data_QPF
#
_chem_comp.id QPF
_chem_comp.name 1-methoxy-3,8-bis(oxidanyl)anthracene-9,10-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H10 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-10
_chem_comp.pdbx_modified_date 2023-03-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 270.237
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QPF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8BGX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QPF OAE O1 O 0 1 N N N N N N 12.538 8.192 101.564 0.577 -3.049 0.435 OAE QPF 1
QPF CAD C1 C 0 1 N N N N N N 12.245 8.835 100.557 0.543 -1.857 0.203 CAD QPF 2
QPF CAC C2 C 0 1 Y N N N N N 11.251 8.358 99.705 1.796 -1.090 0.035 CAC QPF 3
QPF CAB C3 C 0 1 Y N N N N N 10.604 7.156 100.003 3.008 -1.746 -0.144 CAB QPF 4
QPF CAA C4 C 0 1 Y N N N N N 9.612 6.662 99.164 4.175 -1.014 -0.300 CAA QPF 5
QPF CAT C5 C 0 1 Y N N N N N 9.260 7.370 98.018 4.146 0.366 -0.279 CAT QPF 6
QPF CAR C6 C 0 1 Y N N N N N 9.904 8.565 97.724 2.942 1.042 -0.101 CAR QPF 7
QPF OAS O2 O 0 1 N N N N N N 9.580 9.276 96.610 2.919 2.398 -0.080 OAS QPF 8
QPF CAQ C7 C 0 1 Y N N N N N 10.906 9.077 98.557 1.759 0.317 0.057 CAQ QPF 9
QPF CAO C8 C 0 1 N N N N N N 11.555 10.282 98.260 0.471 1.013 0.246 CAO QPF 10
QPF OAP O3 O 0 1 N N N N N N 11.246 10.913 97.246 0.446 2.198 0.517 OAP QPF 11
QPF CAN C9 C 0 1 Y N N N N N 12.556 10.765 99.112 -0.785 0.256 0.103 CAN QPF 12
QPF CAF C10 C 0 1 Y N N N N N 12.897 10.037 100.261 -0.753 -1.155 0.077 CAF QPF 13
QPF CAG C11 C 0 1 Y N N N N N 13.892 10.519 101.116 -1.935 -1.870 -0.058 CAG QPF 14
QPF CAH C12 C 0 1 Y N N N N N 14.548 11.717 100.836 -3.148 -1.192 -0.168 CAH QPF 15
QPF OAI O4 O 0 1 N N N N N N 15.519 12.189 101.670 -4.302 -1.894 -0.300 OAI QPF 16
QPF CAJ C13 C 0 1 Y N N N N N 14.214 12.440 99.696 -3.184 0.192 -0.142 CAJ QPF 17
QPF CAK C14 C 0 1 Y N N N N N 13.219 11.970 98.831 -2.009 0.924 -0.012 CAK QPF 18
QPF OAL O5 O 0 1 N N N N N N 12.816 12.615 97.683 -2.049 2.279 0.009 OAL QPF 19
QPF CAM C15 C 0 1 N N N N N N 13.361 13.898 97.317 -3.334 2.892 -0.112 CAM QPF 20
QPF H1 H1 H 0 1 N N N N N N 10.877 6.607 100.892 3.042 -2.825 -0.161 H1 QPF 21
QPF H2 H2 H 0 1 N N N N N N 9.116 5.732 99.400 5.115 -1.528 -0.438 H2 QPF 22
QPF H3 H3 H 0 1 N N N N N N 8.490 6.992 97.361 5.062 0.924 -0.402 H3 QPF 23
QPF H4 H4 H 0 1 N N N N N N 10.116 10.059 96.567 2.789 2.803 -0.948 H4 QPF 24
QPF H5 H5 H 0 1 N N N N N N 14.155 9.959 102.001 -1.914 -2.949 -0.078 H5 QPF 25
QPF H6 H6 H 0 1 N N N N N N 15.631 11.589 102.398 -4.726 -2.116 0.541 H6 QPF 26
QPF H7 H7 H 0 1 N N N N N N 14.724 13.367 99.477 -4.129 0.706 -0.228 H7 QPF 27
QPF H8 H8 H 0 1 N N N N N N 12.908 14.234 96.373 -3.788 2.600 -1.060 H8 QPF 28
QPF H9 H9 H 0 1 N N N N N N 13.141 14.629 98.109 -3.971 2.567 0.711 H9 QPF 29
QPF H10 H10 H 0 1 N N N N N N 14.450 13.811 97.190 -3.224 3.976 -0.081 H10 QPF 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QPF OAS CAR SING N N 1
