data_QBD
#
_chem_comp.id QBD
_chem_comp.name
"4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H28 O8 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-10-10
_chem_comp.pdbx_modified_date 2020-08-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.658
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QBD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6UKY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QBD O5 O1 O 0 1 N N N N N N -21.671 -16.795 -2.490 9.877 3.680 1.206 O5 QBD 1
QBD C23 C1 C 0 1 N N N N N N -20.762 -15.860 -2.405 8.715 3.177 0.762 C23 QBD 2
QBD O6 O2 O 0 1 N N N N N N -19.751 -15.854 -3.062 7.945 3.882 0.154 O6 QBD 3
QBD C22 C2 C 0 1 N N N N N N -21.095 -14.801 -1.402 8.370 1.733 1.022 C22 QBD 4
QBD C21 C3 C 0 1 N N N N N N -21.530 -15.364 -0.063 7.001 1.418 0.414 C21 QBD 5
QBD C20 C4 C 0 1 N N N N N N -20.526 -16.320 0.517 6.656 -0.025 0.674 C20 QBD 6
QBD O4 O3 O 0 1 N N N N N N -19.336 -16.017 0.638 7.429 -0.734 1.285 O4 QBD 7
QBD C19 C5 C 0 1 Y N N N N N -21.000 -17.642 0.876 5.428 -0.556 0.205 C19 QBD 8
QBD S1 S1 S 0 1 Y N N N N N -19.845 -18.779 1.519 4.223 0.354 -0.689 S1 QBD 9
QBD C24 C6 C 0 1 Y N N N N N -22.218 -18.214 0.669 5.029 -1.826 0.378 C24 QBD 10
QBD C25 C7 C 0 1 Y N N N N N -22.287 -19.603 1.029 3.777 -2.145 -0.167 C25 QBD 11
QBD C18 C8 C 0 1 Y N N N N N -21.043 -20.040 1.514 3.171 -1.053 -0.804 C18 QBD 12
QBD C17 C9 C 0 1 Y N N N N N -20.853 -21.345 1.942 1.916 -1.201 -1.402 C17 QBD 13
QBD C26 C10 C 0 1 Y N N N N N -23.336 -20.503 0.987 3.093 -3.385 -0.149 C26 QBD 14
QBD C27 C11 C 0 1 Y N N N N N -23.160 -21.803 1.426 1.861 -3.506 -0.743 C27 QBD 15
QBD O7 O4 O 0 1 N N N N N N -24.134 -22.755 1.358 1.214 -4.702 -0.718 O7 QBD 16
QBD C28 C12 C 0 1 N N N N N N -25.183 -22.552 0.411 1.875 -5.784 -0.059 C28 QBD 17
QBD C C13 C 0 1 Y N N N N N -21.930 -22.234 1.947 1.268 -2.411 -1.370 C QBD 18
QBD C1 C14 C 0 1 N N N N N N -21.684 -23.683 2.296 -0.085 -2.557 -2.018 C1 QBD 19
QBD C2 C15 C 0 1 N N N N N N -20.476 -24.222 1.532 -1.178 -2.357 -0.966 C2 QBD 20
QBD C3 C16 C 0 1 N N N N N N -20.627 -24.369 0.010 -2.551 -2.506 -1.623 C3 QBD 21
QBD C4 C17 C 0 1 Y N N N N N -20.876 -23.093 -0.757 -3.628 -2.309 -0.587 C4 QBD 22
QBD C16 C18 C 0 1 Y N N N N N -19.866 -22.135 -0.947 -4.068 -0.999 -0.272 C16 QBD 23
