data_QDY
#
_chem_comp.id QDY
_chem_comp.name
"tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H39 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-10-17
_chem_comp.pdbx_modified_date 2020-01-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 569.757
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QDY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6UNJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QDY C10 C1 C 0 1 N N N N N N -29.582 -33.795 135.755 -1.524 -0.738 0.432 C10 QDY 1
QDY C12 C2 C 0 1 N N S N N N -28.950 -32.087 133.297 1.303 -0.812 0.169 C12 QDY 2
QDY C13 C3 C 0 1 N N N N N N -28.524 -32.227 131.829 1.365 -2.304 0.505 C13 QDY 3
QDY C14 C4 C 0 1 Y N N N N N -27.047 -32.349 131.623 2.539 -2.566 1.413 C14 QDY 4
QDY C15 C5 C 0 1 Y N N N N N -26.229 -31.223 131.698 2.415 -2.371 2.776 C15 QDY 5
QDY C16 C6 C 0 1 Y N N N N N -24.856 -31.308 131.518 3.492 -2.611 3.609 C16 QDY 6
QDY C17 C7 C 0 1 Y N N N N N -24.255 -32.534 131.268 4.693 -3.045 3.079 C17 QDY 7
QDY C18 C8 C 0 1 Y N N N N N -25.047 -33.667 131.186 4.816 -3.240 1.716 C18 QDY 8
QDY C19 C9 C 0 1 Y N N N N N -26.423 -33.575 131.367 3.738 -3.006 0.883 C19 QDY 9
QDY C01 C10 C 0 1 N N N N N N -22.742 -32.479 136.667 -3.494 4.159 2.086 C01 QDY 10
QDY C02 C11 C 0 1 N N N N N N -23.520 -33.684 136.154 -2.392 4.275 1.031 C02 QDY 11
QDY C03 C12 C 0 1 N N N N N N -23.732 -33.534 134.626 -2.406 5.683 0.432 C03 QDY 12
QDY C04 C13 C 0 1 N N N N N N -22.671 -34.943 136.371 -1.033 4.011 1.682 C04 QDY 13
QDY C06 C14 C 0 1 N N N N N N -25.926 -33.058 136.525 -2.642 2.003 0.343 C06 QDY 14
QDY C09 C15 C 0 1 N N R N N N -28.541 -32.931 136.564 -2.871 -0.363 -0.189 C09 QDY 15
QDY C20 C16 C 0 1 N N N N N N -30.219 -31.242 133.448 2.511 -0.430 -0.646 C20 QDY 16
QDY C23 C17 C 0 1 N N N N N N -31.450 -29.303 134.563 4.867 0.163 -0.830 C23 QDY 17
QDY C24 C18 C 0 1 N N N N N N -31.158 -27.809 134.293 6.069 0.354 0.098 C24 QDY 18
QDY C25 C19 C 0 1 Y N N N N N -29.930 -27.545 133.451 7.277 0.737 -0.718 C25 QDY 19
QDY C26 C20 C 0 1 Y N N N N N -30.005 -27.426 132.052 8.115 -0.237 -1.227 C26 QDY 20
QDY C28 C21 C 0 1 Y N N N N N -27.732 -27.076 131.787 9.470 1.347 -2.207 C28 QDY 21
QDY C29 C22 C 0 1 Y N N N N N -27.537 -27.180 133.167 8.681 2.375 -1.727 C29 QDY 22
QDY C30 C23 C 0 1 Y N N N N N -28.640 -27.417 133.988 7.559 2.070 -0.972 C30 QDY 23
