data_R0D
#
_chem_comp.id R0D
_chem_comp.name "(5-chloro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]methanone"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H19 Cl N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-01-21
_chem_comp.pdbx_modified_date 2020-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.840
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R0D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6UZ8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R0D C10 C1 C 0 1 N N N N N N 172.694 145.541 130.938 -0.178 0.979 0.663 C10 R0D 1
R0D C13 C2 C 0 1 N N R N N N 172.388 147.882 132.897 -2.705 0.078 -0.297 C13 R0D 2
R0D C17 C3 C 0 1 Y N N N N N 173.473 148.404 136.829 -6.261 -0.531 1.695 C17 R0D 3
R0D C20 C4 C 0 1 Y N N N N N 172.322 145.984 135.991 -5.962 -1.434 -0.905 C20 R0D 4
R0D C21 C5 C 0 1 Y N N N N N 172.358 147.069 135.110 -4.962 -0.670 -0.321 C21 R0D 5
R0D C24 C6 C 0 1 N N N N N N 171.141 146.576 129.365 0.489 1.704 -1.667 C24 R0D 6
R0D C26 C7 C 0 1 Y N N N N N 170.195 142.799 129.663 3.551 0.240 0.131 C26 R0D 7
R0D C02 C8 C 0 1 Y N N N N N 168.461 141.362 130.424 5.346 -1.335 0.155 C02 R0D 8
R0D C03 C9 C 0 1 Y N N N N N 168.673 140.450 129.414 6.185 -0.372 0.688 C03 R0D 9
R0D C04 C10 C 0 1 Y N N N N N 169.675 140.700 128.484 5.717 0.899 0.947 C04 R0D 10
R0D C05 C11 C 0 1 Y N N N N N 170.422 141.870 128.618 4.385 1.225 0.670 C05 R0D 11
R0D C07 C12 C 0 1 N N N N N N 172.090 143.501 128.401 2.458 2.320 0.461 C07 R0D 12
R0D C08 C13 C 0 1 N N N N N N 171.149 143.973 129.554 2.215 0.916 -0.042 C08 R0D 13
R0D C09 C14 C 0 1 N N N N N N 171.943 144.193 130.844 1.149 0.225 0.801 C09 R0D 14
R0D C12 C15 C 0 1 N N N N N N 171.649 147.797 131.539 -1.696 0.687 -1.236 C12 R0D 15
R0D C14 C16 C 0 1 N N N N N N 172.220 149.275 133.537 -3.174 1.133 0.714 C14 R0D 16
R0D C16 C17 C 0 1 Y N N N N N 172.936 148.259 135.556 -5.112 -0.218 0.984 C16 R0D 17
R0D C18 C18 C 0 1 Y N N N N N 173.433 147.320 137.691 -7.254 -1.292 1.107 C18 R0D 18
R0D C19 C19 C 0 1 Y N N N N N 172.859 146.120 137.270 -7.104 -1.743 -0.192 C19 R0D 19
R0D C25 C20 C 0 1 N N N N N N 170.380 145.246 129.223 1.810 0.942 -1.516 C25 R0D 20
R0D C27 C21 C 0 1 Y N N N N N 169.198 142.536 130.573 4.023 -1.023 -0.123 C27 R0D 21
R0D N06 N1 N 0 1 N N N N N N 171.451 142.313 127.822 3.688 2.390 0.833 N06 R0D 22
R0D N11 N2 N 0 1 N N N N N N 171.817 146.711 130.661 -0.505 1.108 -0.764 N11 R0D 23
R0D O15 O1 O 0 1 N N N N N N 173.000 149.354 134.728 -4.140 0.526 1.579 O15 R0D 24
R0D O22 O2 O 0 1 N N N N N N 171.830 146.946 133.835 -3.846 -0.369 -1.039 O22 R0D 25
