82 C63 4.232 -2.857 -0.256 ETKDGv3 28
Q82 C64 5.104 -3.946 0.231 ETKDGv3 29
Q82 C65 5.024 -4.353 1.502 ETKDGv3 30
Q82 C66 4.067 -3.709 2.424 ETKDGv3 31
Q82 C67 3.271 -2.726 1.986 ETKDGv3 32
Q82 C70 0.066 0.874 2.373 ETKDGv3 33
Q82 C71 0.762 0.275 3.353 ETKDGv3 34
Q82 C72 1.560 1.080 4.300 ETKDGv3 35
Q82 C73 1.592 2.420 4.193 ETKDGv3 36
Q82 C74 0.844 3.079 3.096 ETKDGv3 37
Q82 C75 0.122 2.349 2.238 ETKDGv3 38
Q82 C12 1.693 2.438 -1.787 ETKDGv3 39
Q82 N13 2.035 3.157 -2.627 ETKDGv3 40
Q82 C76 2.435 3.245 5.124 ETKDGv3 41
Q82 C26 -3.211 5.299 1.725 ETKDGv3 42
Q82 O76 3.709 3.440 4.573 ETKDGv3 43
Q82 O26 -2.565 4.907 2.905 ETKDGv3 44
Q82 HO4 0.397 -2.368 -4.235 ETKDGv3 45
Q82 HO5 1.964 -3.389 -1.647 ETKDGv3 46
Q82 H21A -0.520 2.385 -3.202 ETKDGv3 47
Q82 H22A -2.067 1.542 -3.221 ETKDGv3 48
Q82 H3 -1.014 -0.537 -3.649 ETKDGv3 49
Q82 H4 1.227 -1.192 -2.623 ETKDGv3 50
Q82 H5 -0.593 -2.729 -0.679 ETKDGv3 51
Q82 H6 0.762 -2.046 1.093 ETKDGv3 52
Q82 H71A -1.075 -0.878 1.830 ETKDGv3 53
Q82 H72A -1.604 0.618 1.043 ETKDGv3 54
Q82 H21 -3.258 1.379 -0.831 ETKDGv3 55
Q82 H22 -4.097 2.862 1.024 ETKDGv3 56
Q82 H24 -1.202 5.860 -0.142 ETKDGv3 57
Q82 H25 -0.388 4.440 -1.900 ETKDGv3 58
Q82 H311 -2.270 -1.231 -0.920 ETKDGv3 59
Q82 H312 -3.042 -0.399 -2.280 ETKDGv3 60
Q82 H33 -2.813 -3.541 -0.846 ETKDGv3 61
Q82 H34 -3.581 -5.690 -1.949 ETKDGv3 62
Q82 H35 -3.976 -5.766 -4.340 ETKDGv3 63
Q82 H36 -3.622 -3.675 -5.760 ETKDGv3 64
Q82 H37 -2.875 -1.621 -4.734 ETKDGv3 65
Q82 H611 2.738 -0.832 -0.933 ETKDGv3 66
Q82 H612 2.656 -0.288 0.759 ETKDGv3 67
Q82 H63 4.323 -2.536 -1.286 ETKDGv3 68
Q82 H64 5.810 -4.412 -0.445 ETKDGv3 69
Q82 H65 5.664 -5.150 1.860 ETKDGv3 70
Q82 H66 4.017 -4.030 3.457 ETKDGv3 71
Q82 H67 2.586 -2.251 2.675 ETKDGv3 72
Q82 H71 0.752 -0.802 3.459 ETKDGv3 73
Q82 H72 2.122 0.574 5.076 ETKDGv3 74
Q82 H74 0.883 4.156 2.982 ETKDGv3 75
Q82 H75 -0.412 2.840 1.437 ETKDGv3 76
Q82 H761 2.513 2.764 6.126 ETKDGv3 77
Q82 H762 1.958 4.236 5.277 ETKDGv3 78
Q82 H261 -4.309 5.198 1.866 ETKDGv3 79
Q82 H262 -3.007 6.372 1.509 ETKDGv3 80
Q82 H76 4.206 2.590 4.699 ETKDGv3 81
Q82 HO6 -1.633 5.243 2.844 ETKDGv3 82
#