QDY C31 C24 C 0 1 N N N N N N -29.116 -32.577 138.002 -3.985 -0.591 0.835 C31 QDY 24
QDY C32 C25 C 0 1 Y N N N N N -29.378 -31.108 138.292 -5.322 -0.339 0.187 C32 QDY 25
QDY C33 C26 C 0 1 Y N N N N N -30.661 -30.615 138.744 -5.962 -1.362 -0.533 C33 QDY 26
QDY C34 C27 C 0 1 Y N N N N N -31.788 -31.458 138.957 -5.379 -2.634 -0.668 C34 QDY 27
QDY C35 C28 C 0 1 Y N N N N N -32.995 -30.972 139.384 -6.028 -3.601 -1.373 C35 QDY 28
QDY C36 C29 C 0 1 Y N N N N N -33.171 -29.599 139.637 -7.264 -3.349 -1.965 C36 QDY 29
QDY C37 C30 C 0 1 Y N N N N N -32.121 -28.749 139.445 -7.859 -2.130 -1.855 C37 QDY 30
QDY C38 C31 C 0 1 Y N N N N N -30.854 -29.236 138.999 -7.219 -1.107 -1.136 C38 QDY 31
QDY C39 C32 C 0 1 Y N N N N N -29.768 -28.338 138.806 -7.802 0.165 -1.000 C39 QDY 32
QDY C40 C33 C 0 1 Y N N N N N -28.563 -28.813 138.381 -7.153 1.132 -0.296 C40 QDY 33
QDY C41 C34 C 0 1 Y N N N N N -28.370 -30.194 138.124 -5.919 0.879 0.301 C41 QDY 34
QDY N08 N1 N 0 1 N N N N N N -27.230 -33.621 136.651 -2.851 1.047 -0.584 N08 QDY 35
QDY N22 N2 N 0 1 N N N N N N -30.287 -30.171 134.356 3.693 -0.209 -0.037 N22 QDY 36
QDY N27 N3 N 0 1 Y N N N N N -28.956 -27.194 131.227 9.171 0.089 -1.946 N27 QDY 37
QDY O05 O1 O 0 1 N N N N N N -24.830 -33.854 136.790 -2.623 3.300 -0.020 O05 QDY 38
QDY O07 O2 O 0 1 N N N N N N -25.856 -31.875 136.193 -2.469 1.696 1.506 O07 QDY 39
QDY O21 O3 O 0 1 N N N N N N -31.229 -31.444 132.789 2.420 -0.320 -1.850 O21 QDY 40
QDY S11 S1 S 0 1 N N N N N N -29.254 -33.793 133.935 -0.203 -0.469 -0.782 S11 QDY 41
QDY H1 H1 H 0 1 N N N N N N -30.589 -33.388 135.931 -1.342 -0.118 1.309 H1 QDY 42
QDY H2 H2 H 0 1 N N N N N N -29.537 -34.832 136.119 -1.538 -1.788 0.725 H2 QDY 43
QDY H3 H3 H 0 1 N N N N N N -28.131 -31.663 133.896 1.289 -0.232 1.092 H3 QDY 44
QDY H4 H4 H 0 1 N N N N N N -28.875 -31.339 131.283 0.444 -2.602 1.006 H4 QDY 45
QDY H5 H5 H 0 1 N N N N N N -29.004 -33.126 131.416 1.481 -2.878 -0.414 H5 QDY 46
QDY H6 H6 H 0 1 N N N N N N -26.675 -30.261 131.901 1.477 -2.032 3.190 H6 QDY 47
QDY H7 H7 H 0 1 N N N N N N -24.251 -30.415 131.573 3.396 -2.459 4.674 H7 QDY 48
QDY H8 H8 H 0 1 N N N N N N -23.185 -32.603 131.139 5.534 -3.232 3.729 H8 QDY 49
QDY H9 H9 H 0 1 N N N N N N -24.594 -34.626 130.981 5.754 -3.579 1.301 H9 QDY 50
QDY H10 H10 H 0 1 N N N N N N -27.024 -34.471 131.309 3.834 -3.158 -0.182 H10 QDY 51