R0D O23 O3 O 0 1 N N N N N N 170.903 148.704 131.215 -1.954 0.798 -2.415 O23 R0D 26
R0D CL01 CL1 CL 0 0 N N N N N N 167.212 141.021 131.560 5.948 -2.931 -0.166 CL01 R0D 27
R0D H1 H1 H 0 1 N N N N N N 173.516 145.537 130.207 -0.968 0.425 1.170 H1 R0D 28
R0D H2 H2 H 0 1 N N N N N N 173.106 145.643 131.953 -0.084 1.970 1.107 H2 R0D 29
R0D H3 H3 H 0 1 N N N N N N 173.458 147.683 132.739 -2.257 -0.764 0.230 H3 R0D 30
R0D H4 H4 H 0 1 N N N N N N 173.912 149.341 137.140 -6.381 -0.180 2.709 H4 R0D 31
R0D H5 H5 H 0 1 N N N N N N 171.881 145.047 135.683 -5.847 -1.788 -1.919 H5 R0D 32
R0D H6 H6 H 0 1 N N N N N N 171.896 146.635 128.567 0.639 2.751 -1.406 H6 R0D 33
R0D H7 H7 H 0 1 N N N N N N 170.425 147.404 129.255 0.138 1.630 -2.697 H7 R0D 34
R0D H8 H8 H 0 1 N N N N N N 168.071 139.556 129.346 7.215 -0.618 0.903 H8 R0D 35
R0D H9 H9 H 0 1 N N N N N N 169.870 140.007 127.679 6.379 1.643 1.363 H9 R0D 36
R0D H10 H10 H 0 1 N N N N N N 173.020 143.955 128.093 1.733 3.119 0.501 H10 R0D 37
R0D H11 H11 H 0 1 N N N N N N 171.241 144.136 131.689 1.458 0.221 1.846 H11 R0D 38
R0D H12 H12 H 0 1 N N N N N N 172.684 143.385 130.928 1.021 -0.801 0.456 H12 R0D 39
R0D H13 H13 H 0 1 N N N N N N 172.556 150.046 132.828 -2.324 1.483 1.301 H13 R0D 40
R0D H14 H14 H 0 1 N N N N N N 171.160 149.439 133.782 -3.628 1.972 0.187 H14 R0D 41
R0D H15 H15 H 0 1 N N N N N N 173.845 147.404 138.686 -8.148 -1.534 1.662 H15 R0D 42
R0D H16 H16 H 0 1 N N N N N N 172.830 145.280 137.948 -7.881 -2.338 -0.648 H16 R0D 43
R0D H17 H17 H 0 1 N N N N N N 169.507 145.290 129.891 1.685 -0.079 -1.877 H17 R0D 44
R0D H18 H18 H 0 1 N N N N N N 170.040 145.167 128.180 2.586 1.441 -2.097 H18 R0D 45
R0D H19 H19 H 0 1 N N N N N N 168.991 143.221 131.382 3.366 -1.772 -0.538 H19 R0D 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R0D N06 C07 DOUB N N 1
R0D N06 C05 SING N N 2
R0D C07 C08 SING N N 3
R0D C04 C05 DOUB Y N 4
R0D C04 C03 SING Y N 5
R0D C05 C26 SING Y N 6
R0D C25 C24 SING N N 7
R0D C25 C08 SING N N 8
R0D C24 N11 SING N N 9
R0D C03 C02 DOUB Y N 10
R0D C08 C26 SING N N 11
R0D C08 C09 SING N N 12
R0D C26 C27 DOUB Y N 13
R0D C02 C27 SING Y N 14
R0D C02 CL01 SING N N 15
R0D N11 C10 SING N N 16
R0D N11 C12 SING N N 17
R0D C09 C10 SING N N 18
R0D O23 C12 DOUB N N 19
R0D C12 C13 SING N N 20
R0D C13 C14 SING N N 21
R0D C13 O22 SING N N 22
R0D C14 O15 SING N N 23
R0D O22 C21 SING N N 24
R0D O15 C16 SING N N 25
R0D C21 C16 DOUB Y N 26
R0D C21 C20 SING Y N 27
R0D C16 C17 SING Y N 28
R0D C20 C19 DOUB Y N 29
R0D C17 C18 DOUB Y N 30
R0D C19 C18 SING Y N 31
R0D C10 H1 SING N N 32
R0D C10 H2 SING N N 33
R0D C13 H3 SING N N 34
R0D C17 H4 SING N N 35
R0D C20 H5 SING N N 36
