data_QUK
#
_chem_comp.id QUK
_chem_comp.name "8-azanyl-4-(3-azanylpropoxy)quinoline-2-carboxylic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C13 H15 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-05-24
_chem_comp.pdbx_modified_date 2024-05-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 261.276
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code QUK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5L3O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QUK O O1 O 0 1 N N N Y N Y -41.387 -0.365 -25.403 0.295 -3.740 -0.003 O QUK 1
QUK C C1 C 0 1 N N N Y N Y -40.437 0.348 -25.102 1.254 -2.995 -0.002 C QUK 2
QUK C10 C2 C 0 1 Y N N Y N N -40.613 1.393 -24.171 1.053 -1.528 0.001 C10 QUK 3
QUK N11 N1 N 0 1 Y N N Y N N -39.515 1.992 -23.648 2.106 -0.732 -0.004 N11 QUK 4
QUK C7 C3 C 0 1 Y N N Y N N -39.550 3.043 -22.799 1.980 0.593 -0.002 C7 QUK 5
QUK CA C4 C 0 1 Y N N Y N N -38.341 3.598 -22.337 3.121 1.431 -0.007 C2 QUK 6
QUK N N2 N 0 1 N N N Y Y N -37.181 2.979 -22.747 4.399 0.877 -0.016 N QUK 7
QUK C9 C5 C 0 1 Y N N N N N -41.879 1.908 -23.826 -0.251 -1.017 0.004 C9 QUK 8
QUK C8 C6 C 0 1 Y N N N N N -41.975 2.990 -22.941 -0.448 0.351 0.007 C8 QUK 9
QUK C6 C7 C 0 1 Y N N N N N -40.798 3.564 -22.433 0.693 1.186 0.007 C6 QUK 10
QUK C5 C8 C 0 1 Y N N N N N -40.831 4.651 -21.566 0.569 2.583 0.011 C5 QUK 11
QUK C4 C9 C 0 1 Y N N N N N -39.645 5.183 -21.060 1.685 3.365 0.006 C4 QUK 12
QUK C3 C10 C 0 1 Y N N N N N -38.411 4.660 -21.420 2.957 2.799 -0.003 C3 QUK 13
QUK OB O2 O 0 1 N N N N N N -43.180 3.525 -22.548 -1.698 0.877 0.010 OB QUK 14
QUK CG C11 C 0 1 N N N N N N -44.487 2.978 -22.779 -2.790 -0.045 0.009 CG QUK 15
QUK CD C12 C 0 1 N N N N N N -45.519 3.989 -22.251 -4.110 0.728 0.012 CD QUK 16
QUK CE C13 C 0 1 N N N N N N -46.916 3.785 -22.833 -5.279 -0.260 0.011 CE QUK 17
QUK OXT O3 O 0 1 N Y N Y N Y -39.213 0.233 -25.649 2.501 -3.504 0.000 OXT QUK 18
QUK H H1 H 0 1 N N N Y Y N -36.393 3.457 -22.360 4.510 -0.086 -0.019 H1 QUK 19
QUK H2 H2 H 0 1 N Y N Y Y N -37.182 2.029 -22.434 5.178 1.455 -0.020 H2 QUK 20
QUK H3 H3 H 0 1 N N N N N N -42.773 1.469 -24.243 -1.098 -1.688 0.003 H3 QUK 21
QUK H4 H4 H 0 1 N N N N N N -41.779 5.085 -21.283 -0.410 3.039 0.018 H4 QUK 22
QUK H5 H5 H 0 1 N N N N N N -39.688 6.017 -20.375 1.582 4.440 0.009 H5 QUK 23
QUK H6 H6 H 0 1 N N N N N N -37.506 5.069 -20.996 3.826 3.440 -0.007 H6 QUK 24
QUK H7 H7 H 0 1 N N N N N N -44.640 2.815 -23.856 -2.737 -0.670 -0.882 H7 QUK 25
QUK H8 H8 H 0 1 N N N N N N -44.592 2.022 -22.245 -2.735 -0.674 0.898 H8 QUK 26
QUK H9 H9 H 0 1 N N N N N N -45.178 5.003 -22.508 -4.163 1.352 0.904 H9 QUK 27
QUK H10 H10 H 0 1 N N N N N N -45.578 3.889 -21.157 -4.165 1.356 -0.876 H10 QUK 28
QUK H11 H11 H 0 1 N N N N N N -47.857 4.008 -22.309 -5.226 -0.885 -0.880 H11 QUK 29
QUK H12 H12 H 0 1 N N N N N N -47.132 3.523 -23.879 -5.224 -0.889 0.900 H12 QUK 30
QUK HXT H14 H 0 1 N Y N Y N Y -39.215 -0.472 -26.286 2.582 -4.467 0.002 H14 QUK 31
QUK N1 N3 N 0 1 N N N N N N ? ? ? -6.547 0.482 0.014 N1 QUK 32
QUK H13 H13 H 0 1 N N N N N N ? ? ? -6.594 1.121 -0.765 H13 QUK 33