QDY H11 H11 H 0 1 N N N N N N -22.587 -32.577 137.752 -3.321 4.891 2.874 H11 QDY 52
QDY H12 H12 H 0 1 N N N N N N -21.767 -32.429 136.160 -4.463 4.347 1.622 H12 QDY 53
QDY H13 H13 H 0 1 N N N N N N -23.310 -31.560 136.460 -3.485 3.156 2.512 H13 QDY 54
QDY H14 H14 H 0 1 N N N N N N -24.339 -32.639 134.426 -1.621 5.766 -0.320 H14 QDY 55
QDY H15 H15 H 0 1 N N N N N N -22.756 -33.434 134.129 -3.374 5.871 -0.032 H15 QDY 56
QDY H16 H16 H 0 1 N N N N N N -24.251 -34.423 134.239 -2.233 6.415 1.220 H16 QDY 57
QDY H17 H17 H 0 1 N N N N N N -22.496 -35.087 137.447 -1.023 3.008 2.109 H17 QDY 58
QDY H18 H18 H 0 1 N N N N N N -23.201 -35.817 135.966 -0.248 4.094 0.930 H18 QDY 59
QDY H19 H19 H 0 1 N N N N N N -21.706 -34.828 135.855 -0.860 4.744 2.471 H19 QDY 60
QDY H20 H20 H 0 1 N N N N N N -28.405 -31.983 136.022 -3.052 -0.984 -1.066 H20 QDY 61
QDY H21 H21 H 0 1 N N N N N N -31.784 -29.410 135.606 4.667 1.093 -1.361 H21 QDY 62
QDY H22 H22 H 0 1 N N N N N N -32.253 -29.629 133.886 5.085 -0.627 -1.549 H22 QDY 63
QDY H23 H23 H 0 1 N N N N N N -31.023 -27.306 135.262 5.851 1.144 0.817 H23 QDY 64
QDY H24 H24 H 0 1 N N N N N N -32.027 -27.379 133.774 6.269 -0.576 0.629 H24 QDY 65
QDY H25 H25 H 0 1 N N N N N N -30.979 -27.528 131.598 7.902 -1.278 -1.033 H25 QDY 66
QDY H26 H26 H 0 1 N N N N N N -26.879 -26.896 131.149 10.345 1.576 -2.796 H26 QDY 67
QDY H27 H27 H 0 1 N N N N N N -26.549 -27.079 133.591 8.935 3.404 -1.938 H27 QDY 68
QDY H28 H28 H 0 1 N N N N N N -28.498 -27.503 135.055 6.920 2.853 -0.591 H28 QDY 69
QDY H29 H29 H 0 1 N N N N N N -30.068 -33.115 138.122 -3.943 -1.619 1.195 H29 QDY 70
QDY H30 H30 H 0 1 N N N N N N -28.394 -32.940 138.748 -3.853 0.094 1.673 H30 QDY 71
QDY H31 H31 H 0 1 N N N N N N -31.688 -32.518 138.776 -4.422 -2.843 -0.215 H31 QDY 72
QDY H32 H32 H 0 1 N N N N N N -33.822 -31.651 139.528 -5.578 -4.577 -1.475 H32 QDY 73
QDY H33 H33 H 0 1 N N N N N N -34.124 -29.223 139.978 -7.758 -4.134 -2.519 H33 QDY 74
QDY H34 H34 H 0 1 N N N N N N -32.249 -27.693 139.633 -8.817 -1.949 -2.320 H34 QDY 75
QDY H35 H35 H 0 1 N N N N N N -29.898 -27.283 138.996 -8.759 0.375 -1.454 H35 QDY 76
QDY H36 H36 H 0 1 N N N N N N -27.742 -28.126 138.238 -7.603 2.108 -0.194 H36 QDY 77
QDY H37 H37 H 0 1 N N N N N N -27.402 -30.535 137.787 -5.427 1.662 0.859 H37 QDY 78
