data_QOL
#
_chem_comp.id QOL
_chem_comp.name '8-azanyl-4-[2-(hydroxymethyl)-3-oxidanyl-propoxy]quinoline-2-carbaldehyde'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C14 H16 N2 O5'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-03
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 292.287
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QOL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5L70
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QOL OZ1 O1 O 0 1 N N N N N N 60.924 21.941 51.342 -6.066 0.542 0.594 OZ1 QOL 1
QOL CE1 C1 C 0 1 N N N N N N 60.363 22.636 50.198 -4.766 1.099 0.387 CE1 QOL 2
QOL CD C2 C 0 1 N N N N N N 60.438 21.781 48.908 -3.738 -0.030 0.285 CD QOL 3
QOL CE2 C3 C 0 1 N N N N N N 61.830 21.166 48.716 -4.022 -0.868 -0.963 CE2 QOL 4
QOL OZ2 O2 O 0 1 N N N N N N 61.953 20.790 47.342 -3.136 -1.988 -0.996 OZ2 QOL 5
QOL CG C4 C 0 1 N N N N N N 59.365 20.676 48.966 -2.333 0.568 0.189 CG QOL 6
QOL OB O3 O 0 1 N N N N N N 59.725 19.438 48.277 -1.365 -0.484 0.212 OB QOL 7
QOL C8 C5 C 0 1 Y N N N N N 58.731 18.474 48.252 -0.061 -0.122 0.134 C8 QOL 8
QOL C9 C6 C 0 1 Y N N N N N 57.434 18.694 48.733 0.304 1.208 0.038 C9 QOL 9
QOL C10 C7 C 0 1 Y N N N Y N 56.467 17.705 48.703 1.661 1.548 -0.040 C10 QOL 10
QOL C C8 C 0 1 N N N N Y Y 55.186 17.963 49.214 2.043 2.976 -0.142 C QOL 11
QOL O O4 O 0 1 N N N N Y Y 54.809 19.094 49.512 1.185 3.835 -0.157 O QOL 12
QOL N11 N1 N 0 1 Y N N N Y N 56.814 16.519 48.172 2.606 0.627 -0.024 N11 QOL 13
QOL C7 C9 C 0 1 Y N N N Y N 58.042 16.235 47.695 2.317 -0.669 0.067 C7 QOL 14
QOL C6 C10 C 0 1 Y N N N N N 59.040 17.213 47.715 0.966 -1.093 0.155 C6 QOL 15
QOL C5 C11 C 0 1 Y N N N N N 60.301 16.881 47.208 0.671 -2.460 0.250 C5 QOL 16
QOL C4 C12 C 0 1 Y N N N N N 60.554 15.603 46.685 1.680 -3.376 0.259 C4 QOL 17
QOL C3 C13 C 0 1 Y N N N N N 59.554 14.638 46.672 3.010 -2.977 0.173 C3 QOL 18
QOL CA C14 C 0 1 Y N N N Y N 58.284 14.950 47.190 3.343 -1.643 0.088 C2 QOL 19
QOL N N2 N 0 1 N N N Y Y N 57.181 14.182 47.266 4.679 -1.257 0.002 N QOL 20
QOL H1 H1 H 0 1 N N N N N N 60.861 22.494 52.112 -6.769 1.201 0.668 H1 QOL 21
QOL H20 H2 H 0 1 N N N N N N 60.923 23.569 50.039 -4.762 1.679 -0.536 H2 QOL 22
QOL H3 H3 H 0 1 N N N N N N 59.309 22.872 50.407 -4.512 1.748 1.225 H3 QOL 23
QOL H4 H4 H 0 1 N N N N N N 60.221 22.432 48.048 -3.804 -0.662 1.170 H4 QOL 24
QOL H5 H5 H 0 1 N N N N N N 61.940 20.280 49.358 -5.053 -1.220 -0.937 H5 QOL 25
