data_QBQ
#
_chem_comp.id QBQ
_chem_comp.name 7-deaza-GTP
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H17 N4 O14 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-06-02
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 522.192
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QBQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Z86
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QBQ O3 O1 O 0 1 N N N N N N 44.224 -16.326 -76.781 2.924 -2.897 -0.588 O3 QBQ 1
QBQ C4 C1 C 0 1 Y N N N N N 38.393 -13.453 -81.546 -3.746 0.756 -1.624 C4 QBQ 2
QBQ C5 C2 C 0 1 N N R N N N 39.938 -12.330 -79.864 -3.303 -0.699 0.381 C5 QBQ 3
QBQ O4 O2 O 0 1 N N N N N N 41.959 -16.450 -75.695 3.368 -0.482 -0.001 O4 QBQ 4
QBQ C6 C3 C 0 1 N N R N N N 41.536 -13.143 -78.453 -1.393 -1.973 0.363 C6 QBQ 5
QBQ N1 N1 N 0 1 N N N N N N 40.123 -10.420 -82.132 -5.972 0.749 1.163 N1 QBQ 6
QBQ C7 C4 C 0 1 N N N N N N 42.085 -14.504 -78.141 -0.144 -2.320 -0.450 C7 QBQ 7
QBQ C8 C5 C 0 1 N N S N N N 40.302 -12.735 -77.628 -2.523 -2.986 0.074 C8 QBQ 8
QBQ N2 N2 N 0 1 Y N N N N N 39.302 -12.475 -81.171 -4.079 0.284 -0.380 N2 QBQ 9
QBQ C9 C6 C 0 1 N N R N N N 39.164 -12.814 -78.657 -3.808 -2.128 0.086 C9 QBQ 10
QBQ O5 O3 O 0 1 N N N N N N 40.037 -17.813 -74.752 5.621 -1.423 0.976 O5 QBQ 11
QBQ C10 C7 C 0 1 N N N N N N 38.103 -10.885 -84.141 -6.850 2.478 -0.777 C10 QBQ 12
QBQ O6 O4 O 0 1 N N N N N N 41.728 -16.570 -73.160 5.515 -0.395 -1.326 O6 QBQ 13
QBQ N3 N3 N 0 1 N N N N N N 38.970 -9.810 -84.119 -7.539 2.302 0.373 N3 QBQ 14
QBQ O7 O5 O 0 1 N N N N N N 40.138 -15.260 -74.614 5.311 1.166 0.646 O7 QBQ 15
QBQ O8 O6 O 0 1 N N N N N N 39.355 -13.258 -73.419 6.539 3.190 1.791 O8 QBQ 16
QBQ N N4 N 0 1 N N N N N N 40.609 -8.454 -83.219 -7.797 1.282 2.482 N QBQ 17
QBQ C C8 C 0 1 N N N N N N 39.916 -9.593 -83.152 -7.077 1.441 1.324 C QBQ 18
QBQ O O7 O 0 1 N N N N N N 41.127 -13.083 -79.837 -1.925 -0.697 -0.054 O QBQ 19
QBQ C1 C9 C 0 1 Y N N N N N 39.303 -11.503 -82.136 -5.238 0.863 0.047 C1 QBQ 20
QBQ C2 C10 C 0 1 Y N N N N N 38.321 -11.823 -83.079 -5.661 1.738 -0.963 C2 QBQ 21
QBQ C3 C11 C 0 1 Y N N N N N 37.763 -13.076 -82.698 -4.666 1.647 -2.030 C3 QBQ 22
QBQ O1 O8 O 0 1 N N N N N N 42.761 -14.341 -76.881 0.923 -1.444 -0.082 O1 QBQ 23
QBQ O10 O9 O 0 1 N N N N N N 37.758 -14.522 -74.913 7.831 1.304 0.721 O10 QBQ 24
QBQ O11 O10 O 0 1 N N N N N N 40.456 -11.414 -77.118 -2.576 -3.982 1.097 O11 QBQ 25
QBQ O12 O11 O 0 1 N N N N N N 38.000 -12.032 -78.373 -4.694 -2.569 1.117 O12 QBQ 26