QUK H15 H15 H 0 1 N N N N N N ? ? ? -7.335 -0.148 0.014 H15 QUK 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QUK O C DOUB N N 1
QUK C C10 SING N N 2
QUK C10 C9 DOUB Y N 3
QUK C10 N11 SING Y N 4
QUK C9 C8 SING Y N 5
QUK N11 C7 DOUB Y N 6
QUK C8 OB SING N N 7
QUK C8 C6 DOUB Y N 8
QUK CE CD SING N N 9
QUK C7 C6 SING Y N 10
QUK C7 CA SING Y N 11
QUK CG OB SING N N 12
QUK CG CD SING N N 13
QUK N CA SING N N 14
QUK C6 C5 SING Y N 15
QUK CA C3 DOUB Y N 16
QUK C5 C4 DOUB Y N 17
QUK C3 C4 SING Y N 18
QUK C OXT SING N N 19
QUK N H SING N N 20
QUK N H2 SING N N 21
QUK C9 H3 SING N N 22
QUK C5 H4 SING N N 23
QUK C4 H5 SING N N 24
QUK C3 H6 SING N N 25
QUK CG H7 SING N N 26
QUK CG H8 SING N N 27
QUK CD H9 SING N N 28
QUK CD H10 SING N N 29
QUK CE H11 SING N N 30
QUK CE H12 SING N N 31
QUK OXT HXT SING N N 32
QUK CE N1 SING N N 33
QUK N1 H13 SING N N 34
QUK N1 H15 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QUK InChI InChI 1.03 "InChI=1S/C13H15N3O3/c14-5-2-6-19-11-7-10(13(17)18)16-12-8(11)3-1-4-9(12)15/h1,3-4,7H,2,5-6,14-15H2,(H,17,18)"
QUK InChIKey InChI 1.03 QGMHWPPZJKLYHR-UHFFFAOYSA-N
QUK SMILES_CANONICAL CACTVS 3.385 "NCCCOc1cc(nc2c(N)cccc12)C(O)=O"
QUK SMILES CACTVS 3.385 "NCCCOc1cc(nc2c(N)cccc12)C(O)=O"
QUK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc2c(cc(nc2c(c1)N)C(=O)O)OCCCN"
QUK SMILES "OpenEye OEToolkits" 2.0.5 "c1cc2c(cc(nc2c(c1)N)C(=O)O)OCCCN"
#
_pdbx_chem_comp_identifier.comp_id QUK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "8-azanyl-4-(3-azanylpropoxy)quinoline-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QUK 'Create component' 2016-05-24 RCSB
QUK 'Other modification' 2016-05-24 RCSB
QUK 'Other modification' 2016-06-02 RCSB
QUK 'Initial release' 2017-03-01 RCSB
QUK 'Modify linking type' 2024-05-09 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
QUK O O 10.896 -2.969 1
QUK C C 9.597 -3.719 2
QUK C10 C 8.298 -2.969 3
QUK N11 N 6.999 -3.719 4
QUK C7 C 5.700 -2.969 5
QUK CA C 4.359 -3.771 6
QUK N N 4.376 -5.271 7
QUK C9 C 8.298 -1.469 8
QUK C8 C 6.999 -0.719 9
QUK C6 C 5.700 -1.469 10
QUK C5 C 4.359 -0.667 11
QUK C4 C 3.000 -1.438 12
QUK C3 C 3.000 -3.001 13
QUK OB O 6.999 0.781 14
QUK CG C 8.298 1.531 15
QUK CD C 8.298 3.031 16
QUK CE C 9.597 3.781 17
QUK OXT O 9.597 -5.219 18
QUK N1 N 9.597 5.281 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
QUK O C DOUBLE NONE 1
QUK C C10 SINGLE NONE 2
QUK C10 C9 DOUBLE NONE 3
QUK C10 N11 SINGLE NONE 4
QUK C9 C8 SINGLE NONE 5
QUK N11 C7 DOUBLE NONE 6
QUK C8 OB SINGLE NONE 7
QUK C8 C6 DOUBLE NONE 8
QUK CE CD SINGLE NONE 9
QUK C7 C6 SINGLE NONE 10
QUK C7 CA SINGLE NONE 11
QUK CG OB SINGLE NONE 12
QUK CG CD SINGLE NONE 13
QUK N CA SINGLE NONE 14
QUK C6 C5 SINGLE NONE 15
QUK CA C3 DOUBLE NONE 16
QUK C5 C4 DOUBLE NONE 17
QUK C3 C4 SINGLE NONE 18
QUK C OXT SINGLE NONE 19
QUK CE N1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
QUK MurckoScaffold S1 scaffold c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
QUK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
