data_R0T
#
_chem_comp.id R0T
_chem_comp.name
4-methyl-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H24 F3 N9 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-21
_chem_comp.pdbx_modified_date 2023-03-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 583.566
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R0T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8BOH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R0T N1 N1 N 0 1 Y N N N N N -80.659 -18.627 81.624 -7.967 -0.108 -0.973 N1 R0T 1
R0T N3 N2 N 0 1 N N N N N N -86.826 -19.315 89.654 1.870 -1.712 -0.686 N3 R0T 2
R0T C4 C1 C 0 1 Y N N N N N -81.950 -20.023 84.771 -4.569 -0.988 -0.192 C4 R0T 3
R0T C5 C2 C 0 1 Y N N N N N -84.090 -20.683 85.900 -2.881 -2.679 -0.489 C5 R0T 4
R0T C6 C3 C 0 1 Y N N N N N -84.544 -19.735 86.818 -1.838 -1.785 -0.678 C6 R0T 5
R0T C7 C4 C 0 1 Y N N N N N -85.317 -20.094 87.923 -0.520 -2.218 -0.535 C7 R0T 6
R0T C8 C5 C 0 1 N N N N N N -85.939 -18.978 88.693 0.597 -1.271 -0.735 C8 R0T 7
R0T C10 C6 C 0 1 Y N N N N N -88.195 -18.896 91.572 4.117 -1.104 -0.047 C10 R0T 8
R0T C13 C7 C 0 1 Y N N N N N -91.180 -19.412 94.887 7.916 -1.539 1.729 C13 R0T 9
R0T C15 C8 C 0 1 Y N N N N N -91.042 -18.768 93.696 6.656 -1.660 1.268 C15 R0T 10
R0T C17 C9 C 0 1 Y N N N N N -88.857 -16.342 90.679 3.829 1.332 -1.342 C17 R0T 11
R0T C20 C10 C 0 1 Y N N N N N -85.552 -21.444 88.151 -0.260 -3.549 -0.203 C20 R0T 12
R0T C21 C11 C 0 1 Y N N N N N -85.030 -22.400 87.302 -1.305 -4.431 -0.018 C21 R0T 13
R0T C22 C12 C 0 1 Y N N N N N -84.301 -22.053 86.159 -2.611 -4.002 -0.159 C22 R0T 14
R0T C24 C13 C 0 1 Y N N N N N -79.884 -20.132 85.752 -4.045 1.001 0.868 C24 R0T 15
R0T C26 C14 C 0 1 Y N N N N N -77.732 -20.409 86.996 -1.732 1.351 1.752 C26 R0T 16
R0T C28 C15 C 0 1 Y N N N N N -77.758 -21.255 89.201 -1.238 3.390 2.893 C28 R0T 17
R0T N N3 N 0 1 Y N N N N N -79.588 -18.825 82.439 -7.487 1.026 -0.306 N R0T 18
R0T C C16 C 0 1 N N N N N N -78.239 -18.430 82.033 -8.249 2.246 -0.027 C R0T 19
R0T O O1 O 0 1 N N N N N N -85.690 -17.815 88.405 0.368 -0.096 -0.942 O R0T 20
R0T C1 C17 C 0 1 Y N N N N N -81.714 -19.059 82.279 -7.027 -1.006 -1.047 C1 R0T 21
R0T C11 C18 C 0 1 Y N N N N N -89.057 -18.097 92.316 5.163 -0.194 -0.056 C11 R0T 22
R0T C12 C19 C 0 1 Y N N N N N -89.063 -19.165 94.582 7.471 0.286 0.664 C12 R0T 23
R0T C14 C20 C 0 1 N N N N N N -92.434 -19.872 95.566 8.666 -2.571 2.530 C14 R0T 24
R0T C16 C21 C 0 1 Y N N N N N -89.391 -16.824 91.876 5.016 1.025 -0.705 C16 R0T 25
R0T C18 C22 C 0 1 N N N N N N -89.140 -14.949 90.229 3.673 2.655 -2.046 C18 R0T 26
R0T C19 C23 C 0 1 Y N N N N N -88.000 -17.152 89.916 2.788 0.423 -1.344 C19 R0T 27