QBQ O13 O12 O 0 1 N N N N N N 37.173 -10.927 -84.948 -7.252 3.244 -1.636 O13 QBQ 27
QBQ O2 O13 O 0 1 N N N N N N 43.674 -14.958 -74.626 2.297 -1.156 -2.305 O2 QBQ 28
QBQ O9 O14 O 0 1 N N N N N N 38.574 -15.532 -72.699 6.632 2.903 -0.820 O9 QBQ 29
QBQ P P1 P 0 1 N N N N N N 43.234 -15.532 -75.971 2.390 -1.525 -0.741 P QBQ 30
QBQ P1 P2 P 0 1 N N N N N N 40.977 -16.600 -74.450 4.966 -0.286 0.044 P1 QBQ 31
QBQ P2 P3 P 0 1 N N N N N N 38.876 -14.617 -73.894 6.605 2.123 0.587 P2 QBQ 32
QBQ H7 H1 H 0 1 N N N N N N 38.211 -14.372 -81.009 -2.875 0.459 -2.190 H7 QBQ 33
QBQ H H2 H 0 1 N N N N N N 40.178 -11.268 -79.708 -3.364 -0.488 1.449 H QBQ 34
QBQ H1 H3 H 0 1 N N N N N N 42.326 -12.398 -78.275 -1.160 -1.958 1.428 H1 QBQ 35
QBQ H9 H4 H 0 1 N N N N N N 41.272 -15.240 -78.054 0.146 -3.352 -0.247 H9 QBQ 36
QBQ H8 H5 H 0 1 N N N N N N 42.790 -14.827 -78.921 -0.359 -2.206 -1.512 H8 QBQ 37
QBQ H2 H6 H 0 1 N N N N N N 40.132 -13.464 -76.822 -2.379 -3.449 -0.902 H2 QBQ 38
QBQ H3 H7 H 0 1 N N N N N N 38.889 -13.869 -78.803 -4.303 -2.166 -0.884 H3 QBQ 39
QBQ H11 H8 H 0 1 N N N N N N 40.063 -18.423 -74.024 5.306 -1.411 1.891 H11 QBQ 40
QBQ H16 H9 H 0 1 N N N N N N 38.902 -9.143 -84.861 -8.359 2.797 0.526 H16 QBQ 41
QBQ H12 H10 H 0 1 N N N N N N 38.857 -12.576 -73.855 7.289 3.800 1.818 H12 QBQ 42
QBQ H5 H11 H 0 1 N N N N N N 41.275 -8.231 -82.507 -8.621 1.778 2.613 H5 QBQ 43
QBQ H4 H12 H 0 1 N N N N N N 40.462 -7.824 -83.981 -7.483 0.674 3.169 H4 QBQ 44
QBQ H6 H13 H 0 1 N N N N N N 36.991 -13.623 -83.219 -4.669 2.191 -2.963 H6 QBQ 45
QBQ H14 H14 H 0 1 N N N N N N 41.165 -11.399 -76.486 -3.268 -4.644 0.965 H14 QBQ 46
QBQ H15 H15 H 0 1 N N N N N N 37.560 -12.384 -77.608 -5.042 -3.461 0.982 H15 QBQ 47
QBQ H10 H16 H 0 1 N N N N N N 44.580 -15.193 -74.462 1.954 -0.269 -2.480 H10 QBQ 48
QBQ H13 H17 H 0 1 N N N N N N 37.705 -15.903 -72.796 5.858 3.461 -0.976 H13 QBQ 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QBQ O13 C10 DOUB N N 1
QBQ C10 N3 SING N N 2
QBQ C10 C2 SING N N 3
QBQ N3 C SING N N 4
QBQ N C SING N N 5
QBQ C N1 DOUB N N 6
QBQ C2 C3 SING Y N 7
QBQ C2 C1 DOUB Y N 8
QBQ C3 C4 DOUB Y N 9
QBQ C1 N1 SING N N 10
QBQ C1 N2 SING Y N 11
QBQ C4 N2 SING Y N 12
QBQ N2 C5 SING N N 13
QBQ C5 O SING N N 14
QBQ C5 C9 SING N N 15
QBQ O C6 SING N N 16
QBQ C9 O12 SING N N 17
QBQ C9 C8 SING N N 18
QBQ C6 C7 SING N N 19
QBQ C6 C8 SING N N 20
QBQ C7 O1 SING N N 21
QBQ C8 O11 SING N N 22
QBQ O1 P SING N N 23
QBQ O3 P DOUB N N 24
QBQ P O4 SING N N 25
QBQ P O2 SING N N 26
QBQ O4 P1 SING N N 27
QBQ O10 P2 DOUB N N 28
QBQ O5 P1 SING N N 29