QUK pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
QUK quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
QUK C10 S1 1
QUK N11 S1 1
QUK C7 S1 1
QUK CA S1 1
QUK C9 S1 1
QUK C8 S1 1
QUK C6 S1 1
QUK C5 S1 1
QUK C4 S1 1
QUK C3 S1 1
QUK C7 F1 1
QUK C6 F1 1
QUK C5 F1 1
QUK C4 F1 1
QUK C3 F1 1
QUK CA F1 1
QUK C10 F2 1
QUK C9 F2 1
QUK C8 F2 1
QUK C6 F2 1
QUK C7 F2 1
QUK N11 F2 1
QUK C4 F3 1
QUK C5 F3 1
QUK C6 F3 1
QUK C7 F3 1
QUK CA F3 1
QUK C3 F3 1
QUK N11 F3 1
QUK C10 F3 1
QUK C9 F3 1
QUK C8 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id QUK
_pdbe_chem_comp_rdkit_properties.exactmw 261.111
_pdbe_chem_comp_rdkit_properties.amw 261.281
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.935
_pdbe_chem_comp_rdkit_properties.tpsa 111.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.083
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.375
_pdbe_chem_comp_rdkit_properties.chi0v 9.066
_pdbe_chem_comp_rdkit_properties.chi1v 4.711
_pdbe_chem_comp_rdkit_properties.chi2v 1.965
_pdbe_chem_comp_rdkit_properties.chi3v 1.965
_pdbe_chem_comp_rdkit_properties.chi4v 1.245
_pdbe_chem_comp_rdkit_properties.chi0n 24.066
_pdbe_chem_comp_rdkit_properties.chi1n 11.908
_pdbe_chem_comp_rdkit_properties.chi2n 1.965
_pdbe_chem_comp_rdkit_properties.chi3n 1.965
_pdbe_chem_comp_rdkit_properties.chi4n 1.245
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.340
_pdbe_chem_comp_rdkit_properties.kappa1 3.830
_pdbe_chem_comp_rdkit_properties.kappa2 5.534
_pdbe_chem_comp_rdkit_properties.kappa3 2.739
_pdbe_chem_comp_rdkit_properties.Phi 1.116
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
QUK UniChem PDBe QUK
QUK UniChem ZINC ZINC000584905661
QUK UniChem PubChem 102322894
QUK UniChem Nikkaji J2.487.294G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
QUK O -2.645 2.069 3.041 ETKDGv3 1
QUK C -1.521 2.067 2.472 ETKDGv3 2
QUK C10 -1.318 1.258 1.258 ETKDGv3 3
QUK N11 -2.412 0.477 0.743 ETKDGv3 4
QUK C7 -2.296 -0.254 -0.329 ETKDGv3 5
QUK CA -3.436 -1.046 -0.842 ETKDGv3 6
QUK N -4.694 -1.041 -0.156 ETKDGv3 7
QUK C9 -0.133 1.235 0.624 ETKDGv3 8
QUK C8 0.040 0.403 -0.585 ETKDGv3 9
QUK C6 -1.005 -0.302 -1.058 ETKDGv3 10
QUK C5 -0.935 -1.114 -2.291 ETKDGv3 11
QUK C4 -2.005 -1.801 -2.706 ETKDGv3 12
QUK C3 -3.285 -1.772 -1.962 ETKDGv3 13
QUK OB 1.284 0.379 -1.222 ETKDGv3 14
QUK CG 2.209 -0.693 -1.041 ETKDGv3 15
QUK CD 2.892 -0.609 0.328 ETKDGv3 16
QUK CE 3.753 0.651 0.457 ETKDGv3 17
QUK OXT -0.483 2.832 2.999 ETKDGv3 18
QUK H -4.830 -0.484 0.716 ETKDGv3 19
QUK H2 -5.503 -1.597 -0.513 ETKDGv3 20
QUK H3 0.707 1.813 0.989 ETKDGv3 21
QUK H4 -0.024 -1.154 -2.875 ETKDGv3 22
QUK H5 -1.939 -2.391 -3.612 ETKDGv3 23
QUK H6 -4.114 -2.354 -2.346 ETKDGv3 24
QUK H7 1.685 -1.669 -1.132 ETKDGv3 25
QUK H8 2.976 -0.646 -1.843 ETKDGv3 26
QUK H9 3.538 -1.505 0.457 ETKDGv3 27
QUK H10 2.124 -0.624 1.130 ETKDGv3 28
QUK H11 3.119 1.553 0.312 ETKDGv3 29
QUK H12 4.547 0.651 -0.324 ETKDGv3 30
QUK HXT -0.620 3.390 3.834 ETKDGv3 31
QUK N1 4.364 0.708 1.781 ETKDGv3 32
QUK H13 5.086 -0.046 1.841 ETKDGv3 33
QUK H15 4.877 1.617 1.856 ETKDGv3 34
#