QDY H38 H38 H 0 1 N N N N N N -27.266 -34.606 136.819 -2.988 1.293 -1.512 H38 QDY 79
QDY H39 H39 H 0 1 N N N N N N -29.473 -29.986 134.907 3.766 -0.296 0.926 H39 QDY 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QDY C18 C17 DOUB Y N 1
QDY C18 C19 SING Y N 2
QDY N27 C28 DOUB Y N 3
QDY N27 C26 SING Y N 4
QDY C17 C16 SING Y N 5
QDY C19 C14 DOUB Y N 6
QDY C16 C15 DOUB Y N 7
QDY C14 C15 SING Y N 8
QDY C14 C13 SING N N 9
QDY C28 C29 SING Y N 10
QDY C13 C12 SING N N 11
QDY C26 C25 DOUB Y N 12
QDY O21 C20 DOUB N N 13
QDY C29 C30 DOUB Y N 14
QDY C12 C20 SING N N 15
QDY C12 S11 SING N N 16
QDY C20 N22 SING N N 17
QDY C25 C30 SING Y N 18
QDY C25 C24 SING N N 19
QDY S11 C10 SING N N 20
QDY C24 C23 SING N N 21
QDY N22 C23 SING N N 22
QDY C03 C02 SING N N 23
QDY C10 C09 SING N N 24
QDY C02 C04 SING N N 25
QDY C02 C01 SING N N 26
QDY C02 O05 SING N N 27
QDY O07 C06 DOUB N N 28
QDY C06 N08 SING N N 29
QDY C06 O05 SING N N 30
QDY C09 N08 SING N N 31
QDY C09 C31 SING N N 32
QDY C31 C32 SING N N 33
QDY C41 C32 DOUB Y N 34
QDY C41 C40 SING Y N 35
QDY C32 C33 SING Y N 36
QDY C40 C39 DOUB Y N 37
QDY C33 C34 DOUB Y N 38
QDY C33 C38 SING Y N 39
QDY C39 C38 SING Y N 40
QDY C34 C35 SING Y N 41
QDY C38 C37 DOUB Y N 42
QDY C35 C36 DOUB Y N 43
QDY C37 C36 SING Y N 44
QDY C10 H1 SING N N 45
QDY C10 H2 SING N N 46
QDY C12 H3 SING N N 47
QDY C13 H4 SING N N 48
QDY C13 H5 SING N N 49
QDY C15 H6 SING N N 50
QDY C16 H7 SING N N 51
QDY C17 H8 SING N N 52
QDY C18 H9 SING N N 53
QDY C19 H10 SING N N 54
QDY C01 H11 SING N N 55
QDY C01 H12 SING N N 56
QDY C01 H13 SING N N 57
QDY C03 H14 SING N N 58
QDY C03 H15 SING N N 59
QDY C03 H16 SING N N 60
QDY C04 H17 SING N N 61
QDY C04 H18 SING N N 62
QDY C04 H19 SING N N 63
QDY C09 H20 SING N N 64
QDY C23 H21 SING N N 65
QDY C23 H22 SING N N 66
QDY C24 H23 SING N N 67
QDY C24 H24 SING N N 68
QDY C26 H25 SING N N 69
QDY C28 H26 SING N N 70
QDY C29 H27 SING N N 71
QDY C30 H28 SING N N 72
QDY C31 H29 SING N N 73
QDY C31 H30 SING N N 74
QDY C34 H31 SING N N 75
QDY C35 H32 SING N N 76
QDY C36 H33 SING N N 77
QDY C37 H34 SING N N 78
QDY C39 H35 SING N N 79
QDY C40 H36 SING N N 80
QDY C41 H37 SING N N 81
QDY N08 H38 SING N N 82
QDY N22 H39 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QDY SMILES ACDLabs 12.01 C(C(NC(OC(C)(C)C)=O)Cc2c1ccccc1ccc2)SC(C(NCCc3cccnc3)=O)Cc4ccccc4