R0D C24 H6 SING N N 37
R0D C24 H7 SING N N 38
R0D C03 H8 SING N N 39
R0D C04 H9 SING N N 40
R0D C07 H10 SING N N 41
R0D C09 H11 SING N N 42
R0D C09 H12 SING N N 43
R0D C14 H13 SING N N 44
R0D C14 H14 SING N N 45
R0D C18 H15 SING N N 46
R0D C19 H16 SING N N 47
R0D C25 H17 SING N N 48
R0D C25 H18 SING N N 49
R0D C27 H19 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R0D SMILES ACDLabs 12.01 C3CC2(c1cc(Cl)ccc1N=C2)CCN3C(C5COc4ccccc4O5)=O
R0D InChI InChI 1.03 InChI=1S/C21H19ClN2O3/c22-14-5-6-16-15(11-14)21(13-23-16)7-9-24(10-8-21)20(25)19-12-26-17-3-1-2-4-18(17)27-19/h1-6,11,13,19H,7-10,12H2/t19-/m1/s1
R0D InChIKey InChI 1.03 FORRKPPZDDUANL-LJQANCHMSA-N
R0D SMILES_CANONICAL CACTVS 3.385 Clc1ccc2N=CC3(CCN(CC3)C(=O)[C@H]4COc5ccccc5O4)c2c1
R0D SMILES CACTVS 3.385 Clc1ccc2N=CC3(CCN(CC3)C(=O)[CH]4COc5ccccc5O4)c2c1
R0D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)OC[C@@H](O2)C(=O)N3CCC4(CC3)C=Nc5c4cc(cc5)Cl
R0D SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)OCC(O2)C(=O)N3CCC4(CC3)C=Nc5c4cc(cc5)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R0D "SYSTEMATIC NAME" ACDLabs 12.01 "(5-chloro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]methanone"
R0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5-chloranylspiro[indole-3,4'-piperidine]-1'-yl)-[(3~{R})-2,3-dihydro-1,4-benzodioxin-3-yl]methanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R0D 'Create component' 2020-01-21 RCSB
R0D 'Initial release' 2020-03-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R0D C10 C 9.556 0.934 1
R0D C13 C 9.556 -2.066 2
R0D C17 C 13.519 -4.326 3
R0D C20 C 10.831 -5.878 4
R0D C21 C 10.855 -4.316 5
R0D C24 C 6.958 0.934 6
R0D C26 C 7.044 4.066 7
R0D C02 C 4.466 4.871 8
R0D C03 C 4.949 6.357 9
R0D C04 C 6.479 6.670 10
R0D C05 C 7.507 5.493 11
R0D C07 C 9.470 4.066 12
R0D C08 C 8.257 3.184 13
R0D C09 C 9.556 2.434 14
R0D C12 C 8.257 -1.316 15
R0D C14 C 10.855 -1.316 16
R0D C16 C 12.154 -3.566 17
R0D C18 C 13.531 -5.888 18
R0D C19 C 12.178 -6.670 19
R0D C25 C 6.958 2.434 20
R0D C27 C 5.521 3.718 21
R0D N06 N 9.007 5.493 22
R0D N11 N 8.257 0.184 23
R0D O15 O 12.154 -2.066 24
R0D O22 O 9.556 -3.566 25
R0D O23 O 6.958 -2.066 26
R0D CL01 Cl 3.000 4.553 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R0D N06 C07 DOUBLE NONE 1
R0D N06 C05 SINGLE NONE 2
R0D C07 C08 SINGLE NONE 3
R0D C04 C05 DOUBLE NONE 4
R0D C04 C03 SINGLE NONE 5
R0D C05 C26 SINGLE NONE 6
R0D C25 C24 SINGLE NONE 7
R0D C25 C08 SINGLE NONE 8
R0D C24 N11 SINGLE NONE 9
R0D C03 C02 DOUBLE NONE 10
R0D C08 C26 SINGLE NONE 11
R0D C08 C09 SINGLE NONE 12
R0D C26 C27 DOUBLE NONE 13
R0D C02 C27 SINGLE NONE 14