R0T C2 C24 C 0 1 Y N N N N N -79.978 -19.373 83.628 -6.188 0.798 0.041 C2 R0T 28
R0T C23 C25 C 0 1 N N N N N N -83.733 -23.120 85.259 -3.747 -4.972 0.046 C23 R0T 29
R0T C25 C26 C 0 1 Y N N N N N -79.120 -20.494 86.954 -3.036 1.821 1.580 C25 R0T 30
R0T C27 C27 C 0 1 Y N N N N N -77.040 -20.792 88.126 -0.827 2.156 2.424 C27 R0T 31
R0T C29 C28 C 0 1 Y N N N N N -79.745 -20.985 88.092 -3.374 3.075 2.088 C29 R0T 32
R0T C3 C29 C 0 1 Y N N N N N -81.356 -19.537 83.564 -5.870 -0.494 -0.422 C3 R0T 33
R0T C9 C30 C 0 1 Y N N N N N -87.682 -18.434 90.364 2.927 -0.796 -0.692 C9 R0T 34
R0T F F1 F 0 1 N N N N N N -89.426 -14.896 88.943 2.354 3.102 -1.912 F R0T 35
R0T F1 F2 F 0 1 N N N N N N -90.130 -14.364 90.896 4.542 3.591 -1.476 F1 R0T 36
R0T F2 F3 F 0 1 N N N N N N -88.114 -14.149 90.418 3.978 2.500 -3.402 F2 R0T 37
R0T N2 N4 N 0 1 N N N N N N -83.258 -20.376 84.841 -4.205 -2.249 -0.625 N2 R0T 38
R0T N4 N5 N 0 1 Y N N N N N -89.680 -18.624 93.492 6.369 -0.504 0.590 N4 R0T 39
R0T N5 N6 N 0 1 Y N N N N N -89.919 -19.654 95.452 8.389 -0.344 1.347 N5 R0T 40
R0T N6 N7 N 0 1 Y N N N N N -81.215 -20.317 85.831 -3.703 -0.214 0.449 N6 R0T 41
R0T N7 N8 N 0 1 Y N N N N N -79.095 -21.361 89.207 -2.478 3.805 2.720 N7 R0T 42
R0T N8 N9 N 0 1 Y N N N N N -79.208 -19.655 84.687 -5.254 1.503 0.674 N8 R0T 43
R0T H6 H1 H 0 1 N N N N N N -86.886 -20.285 89.889 2.053 -2.663 -0.647 H6 R0T 44
R0T H5 H2 H 0 1 N N N N N N -84.290 -18.696 86.669 -2.046 -0.757 -0.935 H5 R0T 45
R0T H7 H3 H 0 1 N N N N N N -87.923 -19.877 91.933 4.230 -2.053 0.457 H7 R0T 46
R0T H12 H4 H 0 1 N N N N N N -91.835 -18.436 93.042 5.999 -2.506 1.405 H12 R0T 47
R0T H15 H5 H 0 1 N N N N N N -86.148 -21.748 88.999 0.759 -3.889 -0.093 H15 R0T 48
R0T H16 H6 H 0 1 N N N N N N -85.189 -23.444 87.526 -1.101 -5.460 0.239 H16 R0T 49
R0T H20 H7 H 0 1 N N N N N N -77.192 -20.040 86.137 -1.438 0.382 1.376 H20 R0T 50
R0T H22 H8 H 0 1 N N N N N N -77.218 -21.549 90.089 -0.535 4.020 3.417 H22 R0T 51
R0T H1 H9 H 0 1 N N N N N N -78.274 -17.984 81.028 -8.747 2.151 0.938 H1 R0T 52
R0T H2 H10 H 0 1 N N N N N N -77.842 -17.694 82.748 -7.572 3.100 -0.005 H2 R0T 53
R0T H H11 H 0 1 N N N N N N -77.587 -19.316 82.018 -8.995 2.394 -0.808 H R0T 54
R0T H3 H12 H 0 1 N N N N N N -82.721 -19.051 81.889 -7.117 -1.978 -1.508 H3 R0T 55
R0T H8 H13 H 0 1 N N N N N N -87.992 -19.189 94.715 7.573 1.270 0.230 H8 R0T 56
R0T H11 H14 H 0 1 N N N N N N -92.176 -20.386 96.504 8.493 -2.402 3.593 H11 R0T 57
R0T H10 H15 H 0 1 N N N N N N -93.071 -19.003 95.787 8.316 -3.567 2.259 H10 R0T 58
R0T H9 H16 H 0 1 N N N N N N -92.976 -20.565 94.905 9.732 -2.491 2.319 H9 R0T 59