QBQ O7 P1 SING N N 30
QBQ O7 P2 SING N N 31
QBQ P1 O6 DOUB N N 32
QBQ P2 O8 SING N N 33
QBQ P2 O9 SING N N 34
QBQ C4 H7 SING N N 35
QBQ C5 H SING N N 36
QBQ C6 H1 SING N N 37
QBQ C7 H9 SING N N 38
QBQ C7 H8 SING N N 39
QBQ C8 H2 SING N N 40
QBQ C9 H3 SING N N 41
QBQ O5 H11 SING N N 42
QBQ N3 H16 SING N N 43
QBQ O8 H12 SING N N 44
QBQ N H5 SING N N 45
QBQ N H4 SING N N 46
QBQ C3 H6 SING N N 47
QBQ O11 H14 SING N N 48
QBQ O12 H15 SING N N 49
QBQ O2 H10 SING N N 50
QBQ O9 H13 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QBQ InChI InChI 1.03 InChI=1S/C11H17N4O14P3/c12-11-13-8-4(9(18)14-11)1-2-15(8)10-7(17)6(16)5(27-10)3-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-2,5-7,10,16-17H,3H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,13,14,18)/t5-,6-,7-,10-/m1/s1
QBQ InChIKey InChI 1.03 NOXMCJDDSWCSIE-DAGMQNCNSA-N
QBQ SMILES_CANONICAL CACTVS 3.385 NC1=Nc2n(ccc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
QBQ SMILES CACTVS 3.385 NC1=Nc2n(ccc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
QBQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
QBQ SMILES "OpenEye OEToolkits" 2.0.7 c1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id QBQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QBQ 'Create component' 2020-06-02 PDBE
QBQ 'Initial release' 2020-12-09 RCSB
QBQ 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id QBQ
_pdbx_chem_comp_synonyms.name
"[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id QBQ
_pdbe_chem_comp_synonyms.name
'[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QBQ O3 O 15.697 -1.960 1
QBQ C4 C 9.997 2.565 2
QBQ C5 C 9.588 -0.068 3
QBQ O4 O 16.032 -4.055 4
QBQ C6 C 11.018 -2.029 5
QBQ N1 N 6.404 1.065 6
QBQ C7 C 12.233 -2.908 7
QBQ C8 C 9.592 -2.495 8
QBQ N2 N 9.122 1.358 9
QBQ C9 C 8.708 -1.283 10
QBQ O5 O 18.014 -4.812 11
QBQ C10 C 6.404 4.065 12
QBQ O6 O 16.789 -2.073 13
QBQ N3 N 5.104 3.315 14
QBQ O7 O 18.771 -2.830 15
QBQ O8 O 20.865 -2.495 16
QBQ N N 3.805 1.065 17
QBQ C C 5.104 1.815 18
QBQ O O 11.015 -0.529 19
QBQ C1 C 7.702 1.815 20
QBQ C2 C 7.702 3.315 21
QBQ C3 C 9.122 3.772 22
QBQ O1 O 13.602 -2.296 23
QBQ O10 O 21.201 -4.589 24
QBQ O11 O 9.131 -3.922 25
QBQ O12 O 7.208 -1.285 26
QBQ O13 O 6.404 5.565 27
QBQ O2 O 13.938 -4.391 28
QBQ O9 O 19.106 -4.925 29
QBQ P P 14.817 -3.175 30
QBQ P1 P 17.401 -3.442 31
QBQ P2 P 19.986 -3.710 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QBQ O13 C10 DOUBLE NONE 1
QBQ C10 N3 SINGLE NONE 2
QBQ C10 C2 SINGLE NONE 3
QBQ N3 C SINGLE NONE 4
QBQ N C SINGLE NONE 5