QOL H6 H6 H 0 1 N N N N N N 62.604 21.904 48.973 -3.869 -0.257 -1.853 H6 QOL 26
QOL H7 H7 H 0 1 N N N N N N 62.809 20.405 47.194 -3.260 -2.565 -1.763 H7 QOL 27
QOL H8 H8 H 0 1 N N N N N N 58.445 21.068 48.508 -2.239 1.128 -0.741 H8 QOL 28
QOL H9 H9 H 0 1 N N N N N N 59.176 20.437 50.023 -2.164 1.236 1.034 H9 QOL 29
QOL H10 H10 H 0 1 N N N N N N 57.182 19.663 49.139 -0.452 1.979 0.023 H10 QOL 30
QOL H12 H12 H 0 1 N N N N N N 61.090 17.618 47.219 -0.356 -2.787 0.318 H12 QOL 31
QOL H13 H13 H 0 1 N N N N N N 61.532 15.368 46.290 1.443 -4.427 0.333 H13 QOL 32
QOL H14 H14 H 0 1 N N N N N N 59.750 13.656 46.267 3.792 -3.723 0.181 H14 QOL 33
QOL H H15 H 0 1 N N N Y Y N 56.440 14.703 47.690 5.379 -1.928 0.002 H15 QOL 34
QOL H2 H16 H 0 1 N Y N Y Y N 56.907 13.901 46.346 4.909 -0.316 -0.058 H16 QOL 35
QOL OXT O5 O 0 1 N Y N N Y Y ? ? ? 3.343 3.321 -0.218 O1 QOL 36
QOL HXT H11 H 0 1 N Y N N Y Y ? ? ? 3.543 4.265 -0.283 H11 QOL 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QOL C3 C4 DOUB Y N 1
QOL C3 CA SING Y N 2
QOL C4 C5 SING Y N 3
QOL CA N SING N N 4
QOL CA C7 DOUB Y N 5
QOL C5 C6 DOUB Y N 6
QOL OZ2 CE2 SING N N 7
QOL C7 C6 SING Y N 8
QOL C7 N11 SING Y N 9
QOL C6 C8 SING Y N 10
QOL N11 C10 DOUB Y N 11
QOL C8 OB SING N N 12
QOL C8 C9 DOUB Y N 13
QOL OB CG SING N N 14
QOL C10 C9 SING Y N 15
QOL C10 C SING N N 16
QOL CE2 CD SING N N 17
QOL CD CG SING N N 18
QOL CD CE1 SING N N 19
QOL C O DOUB N N 20
QOL CE1 OZ1 SING N N 21
QOL OZ1 H1 SING N N 22
QOL CE1 H20 SING N N 23
QOL CE1 H3 SING N N 24
QOL CD H4 SING N N 25
QOL CE2 H5 SING N N 26
QOL CE2 H6 SING N N 27
QOL OZ2 H7 SING N N 28
QOL CG H8 SING N N 29
QOL CG H9 SING N N 30
QOL C9 H10 SING N N 31
QOL C5 H12 SING N N 32
QOL C4 H13 SING N N 33
QOL C3 H14 SING N N 34
QOL N H SING N N 35
QOL N H2 SING N N 36
QOL C OXT SING N N 37
QOL OXT HXT SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QOL InChI InChI 1.06 'InChI=1S/C14H16N2O5/c15-10-3-1-2-9-12(21-7-8(5-17)6-18)4-11(14(19)20)16-13(9)10/h1-4,8,17-18H,5-7,15H2,(H,19,20)'
QOL InChIKey InChI 1.06 XJOGBGMOAHLDPT-UHFFFAOYSA-N
QOL SMILES_CANONICAL CACTVS 3.385 'Nc1cccc2c(OCC(CO)CO)cc(nc12)C(O)=O'
QOL SMILES CACTVS 3.385 'Nc1cccc2c(OCC(CO)CO)cc(nc12)C(O)=O'
QOL SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1cc2c(cc(nc2c(c1)N)C(=O)O)OCC(CO)CO'
QOL SMILES 'OpenEye OEToolkits' 2.0.7 'c1cc2c(cc(nc2c(c1)N)C(=O)O)OCC(CO)CO'