R0T H13 H17 H 0 1 N N N N N N -90.061 -16.208 92.457 5.831 1.734 -0.712 H13 R0T 60
R0T H14 H18 H 0 1 N N N N N N -87.589 -16.784 88.987 1.863 0.663 -1.846 H14 R0T 61
R0T H19 H19 H 0 1 N N N N N N -82.725 -23.394 85.605 -3.992 -5.449 -0.903 H19 R0T 62
R0T H17 H20 H 0 1 N N N N N N -84.383 -24.007 85.286 -3.450 -5.732 0.769 H17 R0T 63
R0T H18 H21 H 0 1 N N N N N N -83.676 -22.738 84.229 -4.619 -4.436 0.420 H18 R0T 64
R0T H21 H22 H 0 1 N N N N N N -75.962 -20.729 88.164 0.188 1.823 2.580 H21 R0T 65
R0T H23 H23 H 0 1 N N N N N N -80.822 -21.070 88.081 -4.378 3.451 1.962 H23 R0T 66
R0T H4 H24 H 0 1 N N N N N N -83.709 -20.423 83.950 -4.867 -2.835 -1.023 H4 R0T 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R0T N1 C1 DOUB Y N 1
R0T N1 N SING Y N 2
R0T C N SING N N 3
R0T C1 C3 SING Y N 4
R0T N C2 SING Y N 5
R0T C3 C2 DOUB Y N 6
R0T C3 C4 SING Y N 7
R0T C2 N8 SING Y N 8
R0T N8 C24 DOUB Y N 9
R0T C4 N2 SING N N 10
R0T C4 N6 DOUB Y N 11
R0T N2 C5 SING N N 12
R0T C23 C22 SING N N 13
R0T C24 N6 SING Y N 14
R0T C24 C25 SING N N 15
R0T C5 C22 DOUB Y N 16
R0T C5 C6 SING Y N 17
R0T C22 C21 SING Y N 18
R0T C6 C7 DOUB Y N 19
R0T C25 C26 DOUB Y N 20
R0T C25 C29 SING Y N 21
R0T C26 C27 SING Y N 22
R0T C21 C20 DOUB Y N 23
R0T C7 C20 SING Y N 24
R0T C7 C8 SING N N 25
R0T C29 N7 DOUB Y N 26
R0T C27 C28 DOUB Y N 27
R0T O C8 DOUB N N 28
R0T C8 N3 SING N N 29
R0T F C18 SING N N 30
R0T C28 N7 SING Y N 31
R0T N3 C9 SING N N 32
R0T C19 C9 DOUB Y N 33
R0T C19 C17 SING Y N 34
R0T C18 F2 SING N N 35
R0T C18 C17 SING N N 36
R0T C18 F1 SING N N 37
R0T C9 C10 SING Y N 38
R0T C17 C16 DOUB Y N 39
R0T C10 C11 DOUB Y N 40
R0T C16 C11 SING Y N 41
R0T C11 N4 SING N N 42
R0T N4 C15 SING Y N 43
R0T N4 C12 SING Y N 44
R0T C15 C13 DOUB Y N 45
R0T C12 N5 DOUB Y N 46
R0T C13 N5 SING Y N 47
R0T C13 C14 SING N N 48
R0T N3 H6 SING N N 49
R0T C6 H5 SING N N 50
R0T C10 H7 SING N N 51
R0T C15 H12 SING N N 52
R0T C20 H15 SING N N 53
R0T C21 H16 SING N N 54
R0T C26 H20 SING N N 55
R0T C28 H22 SING N N 56
R0T C H1 SING N N 57
R0T C H2 SING N N 58
R0T C H SING N N 59
R0T C1 H3 SING N N 60
R0T C12 H8 SING N N 61
R0T C14 H11 SING N N 62
R0T C14 H10 SING N N 63
R0T C14 H9 SING N N 64
R0T C16 H13 SING N N 65
R0T C19 H14 SING N N 66
R0T C23 H19 SING N N 67
R0T C23 H17 SING N N 68
R0T C23 H18 SING N N 69
R0T C27 H21 SING N N 70
R0T C29 H23 SING N N 71
R0T N2 H4 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R0T InChI InChI 1.06 InChI=1S/C30H24F3N9O/c1-17-6-7-19(29(43)37-22-10-21(30(31,32)33)11-23(12-22)42-15-18(2)35-16-42)9-25(17)38-27-24-14-36-41(3)28(24)40-26(39-27)20-5-4-8-34-13-20/h4-16H,1-3H3,(H,37,43)(H,38,39,40)
R0T InChIKey InChI 1.06 PURQMMYVBMISCI-UHFFFAOYSA-N