QPF OAP CAO DOUB N N 2
QPF CAM OAL SING N N 3
QPF OAL CAK SING N N 4
QPF CAR CAT DOUB Y N 5
QPF CAR CAQ SING Y N 6
QPF CAT CAA SING Y N 7
QPF CAO CAQ SING N N 8
QPF CAO CAN SING N N 9
QPF CAQ CAC DOUB Y N 10
QPF CAK CAN DOUB Y N 11
QPF CAK CAJ SING Y N 12
QPF CAN CAF SING Y N 13
QPF CAA CAB DOUB Y N 14
QPF CAJ CAH DOUB Y N 15
QPF CAC CAB SING Y N 16
QPF CAC CAD SING N N 17
QPF CAF CAD SING N N 18
QPF CAF CAG DOUB Y N 19
QPF CAD OAE DOUB N N 20
QPF CAH CAG SING Y N 21
QPF CAH OAI SING N N 22
QPF CAB H1 SING N N 23
QPF CAA H2 SING N N 24
QPF CAT H3 SING N N 25
QPF OAS H4 SING N N 26
QPF CAG H5 SING N N 27
QPF OAI H6 SING N N 28
QPF CAJ H7 SING N N 29
QPF CAM H8 SING N N 30
QPF CAM H9 SING N N 31
QPF CAM H10 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QPF InChI InChI 1.06 InChI=1S/C15H10O5/c1-20-11-6-7(16)5-9-13(11)15(19)12-8(14(9)18)3-2-4-10(12)17/h2-6,16-17H,1H3
QPF InChIKey InChI 1.06 MKPXKUVNBNOJOI-UHFFFAOYSA-N
QPF SMILES_CANONICAL CACTVS 3.385 COc1cc(O)cc2C(=O)c3cccc(O)c3C(=O)c12
QPF SMILES CACTVS 3.385 COc1cc(O)cc2C(=O)c3cccc(O)c3C(=O)c12
QPF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 COc1cc(cc2c1C(=O)c3c(cccc3O)C2=O)O
QPF SMILES "OpenEye OEToolkits" 3.1.0.0 COc1cc(cc2c1C(=O)c3c(cccc3O)C2=O)O
#
_pdbx_chem_comp_identifier.comp_id QPF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier 1-methoxy-3,8-bis(oxidanyl)anthracene-9,10-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QPF 'Create component' 2022-11-10 PDBE
QPF 'Initial release' 2023-03-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QPF OAE O 6.999 -3.409 1
QPF CAD C 6.999 -1.908 2
QPF CAC C 5.700 -1.158 3
QPF CAB C 4.359 -1.960 4
QPF CAA C 3.000 -1.190 5
QPF CAT C 3.000 0.373 6
QPF CAR C 4.359 1.144 7
QPF OAS O 4.376 2.643 8
QPF CAQ C 5.700 0.342 9
QPF CAO C 6.999 1.092 10
QPF OAP O 6.999 2.591 11
QPF CAN C 8.298 0.342 12
QPF CAF C 8.298 -1.158 13
QPF CAG C 9.639 -1.960 14
QPF CAH C 10.998 -1.190 15
QPF OAI O 12.294 -1.945 16
QPF CAJ C 10.998 0.373 17
QPF CAK C 9.639 1.144 18
QPF OAL O 9.622 2.643 19
QPF CAM C 10.912 3.409 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QPF OAS CAR SINGLE NONE 1
QPF OAP CAO DOUBLE NONE 2
QPF CAM OAL SINGLE NONE 3
QPF OAL CAK SINGLE NONE 4
QPF CAR CAT SINGLE NONE 5
QPF CAR CAQ DOUBLE NONE 6
QPF CAT CAA DOUBLE NONE 7
QPF CAO CAQ SINGLE NONE 8
QPF CAO CAN SINGLE NONE 9
QPF CAQ CAC SINGLE NONE 10
QPF CAK CAN SINGLE NONE 11
QPF CAK CAJ DOUBLE NONE 12
QPF CAN CAF DOUBLE NONE 13
QPF CAA CAB SINGLE NONE 14
QPF CAJ CAH SINGLE NONE 15
QPF CAC CAB DOUBLE NONE 16
QPF CAC CAD SINGLE NONE 17
QPF CAF CAD SINGLE NONE 18
QPF CAF CAG SINGLE NONE 19
QPF CAD OAE DOUBLE NONE 20
QPF CAH CAG DOUBLE NONE 21
QPF CAH OAI SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QPF MurckoScaffold S1 scaffold O=C1c2ccccc2C(=O)c2ccccc21 InChI=1S/C14H8O2/c15-13-9-5-1-2-6-10(9)14(16)12-8-4-3-7-11(12)13/h1-8H RZVHIXYEVGDQDX-UHFFFAOYSA-N