QDY InChI InChI 1.03 InChI=1S/C34H39N3O3S/c1-34(2,3)40-33(39)37-29(22-28-16-9-15-27-14-7-8-17-30(27)28)24-41-31(21-25-11-5-4-6-12-25)32(38)36-20-18-26-13-10-19-35-23-26/h4-17,19,23,29,31H,18,20-22,24H2,1-3H3,(H,36,38)(H,37,39)/t29-,31+/m1/s1
QDY InChIKey InChI 1.03 GBALYMNAVPEZPA-VEEOACQBSA-N
QDY SMILES_CANONICAL CACTVS 3.385 CC(C)(C)OC(=O)N[C@@H](CS[C@@H](Cc1ccccc1)C(=O)NCCc2cccnc2)Cc3cccc4ccccc34
QDY SMILES CACTVS 3.385 CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCc2cccnc2)Cc3cccc4ccccc34
QDY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)(C)OC(=O)N[C@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3ccccc3)C(=O)NCCc4cccnc4
QDY SMILES "OpenEye OEToolkits" 2.0.7 CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCc4cccnc4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QDY "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"
QDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{R})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(2-pyridin-3-ylethylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QDY 'Create component' 2019-10-17 RCSB
QDY 'Initial release' 2020-02-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QDY C10 C 13.392 0.999 1
QDY C12 C 10.794 0.999 2
QDY C13 C 10.794 2.498 3
QDY C14 C 9.495 3.249 4
QDY C15 C 9.495 4.748 5
QDY C16 C 8.196 5.498 6
QDY C17 C 6.897 4.748 7
QDY C18 C 6.897 3.249 8
QDY C19 C 8.196 2.498 9
QDY C01 C 11.343 -2.952 10
QDY C02 C 12.093 -4.252 11
QDY C03 C 10.794 -5.002 12
QDY C04 C 12.843 -5.550 13
QDY C06 C 13.392 -2.002 14
QDY C09 C 14.691 0.248 15
QDY C20 C 9.495 0.248 16
QDY C23 C 8.196 -2.002 17
QDY C24 C 6.897 -1.252 18
QDY C25 C 5.598 -2.002 19
QDY C26 C 5.598 -3.501 20
QDY C28 C 3.000 -3.501 21
QDY C29 C 3.000 -2.002 22
QDY C30 C 4.299 -1.252 23
QDY C31 C 15.990 0.999 24
QDY C32 C 15.990 2.498 25
QDY C33 C 17.290 3.249 26
QDY C34 C 18.630 2.446 27
QDY C35 C 19.989 3.217 28
QDY C36 C 19.989 4.780 29
QDY C37 C 18.630 5.550 30
QDY C38 C 17.290 4.748 31
QDY C39 C 15.990 5.498 32
QDY C40 C 14.691 4.748 33
QDY C41 C 14.691 3.249 34
QDY N08 N 14.691 -1.252 35
QDY N22 N 9.495 -1.252 36
QDY N27 N 4.299 -4.252 37
QDY O05 O 13.392 -3.501 38
QDY O07 O 12.093 -1.252 39
QDY O21 O 8.196 0.999 40
QDY S11 S 12.093 0.248 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QDY C18 C17 DOUBLE NONE 1
QDY C18 C19 SINGLE NONE 2
QDY N27 C28 SINGLE NONE 3