QBD C9 C19 C 0 1 Y N N N N N -20.171 -20.976 -1.676 -5.071 -0.841 0.695 C9 QBD 24
QBD C8 C20 C 0 1 Y N N N N N -21.424 -20.743 -2.228 -5.614 -1.964 1.325 C8 QBD 25
QBD C6 C21 C 0 1 Y N N N N N -22.382 -21.730 -2.080 -5.165 -3.227 0.998 C6 QBD 26
QBD O O5 O 0 1 N N N N N N -23.619 -21.480 -2.610 -5.695 -4.315 1.613 O QBD 27
QBD C7 C22 C 0 1 N N N N N N -23.920 -20.130 -2.960 -6.714 -4.079 2.587 C7 QBD 28
QBD C5 C23 C 0 1 Y N N N N N -22.122 -22.885 -1.354 -4.172 -3.387 0.032 C5 QBD 29
QBD C15 C24 C 0 1 Y N N N N N -18.506 -22.118 -0.489 -3.635 0.224 -0.804 C15 QBD 30
QBD C10 C25 C 0 1 Y N N N N N -17.820 -21.005 -0.879 -4.240 1.316 -0.310 C10 QBD 31
QBD S S2 S 0 1 Y N N N N N -18.783 -19.942 -1.831 -5.433 0.870 0.897 S QBD 32
QBD C11 C26 C 0 1 N N N N N N -16.478 -20.551 -0.523 -3.953 2.645 -0.707 C11 QBD 33
QBD O1 O6 O 0 1 N N N N N N -16.152 -19.368 -0.667 -3.107 2.856 -1.551 O1 QBD 34
QBD C12 C27 C 0 1 N N N N N N -15.528 -21.561 0.057 -4.697 3.795 -0.081 C12 QBD 35
QBD C13 C28 C 0 1 N N N N N N -14.871 -21.075 1.334 -4.200 5.112 -0.682 C13 QBD 36
QBD C14 C29 C 0 1 N N N N N N -15.862 -20.760 2.410 -4.945 6.263 -0.056 C14 QBD 37
QBD O2 O7 O 0 1 N N N N N N -16.773 -21.684 2.549 -5.787 6.052 0.785 O2 QBD 38
QBD O3 O8 O 0 1 N N N N N N -15.835 -19.751 3.068 -4.673 7.522 -0.432 O3 QBD 39
QBD H1 H1 H 0 1 N N N N N N -21.403 -17.440 -3.134 10.054 4.611 1.016 H1 QBD 40
QBD H2 H2 H 0 1 N N N N N N -20.204 -14.175 -1.246 9.125 1.092 0.567 H2 QBD 41
QBD H3 H3 H 0 1 N N N N N N -21.912 -14.183 -1.804 8.340 1.554 2.096 H3 QBD 42
QBD H4 H4 H 0 1 N N N N N N -21.670 -14.530 0.641 6.246 2.060 0.869 H4 QBD 43
QBD H5 H5 H 0 1 N N N N N N -22.484 -15.894 -0.197 7.030 1.597 -0.660 H5 QBD 44
QBD H6 H6 H 0 1 N N N N N N -23.060 -17.670 0.268 5.632 -2.553 0.901 H6 QBD 45
QBD H7 H7 H 0 1 N N N N N N -19.877 -21.672 2.270 1.452 -0.357 -1.891 H7 QBD 46
QBD H8 H8 H 0 1 N N N N N N -24.298 -20.189 0.609 3.543 -4.240 0.335 H8 QBD 47
QBD H9 H9 H 0 1 N N N N N N -25.893 -23.390 0.464 1.252 -6.677 -0.112 H9 QBD 48
QBD H10 H10 H 0 1 N N N N N N -25.707 -21.613 0.641 2.830 -5.978 -0.547 H10 QBD 49
QBD H11 H11 H 0 1 N N N N N N -24.757 -22.496 -0.602 2.047 -5.523 0.985 H11 QBD 50
QBD H12 H12 H 0 1 N N N N N N -22.573 -24.275 2.031 -0.194 -1.809 -2.803 H12 QBD 51