#
_pdbx_chem_comp_identifier.comp_id QOL
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier '8-azanyl-4-[2-(hydroxymethyl)-3-oxidanyl-propoxy]quinoline-2-carboxylic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QOL 'Create component' 2016-06-03 EBI
QOL 'Initial release' 2017-06-21 RCSB
QOL 'Modify backbone' 2024-09-25 PDBE
QOL 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id QOL
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 5L70
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QOL OZ1 O 6.999 5.281 1
QOL CE1 C 6.999 3.781 2
QOL CD C 8.298 3.031 3
QOL CE2 C 9.597 3.781 4
QOL OZ2 O 9.597 5.281 5
QOL CG C 8.298 1.531 6
QOL OB O 6.999 0.781 7
QOL C8 C 6.999 -0.719 8
QOL C9 C 8.298 -1.469 9
QOL C10 C 8.298 -2.969 10
QOL C C 9.597 -3.719 11
QOL O O 10.896 -2.969 12
QOL N11 N 6.999 -3.719 13
QOL C7 C 5.700 -2.969 14
QOL C6 C 5.700 -1.469 15
QOL C5 C 4.359 -0.667 16
QOL C4 C 3.000 -1.438 17
QOL C3 C 3.000 -3.001 18
QOL CA C 4.359 -3.771 19
QOL N N 4.376 -5.271 20
QOL OXT O 9.597 -5.219 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QOL C3 C4 SINGLE NONE 1
QOL C3 CA DOUBLE NONE 2
QOL C4 C5 DOUBLE NONE 3
QOL CA N SINGLE NONE 4
QOL CA C7 SINGLE NONE 5
QOL C5 C6 SINGLE NONE 6
QOL OZ2 CE2 SINGLE NONE 7
QOL C7 C6 SINGLE NONE 8
QOL C7 N11 DOUBLE NONE 9
QOL C6 C8 DOUBLE NONE 10
QOL N11 C10 SINGLE NONE 11
QOL C8 OB SINGLE NONE 12
QOL C8 C9 SINGLE NONE 13
QOL OB CG SINGLE NONE 14
QOL C10 C9 DOUBLE NONE 15
QOL C10 C SINGLE NONE 16
QOL CE2 CD SINGLE NONE 17
QOL CD CG SINGLE NONE 18
QOL CD CE1 SINGLE NONE 19
QOL C O DOUBLE NONE 20
QOL CE1 OZ1 SINGLE NONE 21
QOL C OXT SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QOL MurckoScaffold S1 scaffold c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
QOL phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
QOL pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
QOL quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QOL C8 S1 1
QOL C9 S1 1
QOL C10 S1 1
QOL N11 S1 1
QOL C7 S1 1
QOL C6 S1 1
QOL C5 S1 1
QOL C4 S1 1
QOL C3 S1 1
QOL CA S1 1
QOL C7 F1 1
QOL CA F1 1
QOL C3 F1 1
QOL C4 F1 1
QOL C5 F1 1
QOL C6 F1 1
QOL C10 F2 1
QOL C9 F2 1
QOL C8 F2 1
QOL C6 F2 1
QOL C7 F2 1
QOL N11 F2 1
QOL C4 F3 1
QOL C5 F3 1
QOL C6 F3 1
QOL C7 F3 1
QOL CA F3 1
QOL C3 F3 1
QOL N11 F3 1
QOL C10 F3 1
QOL C9 F3 1
QOL C8 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id QOL
_pdbe_chem_comp_rdkit_properties.exactmw 292.106