R0D C02 CL01 SINGLE NONE 15
R0D N11 C10 SINGLE NONE 16
R0D N11 C12 SINGLE NONE 17
R0D C09 C10 SINGLE NONE 18
R0D O23 C12 DOUBLE NONE 19
R0D C13 C12 SINGLE BEGINWEDGE 20
R0D C13 C14 SINGLE NONE 21
R0D C13 O22 SINGLE NONE 22
R0D C14 O15 SINGLE NONE 23
R0D O22 C21 SINGLE NONE 24
R0D O15 C16 SINGLE NONE 25
R0D C21 C16 SINGLE NONE 26
R0D C21 C20 DOUBLE NONE 27
R0D C16 C17 DOUBLE NONE 28
R0D C20 C19 SINGLE NONE 29
R0D C17 C18 SINGLE NONE 30
R0D C19 C18 DOUBLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R0D MurckoScaffold S1 scaffold 'O=C([C@H]1COc2ccccc2O1)N1CCC2(C=Nc3ccccc32)CC1' InChI=1S/C21H20N2O3/c24-20(19-13-25-17-7-3-4-8-18(17)26-19)23-11-9-21(10-12-23)14-22-16-6-2-1-5-15(16)21/h1-8,14,19H,9-13H2/t19-/m1/s1 AKTCYDYEJMDGOL-LJQANCHMSA-N
R0D amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R0D phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R0D Z278104818 F3 fragment Cl.c1ccc(C2CCNCC2)cc1 'InChI=1S/C11H15N.ClH/c1-2-4-10(5-3-1)11-6-8-12-9-7-11;/h1-5,11-12H,6-9H2;1H' UPZJLQCUYUTZIE-UHFFFAOYSA-N
R0D Z1891773476 F4 fragment CNCC1COc2ccccc2O1 InChI=1S/C10H13NO2/c1-11-6-8-7-12-9-4-2-3-5-10(9)13-8/h2-5,8,11H,6-7H2,1H3 RPZMFKMYOVWSQN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R0D C10 S1 1
R0D C13 S1 1
R0D C17 S1 1
R0D C20 S1 1
R0D C21 S1 1
R0D C24 S1 1
R0D C26 S1 1
R0D C02 S1 1
R0D C03 S1 1
R0D C04 S1 1
R0D C05 S1 1
R0D C07 S1 1
R0D C08 S1 1
R0D C09 S1 1
R0D C12 S1 1
R0D C14 S1 1
R0D C16 S1 1
R0D C18 S1 1
R0D C19 S1 1
R0D C25 S1 1
R0D C27 S1 1
R0D N06 S1 1
R0D N11 S1 1
R0D O15 S1 1
R0D O22 S1 1
R0D O23 S1 1
R0D N11 F1 1
R0D C12 F1 1
R0D O23 F1 1
R0D C13 F1 1
R0D C17 F2 1
R0D C16 F2 1
R0D C21 F2 1
R0D C20 F2 1
R0D C19 F2 1
R0D C18 F2 1
R0D C26 F2 2
R0D C05 F2 2
R0D C04 F2 2
R0D C03 F2 2
R0D C02 F2 2
R0D C27 F2 2
R0D CL01 F3 1
R0D C10 F3 1
R0D C09 F3 1
R0D C08 F3 1
R0D C25 F3 1
R0D C24 F3 1
R0D N11 F3 1
R0D C26 F3 1
R0D C05 F3 1
R0D C04 F3 1
R0D C03 F3 1
R0D C02 F3 1
R0D C27 F3 1
R0D C10 F4 1
R0D N11 F4 1
R0D C12 F4 1
R0D C13 F4 1
R0D C14 F4 1
R0D O15 F4 1
R0D C16 F4 1
R0D C17 F4 1
R0D C18 F4 1
R0D C19 F4 1
R0D C20 F4 1
R0D C21 F4 1
R0D O22 F4 1
R0D C24 F4 2
R0D N11 F4 2
R0D C12 F4 2
R0D C13 F4 2
R0D C14 F4 2
R0D O15 F4 2
R0D C16 F4 2
R0D C17 F4 2
R0D C18 F4 2
R0D C19 F4 2
R0D C20 F4 2
R0D C21 F4 2
R0D O22 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id R0D
_pdbe_chem_comp_rdkit_properties.exactmw 382.108
_pdbe_chem_comp_rdkit_properties.amw 382.847
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 188.797
_pdbe_chem_comp_rdkit_properties.tpsa 51.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.396
_pdbe_chem_comp_rdkit_properties.CrippenMR 101.139