QBD H13 H13 H 0 1 N N N N N N -21.496 -23.768 3.376 -0.175 -3.554 -2.450 H13 QBD 52
QBD H14 H14 H 0 1 N N N N N N -20.241 -25.216 1.940 -1.068 -3.106 -0.181 H14 QBD 53
QBD H15 H15 H 0 1 N N N N N N -19.633 -23.540 1.718 -1.088 -1.361 -0.533 H15 QBD 54
QBD H16 H16 H 0 1 N N N N N N -21.472 -25.046 -0.180 -2.661 -1.757 -2.408 H16 QBD 55
QBD H17 H17 H 0 1 N N N N N N -19.702 -24.820 -0.378 -2.641 -3.502 -2.056 H17 QBD 56
QBD H18 H18 H 0 1 N N N N N N -21.642 -19.825 -2.753 -6.383 -1.842 2.074 H18 QBD 57
QBD H19 H19 H 0 1 N N N N N N -24.939 -20.076 -3.371 -7.555 -3.569 2.117 H19 QBD 58
QBD H20 H20 H 0 1 N N N N N N -23.851 -19.495 -2.064 -7.050 -5.030 3.000 H20 QBD 59
QBD H21 H21 H 0 1 N N N N N N -23.201 -19.778 -3.715 -6.313 -3.456 3.388 H21 QBD 60
QBD H22 H22 H 0 1 N N N N N N -22.894 -23.633 -1.249 -3.825 -4.379 -0.219 H22 QBD 61
QBD H23 H23 H 0 1 N N N N N N -18.069 -22.907 0.105 -2.867 0.283 -1.560 H23 QBD 62
QBD H24 H24 H 0 1 N N N N N N -16.085 -22.484 0.276 -5.764 3.687 -0.276 H24 QBD 63
QBD H25 H25 H 0 1 N N N N N N -14.744 -21.774 -0.684 -4.523 3.799 0.995 H25 QBD 64
QBD H26 H26 H 0 1 N N N N N N -14.191 -21.858 1.700 -3.134 5.220 -0.487 H26 QBD 65
QBD H27 H27 H 0 1 N N N N N N -14.295 -20.165 1.109 -4.375 5.109 -1.758 H27 QBD 66
QBD H28 H28 H 0 1 N N N N N N -16.563 -19.751 3.678 -5.177 8.227 -0.002 H28 QBD 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QBD O6 C23 DOUB N N 1
QBD C7 O SING N N 2
QBD O C6 SING N N 3
QBD O5 C23 SING N N 4
QBD C23 C22 SING N N 5
QBD C8 C6 DOUB Y N 6
QBD C8 C9 SING Y N 7
QBD C6 C5 SING Y N 8
QBD S C9 SING Y N 9
QBD S C10 SING Y N 10
QBD C9 C16 DOUB Y N 11
QBD C22 C21 SING N N 12
QBD C5 C4 DOUB Y N 13
QBD C16 C4 SING Y N 14
QBD C16 C15 SING Y N 15
QBD C10 C11 SING N N 16
QBD C10 C15 DOUB Y N 17
QBD C4 C3 SING N N 18
QBD O1 C11 DOUB N N 19
QBD C11 C12 SING N N 20
QBD C21 C20 SING N N 21
QBD C3 C2 SING N N 22
QBD C12 C13 SING N N 23
QBD C28 O7 SING N N 24
QBD C20 O4 DOUB N N 25
QBD C20 C19 SING N N 26
QBD C24 C19 DOUB Y N 27
QBD C24 C25 SING Y N 28
QBD C19 S1 SING Y N 29
QBD C26 C25 DOUB Y N 30
QBD C26 C27 SING Y N 31
QBD C25 C18 SING Y N 32
QBD C13 C14 SING N N 33
QBD O7 C27 SING N N 34
QBD C27 C DOUB Y N 35
QBD C18 S1 SING Y N 36
QBD C18 C17 DOUB Y N 37
QBD C2 C1 SING N N 38
QBD C17 C SING Y N 39
QBD C C1 SING N N 40
QBD C14 O2 DOUB N N 41