_pdbe_chem_comp_rdkit_properties.amw 292.291
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 143.011
_pdbe_chem_comp_rdkit_properties.tpsa 125.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.831
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.365
_pdbe_chem_comp_rdkit_properties.chi0v 9.936
_pdbe_chem_comp_rdkit_properties.chi1v 5.146
_pdbe_chem_comp_rdkit_properties.chi2v 2.165
_pdbe_chem_comp_rdkit_properties.chi3v 2.165
_pdbe_chem_comp_rdkit_properties.chi4v 1.310
_pdbe_chem_comp_rdkit_properties.chi0n 25.936
_pdbe_chem_comp_rdkit_properties.chi1n 12.765
_pdbe_chem_comp_rdkit_properties.chi2n 2.165
_pdbe_chem_comp_rdkit_properties.chi3n 2.165
_pdbe_chem_comp_rdkit_properties.chi4n 1.310
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.380
_pdbe_chem_comp_rdkit_properties.kappa1 4.556
_pdbe_chem_comp_rdkit_properties.kappa2 6.380
_pdbe_chem_comp_rdkit_properties.kappa3 3.206
_pdbe_chem_comp_rdkit_properties.Phi 1.384
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QOL OZ1 4.996 -1.307 -0.496 ETKDGv3 1
QOL CE1 3.682 -0.879 -0.737 ETKDGv3 2
QOL CD 3.408 0.471 -0.042 ETKDGv3 3
QOL CE2 3.596 0.384 1.485 ETKDGv3 4
QOL OZ2 2.742 -0.577 2.042 ETKDGv3 5
QOL CG 2.017 1.014 -0.413 ETKDGv3 6
QOL OB 0.998 0.098 -0.017 ETKDGv3 7
QOL C8 -0.375 0.306 -0.213 ETKDGv3 8
QOL C9 -0.893 1.534 -0.875 ETKDGv3 9
QOL C10 -2.217 1.697 -1.045 ETKDGv3 10
QOL C -2.764 2.900 -1.696 ETKDGv3 11
QOL O -4.010 3.022 -1.839 ETKDGv3 12
QOL N11 -3.122 0.679 -0.582 ETKDGv3 13
QOL C7 -2.702 -0.406 0.001 ETKDGv3 14
QOL C6 -1.251 -0.624 0.206 ETKDGv3 15
QOL C5 -0.824 -1.873 0.873 ETKDGv3 16
QOL C4 -1.735 -2.768 1.273 ETKDGv3 17
QOL C3 -3.185 -2.547 1.067 ETKDGv3 18
QOL CA -3.654 -1.439 0.469 ETKDGv3 19
QOL N -5.065 -1.266 0.289 ETKDGv3 20
QOL H1 5.587 -0.744 -1.061 ETKDGv3 21
QOL H20 3.512 -0.786 -1.834 ETKDGv3 22
QOL H3 2.982 -1.654 -0.359 ETKDGv3 23
QOL H4 4.153 1.205 -0.425 ETKDGv3 24
QOL H5 4.653 0.120 1.713 ETKDGv3 25
QOL H6 3.391 1.379 1.941 ETKDGv3 26
QOL H7 2.915 -0.567 3.020 ETKDGv3 27
QOL H8 1.855 1.993 0.088 ETKDGv3 28
QOL H9 1.966 1.170 -1.513 ETKDGv3 29
QOL H10 -0.203 2.293 -1.220 ETKDGv3 30
QOL H12 0.226 -2.077 1.045 ETKDGv3 31
QOL H13 -1.408 -3.678 1.760 ETKDGv3 32
QOL H14 -3.873 -3.309 1.413 ETKDGv3 33
QOL H -5.448 -0.412 -0.173 ETKDGv3 34
QOL H2 -5.742 -1.991 0.617 ETKDGv3 35
QOL OXT -1.918 3.907 -2.157 ETKDGv3 36
QOL HXT -2.292 4.735 -2.605 ETKDGv3 37
#