R0T SMILES_CANONICAL CACTVS 3.385 Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cc(cc(c4)C(F)(F)F)n5cnc(C)c5)nc(nc12)c6cccnc6
R0T SMILES CACTVS 3.385 Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cc(cc(c4)C(F)(F)F)n5cnc(C)c5)nc(nc12)c6cccnc6
R0T SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 Cc1ccc(cc1Nc2c3cnn(c3nc(n2)c4cccnc4)C)C(=O)Nc5cc(cc(c5)n6cc(nc6)C)C(F)(F)F
R0T SMILES "OpenEye OEToolkits" 3.1.0.0 Cc1ccc(cc1Nc2c3cnn(c3nc(n2)c4cccnc4)C)C(=O)Nc5cc(cc(c5)n6cc(nc6)C)C(F)(F)F
#
_pdbx_chem_comp_identifier.comp_id R0T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier
4-methyl-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R0T 'Create component' 2022-11-21 PDBE
R0T 'Initial release' 2023-03-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R0T N1 N 22.151 -1.125 1
R0T N3 N 12.062 2.625 2
R0T C4 C 18.557 0.375 3
R0T C5 C 17.258 2.625 4
R0T C6 C 15.959 1.875 5
R0T C7 C 14.660 2.625 6
R0T C8 C 13.361 1.875 7
R0T C10 C 9.464 2.625 8
R0T C13 C 4.492 3.130 9
R0T C15 C 5.495 2.015 10
R0T C17 C 9.464 -0.375 11
R0T C20 C 14.660 4.125 12
R0T C21 C 15.959 4.875 13
R0T C22 C 17.258 4.125 14
R0T C24 C 17.258 -1.875 15
R0T C26 C 14.660 -1.875 16
R0T C28 C 13.361 -4.125 17
R0T N N 21.276 -2.332 18
R0T C C 21.741 -3.758 19
R0T O O 13.361 0.375 20
R0T C1 C 21.276 0.082 21
R0T C11 C 8.165 1.875 22
R0T C12 C 6.709 4.117 23
R0T C14 C 3.000 2.973 24
R0T C16 C 8.165 0.375 25
R0T C18 C 9.464 -1.875 26
R0T C19 C 10.763 0.375 27
R0T C2 C 19.856 -1.875 28
R0T C23 C 18.557 4.875 29
R0T C25 C 15.959 -2.625 30
R0T C27 C 13.361 -2.625 31
R0T C29 C 15.959 -4.125 32
R0T C3 C 19.856 -0.375 33
R0T C9 C 10.763 1.875 34
R0T F F 10.964 -1.875 35
R0T F1 F 7.964 -1.875 36
R0T F2 F 9.464 -3.375 37
R0T N2 N 18.557 1.875 38
R0T N4 N 6.866 2.625 39
R0T N5 N 5.242 4.429 40
R0T N6 N 17.258 -0.375 41
R0T N7 N 14.660 -4.875 42
R0T N8 N 18.557 -2.625 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R0T N1 C1 DOUBLE NONE 1
R0T N1 N SINGLE NONE 2
R0T C N SINGLE NONE 3
R0T C1 C3 SINGLE NONE 4
R0T N C2 SINGLE NONE 5
R0T C3 C2 DOUBLE NONE 6
R0T C3 C4 SINGLE NONE 7
R0T C2 N8 SINGLE NONE 8
R0T N8 C24 DOUBLE NONE 9
R0T C4 N2 SINGLE NONE 10
R0T C4 N6 DOUBLE NONE 11
R0T N2 C5 SINGLE NONE 12
R0T C23 C22 SINGLE NONE 13
R0T C24 N6 SINGLE NONE 14
R0T C24 C25 SINGLE NONE 15
R0T C5 C22 SINGLE NONE 16
R0T C5 C6 DOUBLE NONE 17
R0T C22 C21 DOUBLE NONE 18
R0T C6 C7 SINGLE NONE 19
R0T C25 C26 DOUBLE NONE 20
R0T C25 C29 SINGLE NONE 21
R0T C26 C27 SINGLE NONE 22
R0T C21 C20 SINGLE NONE 23
R0T C7 C20 DOUBLE NONE 24
R0T C7 C8 SINGLE NONE 25
R0T C29 N7 DOUBLE NONE 26
R0T C27 C28 DOUBLE NONE 27
R0T O C8 DOUBLE NONE 28
R0T C8 N3 SINGLE NONE 29