QBD C14 O3 SING N N 42
QBD O5 H1 SING N N 43
QBD C22 H2 SING N N 44
QBD C22 H3 SING N N 45
QBD C21 H4 SING N N 46
QBD C21 H5 SING N N 47
QBD C24 H6 SING N N 48
QBD C17 H7 SING N N 49
QBD C26 H8 SING N N 50
QBD C28 H9 SING N N 51
QBD C28 H10 SING N N 52
QBD C28 H11 SING N N 53
QBD C1 H12 SING N N 54
QBD C1 H13 SING N N 55
QBD C2 H14 SING N N 56
QBD C2 H15 SING N N 57
QBD C3 H16 SING N N 58
QBD C3 H17 SING N N 59
QBD C8 H18 SING N N 60
QBD C7 H19 SING N N 61
QBD C7 H20 SING N N 62
QBD C7 H21 SING N N 63
QBD C5 H22 SING N N 64
QBD C15 H23 SING N N 65
QBD C12 H24 SING N N 66
QBD C12 H25 SING N N 67
QBD C13 H26 SING N N 68
QBD C13 H27 SING N N 69
QBD O3 H28 SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QBD SMILES ACDLabs 12.01 OC(CCC(=O)c1sc2c(c1)cc(c(c2)CCCc4c3cc(C(CCC(=O)O)=O)sc3cc(c4)OC)OC)=O
QBD InChI InChI 1.03 InChI=1S/C29H28O8S2/c1-36-19-10-16(20-15-27(39-25(20)14-19)22(31)7-9-29(34)35)4-3-5-17-12-24-18(11-23(17)37-2)13-26(38-24)21(30)6-8-28(32)33/h10-15H,3-9H2,1-2H3,(H,32,33)(H,34,35)
QBD InChIKey InChI 1.03 FAUOOVCIHNKOFE-UHFFFAOYSA-N
QBD SMILES_CANONICAL CACTVS 3.385 COc1cc(CCCc2cc3sc(cc3cc2OC)C(=O)CCC(O)=O)c4cc(sc4c1)C(=O)CCC(O)=O
QBD SMILES CACTVS 3.385 COc1cc(CCCc2cc3sc(cc3cc2OC)C(=O)CCC(O)=O)c4cc(sc4c1)C(=O)CCC(O)=O
QBD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1cc(c2cc(sc2c1)C(=O)CCC(=O)O)CCCc3cc4c(cc3OC)cc(s4)C(=O)CCC(=O)O
QBD SMILES "OpenEye OEToolkits" 2.0.7 COc1cc(c2cc(sc2c1)C(=O)CCC(=O)O)CCCc3cc4c(cc3OC)cc(s4)C(=O)CCC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QBD "SYSTEMATIC NAME" ACDLabs 12.01 "4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid"
QBD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[5-methoxy-6-[3-[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzothiophen-4-yl]propyl]-1-benzothiophen-2-yl]-4-oxidanylidene-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QBD 'Create component' 2019-10-10 RCSB
QBD 'Initial release' 2020-08-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QBD O5 O 3.930 6.230 1
QBD C23 C 4.680 7.529 2
QBD O6 O 3.930 8.828 3
QBD C22 C 6.180 7.529 4
QBD C21 C 6.930 6.230 5
QBD C20 C 8.430 6.230 6
QBD O4 O 9.180 7.529 7
QBD C19 C 9.180 4.931 8
QBD S1 S 10.663 4.777 9
QBD C24 C 8.572 3.569 10
QBD C25 C 9.678 2.569 11
QBD C18 C 10.977 3.319 12