QPF phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QPF OAE S1 1
QPF CAD S1 1
QPF CAC S1 1
QPF CAB S1 1
QPF CAA S1 1
QPF CAT S1 1
QPF CAR S1 1
QPF CAQ S1 1
QPF CAO S1 1
QPF OAP S1 1
QPF CAN S1 1
QPF CAF S1 1
QPF CAG S1 1
QPF CAH S1 1
QPF CAJ S1 1
QPF CAK S1 1
QPF CAC F1 1
QPF CAQ F1 1
QPF CAR F1 1
QPF CAT F1 1
QPF CAA F1 1
QPF CAB F1 1
QPF CAN F1 2
QPF CAK F1 2
QPF CAJ F1 2
QPF CAH F1 2
QPF CAG F1 2
QPF CAF F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id QPF
_pdbe_chem_comp_rdkit_properties.exactmw 270.053
_pdbe_chem_comp_rdkit_properties.amw 270.240
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.067
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 127.826
_pdbe_chem_comp_rdkit_properties.tpsa 83.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.276
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.737
_pdbe_chem_comp_rdkit_properties.chi0v 9.541
_pdbe_chem_comp_rdkit_properties.chi1v 5.225
_pdbe_chem_comp_rdkit_properties.chi2v 2.794
_pdbe_chem_comp_rdkit_properties.chi3v 2.794
_pdbe_chem_comp_rdkit_properties.chi4v 1.976
_pdbe_chem_comp_rdkit_properties.chi0n 19.541
_pdbe_chem_comp_rdkit_properties.chi1n 10.041
_pdbe_chem_comp_rdkit_properties.chi2n 2.794
_pdbe_chem_comp_rdkit_properties.chi3n 2.794
_pdbe_chem_comp_rdkit_properties.chi4n 1.976
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.820
_pdbe_chem_comp_rdkit_properties.kappa1 5.282
_pdbe_chem_comp_rdkit_properties.kappa2 4.093
_pdbe_chem_comp_rdkit_properties.kappa3 1.495
_pdbe_chem_comp_rdkit_properties.Phi 1.081
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
QPF UniChem PDBe QPF
QPF UniChem PubChem 71323793
QPF UniChem NMRShiftDB 80015650
QPF UniChem 'EPA CompTox Dashboard' DTXSID60753343
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QPF OAE 0.899 3.094 0.735 ETKDGv3 1
QPF CAD 0.821 1.869 0.443 ETKDGv3 2
QPF CAC 2.051 1.075 0.244 ETKDGv3 3
QPF CAB 3.267 1.650 0.286 ETKDGv3 4
QPF CAA 4.477 0.850 0.033 ETKDGv3 5
QPF CAT 4.370 -0.445 -0.272 ETKDGv3 6
QPF CAR 3.044 -1.095 -0.343 ETKDGv3 7
QPF OAS 3.012 -2.429 -0.757 ETKDGv3 8
QPF CAQ 1.927 -0.382 -0.036 ETKDGv3 9
QPF CAO 0.571 -0.978 0.093 ETKDGv3 10
QPF OAP 0.440 -2.214 0.299 ETKDGv3 11
QPF CAN -0.635 -0.104 0.098 ETKDGv3 12
QPF CAF -0.510 1.235 0.281 ETKDGv3 13
QPF CAG -1.726 2.086 0.331 ETKDGv3 14
QPF CAH -2.942 1.548 0.193 ETKDGv3 15
QPF OAI -4.086 2.343 0.243 ETKDGv3 16
QPF CAJ -3.083 0.098 -0.020 ETKDGv3 17
QPF CAK -1.998 -0.700 -0.074 ETKDGv3 18
QPF OAL -2.114 -2.083 -0.302 ETKDGv3 19
QPF CAM -3.340 -2.785 -0.486 ETKDGv3 20
QPF H1 3.381 2.708 0.488 ETKDGv3 21
QPF H2 5.451 1.319 0.077 ETKDGv3 22
QPF H3 5.262 -1.023 -0.477 ETKDGv3 23
QPF H4 2.181 -2.897 -1.090 ETKDGv3 24
QPF H5 -1.632 3.154 0.482 ETKDGv3 25
QPF H6 -4.034 3.345 0.386 ETKDGv3 26
QPF H7 -4.081 -0.301 -0.139 ETKDGv3 27
QPF H8 -3.979 -2.681 0.417 ETKDGv3 28
QPF H9 -3.121 -3.861 -0.643 ETKDGv3 29
QPF H10 -3.872 -2.397 -1.380 ETKDGv3 30
#