QBQ C N1 DOUBLE NONE 6
QBQ C2 C3 SINGLE NONE 7
QBQ C2 C1 DOUBLE NONE 8
QBQ C3 C4 DOUBLE NONE 9
QBQ C1 N1 SINGLE NONE 10
QBQ C1 N2 SINGLE NONE 11
QBQ C4 N2 SINGLE NONE 12
QBQ C5 N2 SINGLE BEGINDASH 13
QBQ C5 O SINGLE NONE 14
QBQ C5 C9 SINGLE NONE 15
QBQ O C6 SINGLE NONE 16
QBQ C9 O12 SINGLE BEGINWEDGE 17
QBQ C9 C8 SINGLE NONE 18
QBQ C6 C7 SINGLE BEGINDASH 19
QBQ C6 C8 SINGLE NONE 20
QBQ C7 O1 SINGLE NONE 21
QBQ C8 O11 SINGLE BEGINWEDGE 22
QBQ O1 P SINGLE NONE 23
QBQ O3 P DOUBLE NONE 24
QBQ P O4 SINGLE NONE 25
QBQ P O2 SINGLE BEGINWEDGE 26
QBQ O4 P1 SINGLE NONE 27
QBQ O10 P2 DOUBLE NONE 28
QBQ P1 O5 SINGLE BEGINDASH 29
QBQ O7 P1 SINGLE NONE 30
QBQ O7 P2 SINGLE NONE 31
QBQ P1 O6 DOUBLE NONE 32
QBQ P2 O8 SINGLE NONE 33
QBQ P2 O9 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QBQ MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ccn2[C@H]1CCCO1' InChI=1S/C10H11N3O2/c14-10-7-3-4-13(8-2-1-5-15-8)9(7)11-6-12-10/h3-4,6,8H,1-2,5H2,(H,11,12,14)/t8-/m1/s1 KMILJNWZZSWZDI-MRVPVSSYSA-N
QBQ phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
QBQ pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
QBQ pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
QBQ ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QBQ C4 S1 1
QBQ C5 S1 1
QBQ C6 S1 1
QBQ N1 S1 1
QBQ C8 S1 1
QBQ N2 S1 1
QBQ C9 S1 1
QBQ C10 S1 1
QBQ N3 S1 1
QBQ C S1 1
QBQ O S1 1
QBQ C1 S1 1
QBQ C2 S1 1
QBQ C3 S1 1
QBQ O13 S1 1
QBQ O4 F1 1
QBQ P F1 1
QBQ O3 F1 1
QBQ O1 F1 1
QBQ O2 F1 1
QBQ O4 F1 2
QBQ P1 F1 2
QBQ O6 F1 2
QBQ O5 F1 2
QBQ O7 F1 2
QBQ O7 F1 3
QBQ P2 F1 3
QBQ O10 F1 3
QBQ O8 F1 3
QBQ O9 F1 3
QBQ C2 F2 1
QBQ C10 F2 1
QBQ N3 F2 1
QBQ C F2 1
QBQ N1 F2 1
QBQ C1 F2 1
QBQ C4 F3 1
QBQ C3 F3 1
QBQ C2 F3 1
QBQ C1 F3 1
QBQ N2 F3 1
QBQ C9 F4 1
QBQ C8 F4 1
QBQ C6 F4 1
QBQ O F4 1
QBQ C5 F4 1
QBQ C7 F4 1
QBQ O1 F4 1
QBQ O11 F4 1
QBQ O12 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id QBQ
_pdbe_chem_comp_rdkit_properties.exactmw 521.995
_pdbe_chem_comp_rdkit_properties.amw 522.193
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.455
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 200.739
_pdbe_chem_comp_rdkit_properties.tpsa 286.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.640
_pdbe_chem_comp_rdkit_properties.CrippenMR 97.584
_pdbe_chem_comp_rdkit_properties.chi0v 17.029
_pdbe_chem_comp_rdkit_properties.chi1v 11.586
_pdbe_chem_comp_rdkit_properties.chi2v 6.523
_pdbe_chem_comp_rdkit_properties.chi3v 6.523
_pdbe_chem_comp_rdkit_properties.chi4v 4.654
_pdbe_chem_comp_rdkit_properties.chi0n 31.346