QBD C17 C 12.276 2.569 13
QBD C26 C 9.678 1.069 14
QBD C27 C 10.977 0.319 15
QBD O7 O 10.977 -1.181 16
QBD C28 C 9.678 -1.931 17
QBD C C 12.276 1.069 18
QBD C1 C 13.575 0.319 19
QBD C2 C 13.575 -1.181 20
QBD C3 C 14.874 -1.931 21
QBD C4 C 14.874 -3.431 22
QBD C16 C 16.173 -4.181 23
QBD C9 C 16.173 -5.681 24
QBD C8 C 14.874 -6.431 25
QBD C6 C 13.575 -5.681 26
QBD O O 12.276 -6.431 27
QBD C7 C 12.276 -7.931 28
QBD C5 C 13.575 -4.181 29
QBD C15 C 17.592 -3.724 30
QBD C10 C 18.468 -4.931 31
QBD S S 17.592 -6.138 32
QBD C11 C 19.968 -4.931 33
QBD O1 O 20.718 -3.632 34
QBD C12 C 20.718 -6.230 35
QBD C13 C 22.218 -6.230 36
QBD C14 C 22.968 -7.529 37
QBD O2 O 24.468 -7.529 38
QBD O3 O 22.218 -8.828 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QBD O6 C23 DOUBLE NONE 1
QBD C7 O SINGLE NONE 2
QBD O C6 SINGLE NONE 3
QBD O5 C23 SINGLE NONE 4
QBD C23 C22 SINGLE NONE 5
QBD C8 C6 DOUBLE NONE 6
QBD C8 C9 SINGLE NONE 7
QBD C6 C5 SINGLE NONE 8
QBD S C9 SINGLE NONE 9
QBD S C10 SINGLE NONE 10
QBD C9 C16 DOUBLE NONE 11
QBD C22 C21 SINGLE NONE 12
QBD C5 C4 DOUBLE NONE 13
QBD C16 C4 SINGLE NONE 14
QBD C16 C15 SINGLE NONE 15
QBD C10 C11 SINGLE NONE 16
QBD C10 C15 DOUBLE NONE 17
QBD C4 C3 SINGLE NONE 18
QBD O1 C11 DOUBLE NONE 19
QBD C11 C12 SINGLE NONE 20
QBD C21 C20 SINGLE NONE 21
QBD C3 C2 SINGLE NONE 22
QBD C12 C13 SINGLE NONE 23
QBD C28 O7 SINGLE NONE 24
QBD C20 O4 DOUBLE NONE 25
QBD C20 C19 SINGLE NONE 26
QBD C24 C19 DOUBLE NONE 27
QBD C24 C25 SINGLE NONE 28
QBD C19 S1 SINGLE NONE 29
QBD C26 C25 DOUBLE NONE 30
QBD C26 C27 SINGLE NONE 31
QBD C25 C18 SINGLE NONE 32
QBD C13 C14 SINGLE NONE 33
QBD O7 C27 SINGLE NONE 34
QBD C27 C DOUBLE NONE 35
QBD C18 S1 SINGLE NONE 36
QBD C18 C17 DOUBLE NONE 37
QBD C2 C1 SINGLE NONE 38
QBD C17 C SINGLE NONE 39
QBD C C1 SINGLE NONE 40
QBD C14 O2 DOUBLE NONE 41
QBD C14 O3 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QBD MurckoScaffold S1 scaffold c1cc(CCCc2ccc3ccsc3c2)c2ccsc2c1 InChI=1S/C19H16S2/c1(3-14-7-8-16-9-11-21-19(16)13-14)4-15-5-2-6-18-17(15)10-12-20-18/h2,5-13H,1,3-4H2 CEYNKYBOJIOKMQ-UHFFFAOYSA-N
QBD benzothiophen F1 fragment c1ccc2sccc2c1 InChI=1S/C8H6S/c1-2-4-8-7(3-1)5-6-9-8/h1-6H FCEHBMOGCRZNNI-UHFFFAOYSA-N
QBD phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
QBD thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QBD C19 S1 1