QDY N27 C26 DOUBLE NONE 4
QDY C17 C16 SINGLE NONE 5
QDY C19 C14 DOUBLE NONE 6
QDY C16 C15 DOUBLE NONE 7
QDY C14 C15 SINGLE NONE 8
QDY C14 C13 SINGLE NONE 9
QDY C28 C29 DOUBLE NONE 10
QDY C12 C13 SINGLE BEGINDASH 11
QDY C26 C25 SINGLE NONE 12
QDY O21 C20 DOUBLE NONE 13
QDY C29 C30 SINGLE NONE 14
QDY C12 C20 SINGLE NONE 15
QDY C12 S11 SINGLE NONE 16
QDY C20 N22 SINGLE NONE 17
QDY C25 C30 DOUBLE NONE 18
QDY C25 C24 SINGLE NONE 19
QDY S11 C10 SINGLE NONE 20
QDY C24 C23 SINGLE NONE 21
QDY N22 C23 SINGLE NONE 22
QDY C03 C02 SINGLE NONE 23
QDY C09 C10 SINGLE BEGINWEDGE 24
QDY C02 C04 SINGLE NONE 25
QDY C02 C01 SINGLE NONE 26
QDY C02 O05 SINGLE NONE 27
QDY O07 C06 DOUBLE NONE 28
QDY C06 N08 SINGLE NONE 29
QDY C06 O05 SINGLE NONE 30
QDY C09 N08 SINGLE NONE 31
QDY C09 C31 SINGLE NONE 32
QDY C31 C32 SINGLE NONE 33
QDY C41 C32 DOUBLE NONE 34
QDY C41 C40 SINGLE NONE 35
QDY C32 C33 SINGLE NONE 36
QDY C40 C39 DOUBLE NONE 37
QDY C33 C34 DOUBLE NONE 38
QDY C33 C38 SINGLE NONE 39
QDY C39 C38 SINGLE NONE 40
QDY C34 C35 SINGLE NONE 41
QDY C38 C37 DOUBLE NONE 42
QDY C35 C36 DOUBLE NONE 43
QDY C37 C36 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QDY MurckoScaffold S1 scaffold 'O=C(NCCc1cccnc1)[C@H](Cc1ccccc1)SCCCc1cccc2ccccc12' InChI=1S/C29H30N2OS/c32-29(31-19-17-24-11-7-18-30-22-24)28(21-23-9-2-1-3-10-23)33-20-8-15-26-14-6-13-25-12-4-5-16-27(25)26/h1-7,9-14,16,18,22,28H,8,15,17,19-21H2,(H,31,32)/t28-/m0/s1 MIRQAYFDGILHIX-NDEPHWFRSA-N
QDY amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
QDY napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
QDY phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
QDY pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QDY C10 S1 1
QDY C12 S1 1
QDY C13 S1 1
QDY C14 S1 1
QDY C15 S1 1
QDY C16 S1 1
QDY C17 S1 1
QDY C18 S1 1
QDY C19 S1 1
QDY C09 S1 1
QDY C20 S1 1
QDY C23 S1 1
QDY C24 S1 1
QDY C25 S1 1
QDY C26 S1 1
QDY C28 S1 1
QDY C29 S1 1
QDY C30 S1 1
QDY C31 S1 1
QDY C32 S1 1
QDY C33 S1 1
QDY C34 S1 1
QDY C35 S1 1
QDY C36 S1 1
QDY C37 S1 1
QDY C38 S1 1
QDY C39 S1 1
QDY C40 S1 1
QDY C41 S1 1
QDY N22 S1 1
QDY N27 S1 1
QDY O21 S1 1
QDY S11 S1 1
QDY N22 F1 1
QDY C20 F1 1
QDY O21 F1 1
QDY C12 F1 1
QDY C35 F2 1
QDY C36 F2 1
QDY C37 F2 1
QDY C38 F2 1
QDY C33 F2 1
QDY C34 F2 1
QDY C32 F2 1
QDY C41 F2 1
QDY C40 F2 1
QDY C39 F2 1
QDY C14 F3 1
QDY C19 F3 1
QDY C18 F3 1