_pdbe_chem_comp_rdkit_properties.chi0v 13.753
_pdbe_chem_comp_rdkit_properties.chi1v 7.706
_pdbe_chem_comp_rdkit_properties.chi2v 3.840
_pdbe_chem_comp_rdkit_properties.chi3v 3.840
_pdbe_chem_comp_rdkit_properties.chi4v 2.533
_pdbe_chem_comp_rdkit_properties.chi0n 31.997
_pdbe_chem_comp_rdkit_properties.chi1n 16.828
_pdbe_chem_comp_rdkit_properties.chi2n 3.651
_pdbe_chem_comp_rdkit_properties.chi3n 3.651
_pdbe_chem_comp_rdkit_properties.chi4n 2.391
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.530
_pdbe_chem_comp_rdkit_properties.kappa1 5.982
_pdbe_chem_comp_rdkit_properties.kappa2 6.271
_pdbe_chem_comp_rdkit_properties.kappa3 2.772
_pdbe_chem_comp_rdkit_properties.Phi 1.389
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R0D UniChem PDBe R0D
R0D UniChem PubChem 146018715
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R0D C10 -0.405 -0.777 0.104 ETKDGv3 1
R0D C13 2.468 0.258 -0.031 ETKDGv3 2
R0D C17 6.387 -0.873 -0.922 ETKDGv3 3
R0D C20 5.856 0.784 1.307 ETKDGv3 4
R0D C21 4.868 0.437 0.473 ETKDGv3 5
R0D C24 -0.971 1.422 1.197 ETKDGv3 6
R0D C26 -4.228 -0.207 -0.103 ETKDGv3 7
R0D C02 -6.172 0.003 -1.533 ETKDGv3 8
R0D C03 -6.938 -0.640 -0.625 ETKDGv3 9
R0D C04 -6.346 -1.119 0.652 ETKDGv3 10
R0D C05 -5.048 -0.890 0.859 ETKDGv3 11
R0D C07 -3.073 -0.846 1.791 ETKDGv3 12
R0D C08 -2.844 -0.132 0.462 ETKDGv3 13
R0D C09 -1.839 -0.894 -0.427 ETKDGv3 14
R0D C12 1.256 1.149 0.064 ETKDGv3 15
R0D C14 2.869 0.031 -1.505 ETKDGv3 16
R0D C16 5.151 -0.404 -0.708 ETKDGv3 17
R0D C18 7.478 -0.508 0.009 ETKDGv3 18
R0D C19 7.228 0.285 1.062 ETKDGv3 19
R0D C25 -2.407 1.332 0.668 ETKDGv3 20
R0D C27 -4.728 0.237 -1.263 ETKDGv3 21
R0D N06 -4.289 -1.256 1.995 ETKDGv3 22
R0D N11 -0.059 0.629 0.360 ETKDGv3 23
R0D O15 4.102 -0.690 -1.584 ETKDGv3 24
R0D O22 3.553 0.851 0.692 ETKDGv3 25
R0D O23 1.406 2.387 -0.125 ETKDGv3 26
R0D CL01 -6.875 0.565 -3.038 ETKDGv3 27
R0D H1 -0.295 -1.361 1.043 ETKDGv3 28
R0D H2 0.266 -1.221 -0.659 ETKDGv3 29
R0D H3 2.258 -0.728 0.437 ETKDGv3 30
R0D H4 6.596 -1.494 -1.783 ETKDGv3 31
R0D H5 5.653 1.405 2.170 ETKDGv3 32
R0D H6 -0.674 2.493 1.217 ETKDGv3 33
R0D H7 -0.927 1.047 2.242 ETKDGv3 34
R0D H8 -7.989 -0.812 -0.820 ETKDGv3 35
R0D H9 -6.948 -1.635 1.388 ETKDGv3 36
R0D H10 -2.294 -1.010 2.524 ETKDGv3 37
R0D H11 -1.865 -0.473 -1.456 ETKDGv3 38
R0D H12 -2.120 -1.968 -0.495 ETKDGv3 39
R0D H13 3.000 1.012 -2.012 ETKDGv3 40
R0D H14 2.082 -0.537 -2.043 ETKDGv3 41
R0D H15 8.480 -0.877 -0.167 ETKDGv3 42
R0D H16 8.028 0.556 1.739 ETKDGv3 43
R0D H17 -3.093 1.845 1.378 ETKDGv3 44
R0D H18 -2.457 1.875 -0.302 ETKDGv3 45
R0D H19 -4.102 0.751 -1.981 ETKDGv3 46
#