QBD S1 S1 1
QBD C24 S1 1
QBD C25 S1 1
QBD C18 S1 1
QBD C17 S1 1
QBD C26 S1 1
QBD C27 S1 1
QBD C S1 1
QBD C1 S1 1
QBD C2 S1 1
QBD C3 S1 1
QBD C4 S1 1
QBD C16 S1 1
QBD C9 S1 1
QBD C8 S1 1
QBD C6 S1 1
QBD C5 S1 1
QBD C15 S1 1
QBD C10 S1 1
QBD S S1 1
QBD C18 F1 1
QBD C25 F1 1
QBD C24 F1 1
QBD C19 F1 1
QBD S1 F1 1
QBD C26 F1 1
QBD C27 F1 1
QBD C F1 1
QBD C17 F1 1
QBD C9 F1 2
QBD C16 F1 2
QBD C15 F1 2
QBD C10 F1 2
QBD S F1 2
QBD C4 F1 2
QBD C5 F1 2
QBD C6 F1 2
QBD C8 F1 2
QBD C25 F2 1
QBD C26 F2 1
QBD C27 F2 1
QBD C F2 1
QBD C17 F2 1
QBD C18 F2 1
QBD C4 F2 2
QBD C5 F2 2
QBD C6 F2 2
QBD C8 F2 2
QBD C9 F2 2
QBD C16 F2 2
QBD C19 F3 1
QBD C24 F3 1
QBD C25 F3 1
QBD C18 F3 1
QBD S1 F3 1
QBD C9 F3 2
QBD C16 F3 2
QBD C15 F3 2
QBD C10 F3 2
QBD S F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id QBD
_pdbe_chem_comp_rdkit_properties.exactmw 568.123
_pdbe_chem_comp_rdkit_properties.amw 568.669
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.310
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 271.851
_pdbe_chem_comp_rdkit_properties.tpsa 127.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.403
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.484
_pdbe_chem_comp_rdkit_properties.chi0v 20.215
_pdbe_chem_comp_rdkit_properties.chi1v 11.491
_pdbe_chem_comp_rdkit_properties.chi2v 6.311
_pdbe_chem_comp_rdkit_properties.chi3v 6.311
_pdbe_chem_comp_rdkit_properties.chi4v 4.554
_pdbe_chem_comp_rdkit_properties.chi0n 46.582
_pdbe_chem_comp_rdkit_properties.chi1n 23.674
_pdbe_chem_comp_rdkit_properties.chi2n 4.307
_pdbe_chem_comp_rdkit_properties.chi3n 4.307
_pdbe_chem_comp_rdkit_properties.chi4n 2.796
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.760
_pdbe_chem_comp_rdkit_properties.kappa1 9.416
_pdbe_chem_comp_rdkit_properties.kappa2 12.398
_pdbe_chem_comp_rdkit_properties.kappa3 6.820
_pdbe_chem_comp_rdkit_properties.Phi 2.993
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
QBD UniChem PDBe QBD
QBD UniChem PubChem 139531504
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QBD O5 7.598 -4.166 -3.978 ETKDGv3 1
QBD C23 7.656 -2.852 -4.431 ETKDGv3 2
QBD O6 7.042 -2.521 -5.481 ETKDGv3 3
QBD C22 8.419 -1.825 -3.652 ETKDGv3 4
QBD C21 7.486 -0.962 -2.789 ETKDGv3 5
QBD C20 6.803 -1.735 -1.684 ETKDGv3 6
QBD O4 7.341 -2.778 -1.225 ETKDGv3 7