QDY C17 F3 1
QDY C16 F3 1
QDY C15 F3 1
QDY C32 F3 2
QDY C41 F3 2
QDY C40 F3 2
QDY C39 F3 2
QDY C38 F3 2
QDY C33 F3 2
QDY C33 F3 3
QDY C34 F3 3
QDY C35 F3 3
QDY C36 F3 3
QDY C37 F3 3
QDY C38 F3 3
QDY C26 F4 1
QDY C25 F4 1
QDY C30 F4 1
QDY C29 F4 1
QDY C28 F4 1
QDY N27 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id QDY
_pdbe_chem_comp_rdkit_properties.exactmw 569.271
_pdbe_chem_comp_rdkit_properties.amw 569.771
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.324
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 301.761
_pdbe_chem_comp_rdkit_properties.tpsa 80.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.781
_pdbe_chem_comp_rdkit_properties.CrippenMR 165.148
_pdbe_chem_comp_rdkit_properties.chi0v 20.791
_pdbe_chem_comp_rdkit_properties.chi1v 11.383
_pdbe_chem_comp_rdkit_properties.chi2v 4.764
_pdbe_chem_comp_rdkit_properties.chi3v 4.764
_pdbe_chem_comp_rdkit_properties.chi4v 3.050
_pdbe_chem_comp_rdkit_properties.chi0n 58.975
_pdbe_chem_comp_rdkit_properties.chi1n 29.961
_pdbe_chem_comp_rdkit_properties.chi2n 3.987
_pdbe_chem_comp_rdkit_properties.chi3n 3.987
_pdbe_chem_comp_rdkit_properties.chi4n 2.469
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.840
_pdbe_chem_comp_rdkit_properties.kappa1 7.754
_pdbe_chem_comp_rdkit_properties.kappa2 14.692
_pdbe_chem_comp_rdkit_properties.kappa3 9.938
_pdbe_chem_comp_rdkit_properties.Phi 2.779
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
QDY UniChem ChEMBL CHEMBL4644724
QDY UniChem PDBe QDY
QDY UniChem PubChem 145865312
QDY UniChem BindingDb 50541359
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QDY C10 1.005 -1.524 0.020 ETKDGv3 1
QDY C12 -1.567 -0.574 -0.214 ETKDGv3 2
QDY C13 -2.292 -1.621 -1.079 ETKDGv3 3
QDY C14 -3.119 -0.972 -2.160 ETKDGv3 4
QDY C15 -2.451 -0.412 -3.361 ETKDGv3 5
QDY C16 -3.170 0.209 -4.305 ETKDGv3 6
QDY C17 -4.633 0.341 -4.153 ETKDGv3 7
QDY C18 -5.242 -0.159 -3.071 ETKDGv3 8
QDY C19 -4.451 -0.844 -2.027 ETKDGv3 9
QDY C01 6.264 1.440 -3.875 ETKDGv3 10
QDY C02 5.269 2.017 -2.857 ETKDGv3 11
QDY C03 4.369 3.045 -3.568 ETKDGv3 12
QDY C04 6.057 2.684 -1.713 ETKDGv3 13
QDY C06 3.476 0.995 -1.391 ETKDGv3 14
QDY C09 1.861 -0.247 0.133 ETKDGv3 15
QDY C20 -2.542 0.330 0.493 ETKDGv3 16
QDY C23 -4.520 0.626 2.056 ETKDGv3 17
QDY C24 -5.637 0.947 1.060 ETKDGv3 18
QDY C25 -6.671 1.837 1.693 ETKDGv3 19