_pdbe_chem_comp_rdkit_properties.chi1n 14.996
_pdbe_chem_comp_rdkit_properties.chi2n 3.008
_pdbe_chem_comp_rdkit_properties.chi3n 3.008
_pdbe_chem_comp_rdkit_properties.chi4n 1.979
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.490
_pdbe_chem_comp_rdkit_properties.kappa1 10.839
_pdbe_chem_comp_rdkit_properties.kappa2 8.699
_pdbe_chem_comp_rdkit_properties.kappa3 5.703
_pdbe_chem_comp_rdkit_properties.Phi 2.947
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
QBQ UniChem ChEMBL CHEMBL4553467
QBQ UniChem PDBe QBQ
QBQ UniChem 'PubChem TPHARMA' 14934100
QBQ UniChem PubChem 135430959
QBQ UniChem BRENDA 247566
QBQ UniChem Nikkaji J1.638.433J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QBQ O3 3.150 -1.697 2.267 ETKDGv3 1
QBQ C4 -1.022 1.105 -0.350 ETKDGv3 2
QBQ C5 -2.067 -1.121 -1.152 ETKDGv3 3
QBQ O4 1.837 0.277 1.142 ETKDGv3 4
QBQ C6 -0.346 -2.626 -1.186 ETKDGv3 5
QBQ N1 -4.342 0.027 0.673 ETKDGv3 6
QBQ C7 1.072 -2.116 -0.903 ETKDGv3 7
QBQ C8 -0.752 -2.400 -2.645 ETKDGv3 8
QBQ N2 -2.132 0.224 -0.575 ETKDGv3 9
QBQ C9 -1.511 -1.099 -2.572 ETKDGv3 10
QBQ O5 3.574 1.634 -0.524 ETKDGv3 11
QBQ C10 -3.433 2.234 2.165 ETKDGv3 12
QBQ O6 2.461 2.771 1.549 ETKDGv3 13
QBQ N3 -4.698 1.610 2.428 ETKDGv3 14
QBQ O7 4.340 1.028 2.112 ETKDGv3 15
QBQ O8 5.216 3.643 1.634 ETKDGv3 16
QBQ N -6.360 -0.162 1.892 ETKDGv3 17
QBQ C -5.111 0.476 1.631 ETKDGv3 18
QBQ O -1.256 -1.947 -0.345 ETKDGv3 19
QBQ C1 -3.082 0.655 0.390 ETKDGv3 20
QBQ C2 -2.638 1.685 1.074 ETKDGv3 21
QBQ C3 -1.294 1.993 0.605 ETKDGv3 22
QBQ O1 1.384 -2.354 0.452 ETKDGv3 23
QBQ O10 6.269 1.578 0.405 ETKDGv3 24
QBQ O11 -1.598 -3.437 -3.076 ETKDGv3 25
QBQ O12 -2.548 -1.031 -3.517 ETKDGv3 26
QBQ O13 -3.030 3.208 2.853 ETKDGv3 27
QBQ O2 3.820 -1.194 -0.214 ETKDGv3 28
QBQ O9 6.841 1.845 2.936 ETKDGv3 29
QBQ P 2.580 -1.243 0.942 ETKDGv3 30
QBQ P1 3.055 1.461 1.080 ETKDGv3 31
QBQ P2 5.672 2.014 1.725 ETKDGv3 32
QBQ H7 -0.072 1.040 -0.863 ETKDGv3 33
QBQ H -3.089 -1.561 -1.171 ETKDGv3 34
QBQ H1 -0.377 -3.712 -0.945 ETKDGv3 35
QBQ H9 1.106 -1.035 -1.177 ETKDGv3 36
QBQ H8 1.794 -2.668 -1.543 ETKDGv3 37
QBQ H2 0.122 -2.305 -3.332 ETKDGv3 38
QBQ H3 -0.805 -0.249 -2.714 ETKDGv3 39
QBQ H11 2.741 1.737 -1.049 ETKDGv3 40
QBQ H16 -5.310 1.968 3.195 ETKDGv3 41
QBQ H12 6.060 4.132 1.460 ETKDGv3 42
QBQ H5 -6.666 -0.983 1.324 ETKDGv3 43
QBQ H4 -6.982 0.186 2.655 ETKDGv3 44
QBQ H6 -0.622 2.751 0.983 ETKDGv3 45
QBQ H14 -1.010 -4.205 -3.302 ETKDGv3 46
QBQ H15 -2.115 -0.886 -4.399 ETKDGv3 47
QBQ H10 4.169 -2.121 -0.250 ETKDGv3 48
QBQ H13 7.007 0.870 2.992 ETKDGv3 49
#