QBD C19 5.544 -1.264 -1.074 ETKDGv3 8
QBD S1 4.608 -2.234 0.118 ETKDGv3 9
QBD C24 4.962 -0.073 -1.304 ETKDGv3 10
QBD C25 3.714 0.139 -0.542 ETKDGv3 11
QBD C18 3.368 -0.986 0.308 ETKDGv3 12
QBD C17 2.285 -0.991 1.080 ETKDGv3 13
QBD C26 2.947 1.231 -0.566 ETKDGv3 14
QBD C27 1.716 1.277 0.287 ETKDGv3 15
QBD O7 0.901 2.420 0.311 ETKDGv3 16
QBD C28 1.137 3.589 -0.465 ETKDGv3 17
QBD C 1.385 0.199 1.054 ETKDGv3 18
QBD C1 0.148 0.195 1.928 ETKDGv3 19
QBD C2 -0.795 -0.989 1.641 ETKDGv3 20
QBD C3 -1.304 -1.058 0.189 ETKDGv3 21
QBD C4 -2.104 0.161 -0.205 ETKDGv3 22
QBD C16 -3.467 0.399 0.337 ETKDGv3 23
QBD C9 -4.124 1.512 0.018 ETKDGv3 24
QBD C8 -3.552 2.525 -0.880 ETKDGv3 25
QBD C6 -2.326 2.314 -1.403 ETKDGv3 26
QBD O -1.708 3.225 -2.274 ETKDGv3 27
QBD C7 -2.269 4.471 -2.674 ETKDGv3 28
QBD C5 -1.582 1.075 -1.049 ETKDGv3 29
QBD C15 -4.236 -0.514 1.218 ETKDGv3 30
QBD C10 -5.445 -0.047 1.552 ETKDGv3 31
QBD S -5.725 1.542 0.781 ETKDGv3 32
QBD C11 -6.439 -0.734 2.399 ETKDGv3 33
QBD O1 -7.612 -0.275 2.444 ETKDGv3 34
QBD C12 -6.100 -2.001 3.149 ETKDGv3 35
QBD C13 -6.970 -2.220 4.396 ETKDGv3 36
QBD C14 -6.716 -1.170 5.434 ETKDGv3 37
QBD O2 -5.703 -1.250 6.179 ETKDGv3 38
QBD O3 -7.582 -0.087 5.553 ETKDGv3 39
QBD H1 7.075 -4.869 -4.486 ETKDGv3 40
QBD H2 9.184 -2.321 -3.017 ETKDGv3 41
QBD H3 8.961 -1.165 -4.364 ETKDGv3 42
QBD H4 8.080 -0.145 -2.327 ETKDGv3 43
QBD H5 6.727 -0.496 -3.454 ETKDGv3 44
QBD H6 5.370 0.677 -1.968 ETKDGv3 45
QBD H7 2.073 -1.843 1.712 ETKDGv3 46
QBD H8 3.224 2.065 -1.196 ETKDGv3 47
QBD H9 2.112 4.041 -0.187 ETKDGv3 48
QBD H10 0.332 4.325 -0.264 ETKDGv3 49
QBD H11 1.125 3.338 -1.547 ETKDGv3 50
QBD H12 0.477 0.130 2.987 ETKDGv3 51
QBD H13 -0.432 1.137 1.840 ETKDGv3 52
QBD H14 -1.659 -0.920 2.335 ETKDGv3 53
QBD H15 -0.279 -1.943 1.880 ETKDGv3 54
QBD H16 -0.443 -1.210 -0.499 ETKDGv3 55
QBD H17 -1.947 -1.957 0.079 ETKDGv3 56
QBD H18 -4.128 3.411 -1.109 ETKDGv3 57
QBD H19 -1.559 4.987 -3.352 ETKDGv3 58
QBD H20 -3.223 4.304 -3.218 ETKDGv3 59
QBD H21 -2.442 5.114 -1.785 ETKDGv3 60
QBD H22 -0.598 0.927 -1.476 ETKDGv3 61
QBD H23 -3.864 -1.478 1.533 ETKDGv3 62
QBD H24 -6.238 -2.861 2.460 ETKDGv3 63
QBD H25 -5.035 -1.987 3.466 ETKDGv3 64
QBD H26 -6.733 -3.216 4.829 ETKDGv3 65
QBD H27 -8.046 -2.228 4.120 ETKDGv3 66
QBD H28 -7.416 0.638 6.241 ETKDGv3 67
#