QDY C26 -6.516 3.310 1.646 ETKDGv3 20
QDY C28 -8.526 3.539 2.924 ETKDGv3 21
QDY C29 -8.698 2.215 3.000 ETKDGv3 22
QDY C30 -7.717 1.319 2.358 ETKDGv3 23
QDY C31 2.546 -0.090 1.515 ETKDGv3 24
QDY C32 3.657 -1.100 1.767 ETKDGv3 25
QDY C33 3.441 -2.391 2.502 ETKDGv3 26
QDY C34 2.270 -2.733 3.080 ETKDGv3 27
QDY C35 2.125 -4.029 3.774 ETKDGv3 28
QDY C36 3.158 -4.873 3.848 ETKDGv3 29
QDY C37 4.453 -4.508 3.245 ETKDGv3 30
QDY C38 4.592 -3.333 2.611 ETKDGv3 31
QDY C39 5.888 -2.942 2.030 ETKDGv3 32
QDY C40 6.022 -1.763 1.421 ETKDGv3 33
QDY C41 4.888 -0.826 1.288 ETKDGv3 34
QDY N08 2.857 -0.217 -0.945 ETKDGv3 35
QDY N22 -3.496 -0.204 1.424 ETKDGv3 36
QDY N27 -7.392 4.080 2.225 ETKDGv3 37
QDY O05 4.489 0.920 -2.358 ETKDGv3 38
QDY O07 3.117 2.103 -0.909 ETKDGv3 39
QDY O21 -2.517 1.568 0.254 ETKDGv3 40
QDY S11 -0.517 -1.410 1.034 ETKDGv3 41
QDY H1 0.731 -1.699 -1.042 ETKDGv3 42
QDY H2 1.589 -2.410 0.342 ETKDGv3 43
QDY H3 -0.930 0.051 -0.876 ETKDGv3 44
QDY H4 -2.924 -2.277 -0.440 ETKDGv3 45
QDY H5 -1.542 -2.283 -1.563 ETKDGv3 46
QDY H6 -1.378 -0.502 -3.476 ETKDGv3 47
QDY H7 -2.681 0.617 -5.180 ETKDGv3 48
QDY H8 -5.211 0.844 -4.917 ETKDGv3 49
QDY H9 -6.313 -0.061 -2.956 ETKDGv3 50
QDY H10 -4.960 -1.232 -1.154 ETKDGv3 51
QDY H11 5.720 0.941 -4.705 ETKDGv3 52
QDY H12 6.907 2.240 -4.302 ETKDGv3 53
QDY H13 6.918 0.684 -3.388 ETKDGv3 54
QDY H14 3.744 2.540 -4.336 ETKDGv3 55
QDY H15 4.985 3.824 -4.068 ETKDGv3 56
QDY H16 3.695 3.559 -2.853 ETKDGv3 57
QDY H17 6.645 1.921 -1.157 ETKDGv3 58
QDY H18 6.757 3.448 -2.114 ETKDGv3 59
QDY H19 5.380 3.190 -0.996 ETKDGv3 60
QDY H20 1.178 0.620 -0.004 ETKDGv3 61
QDY H21 -4.951 0.075 2.921 ETKDGv3 62
QDY H22 -4.059 1.561 2.443 ETKDGv3 63
QDY H23 -5.214 1.454 0.166 ETKDGv3 64
QDY H24 -6.107 0.001 0.712 ETKDGv3 65
QDY H25 -5.673 3.753 1.132 ETKDGv3 66
QDY H26 -9.237 4.208 3.391 ETKDGv3 67
QDY H27 -9.548 1.802 3.529 ETKDGv3 68
QDY H28 -7.851 0.247 2.434 ETKDGv3 69
QDY H29 2.975 0.934 1.573 ETKDGv3 70
QDY H30 1.789 -0.102 2.322 ETKDGv3 71
QDY H31 1.408 -2.089 3.057 ETKDGv3 72
QDY H32 1.176 -4.294 4.222 ETKDGv3 73
QDY H33 3.049 -5.822 4.357 ETKDGv3 74
QDY H34 5.285 -5.196 3.329 ETKDGv3 75
QDY H35 6.742 -3.604 2.102 ETKDGv3 76
QDY H36 6.982 -1.486 1.005 ETKDGv3 77
QDY H37 5.076 0.107 0.771 ETKDGv3 78
QDY H38 3.159 -1.112 -1.392 ETKDGv3 79
QDY H39 -3.439 -1.211 1.695 ETKDGv3 80
#