R0T F C18 SINGLE NONE 30
R0T C28 N7 SINGLE NONE 31
R0T N3 C9 SINGLE NONE 32
R0T C19 C9 SINGLE NONE 33
R0T C19 C17 DOUBLE NONE 34
R0T C18 F2 SINGLE NONE 35
R0T C18 C17 SINGLE NONE 36
R0T C18 F1 SINGLE NONE 37
R0T C9 C10 DOUBLE NONE 38
R0T C17 C16 SINGLE NONE 39
R0T C10 C11 SINGLE NONE 40
R0T C16 C11 DOUBLE NONE 41
R0T C11 N4 SINGLE NONE 42
R0T N4 C15 SINGLE NONE 43
R0T N4 C12 SINGLE NONE 44
R0T C15 C13 DOUBLE NONE 45
R0T C12 N5 DOUBLE NONE 46
R0T C13 N5 SINGLE NONE 47
R0T C13 C14 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R0T MurckoScaffold S1 scaffold 'O=C(Nc1cccc(-n2ccnc2)c1)c1cccc(Nc2nc(-c3cccnc3)nc3[nH]ncc23)c1' InChI=1S/C26H19N9O/c36-26(31-20-7-2-8-21(13-20)35-11-10-28-16-35)17-4-1-6-19(12-17)30-24-22-15-29-34-25(22)33-23(32-24)18-5-3-9-27-14-18/h1-16H,(H,31,36)(H2,29,30,32,33,34) WQRIISOMQNZZBE-UHFFFAOYSA-N
R0T amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R0T imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
R0T phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R0T pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
R0T pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
R0T pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
R0T Z56983806 F7 fragment Cc1cccc(Nc2ncnc3c2cnn3C)c1 InChI=1S/C13H13N5/c1-9-4-3-5-10(6-9)17-12-11-7-16-18(2)13(11)15-8-14-12/h3-8H,1-2H3,(H,14,15,17) MLUHWTUFJZKUST-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R0T N1 S1 1
R0T N3 S1 1
R0T C4 S1 1
R0T C5 S1 1
R0T C6 S1 1
R0T C7 S1 1
R0T C8 S1 1
R0T C10 S1 1
R0T C13 S1 1
R0T C15 S1 1
R0T C17 S1 1
R0T C20 S1 1
R0T C21 S1 1
R0T C22 S1 1
R0T C24 S1 1
R0T C26 S1 1
R0T C28 S1 1
R0T N S1 1
R0T O S1 1
R0T C1 S1 1
R0T C11 S1 1
R0T C12 S1 1
R0T C16 S1 1
R0T C19 S1 1
R0T C2 S1 1
R0T C25 S1 1
R0T C27 S1 1
R0T C29 S1 1
R0T C3 S1 1
R0T C9 S1 1
R0T N2 S1 1
R0T N4 S1 1
R0T N5 S1 1
R0T N6 S1 1
R0T N7 S1 1
R0T N8 S1 1
R0T N3 F1 1
R0T C8 F1 1
R0T O F1 1
R0T C7 F1 1
R0T C13 F2 1
R0T C15 F2 1
R0T N4 F2 1
R0T C12 F2 1
R0T N5 F2 1
R0T C5 F3 1
R0T C22 F3 1
R0T C21 F3 1
R0T C20 F3 1
R0T C7 F3 1
R0T C6 F3 1
R0T C10 F3 2
R0T C9 F3 2
R0T C19 F3 2
R0T C17 F3 2
R0T C16 F3 2
R0T C11 F3 2
R0T C1 F4 1
R0T C3 F4 1
R0T C2 F4 1
R0T N F4 1
R0T N1 F4 1
R0T C28 F5 1
R0T C27 F5 1
R0T C26 F5 1
R0T C25 F5 1
R0T C29 F5 1
R0T N7 F5 1
R0T C3 F6 1
R0T C2 F6 1
R0T N8 F6 1
R0T C24 F6 1
R0T N6 F6 1
R0T C4 F6 1
R0T C8 F7 1
R0T C7 F7 1
R0T C20 F7 1
R0T C21 F7 1
R0T C22 F7 1
R0T C5 F7 1
R0T N2 F7 1
R0T C4 F7 1
R0T N6 F7 1
R0T C24 F7 1
R0T N8 F7 1
R0T C2 F7 1
R0T N F7 1
R0T C F7 1
R0T N1 F7 1
R0T C1 F7 1
R0T C3 F7 1
R0T C6 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id R0T
_pdbe_chem_comp_rdkit_properties.exactmw 583.206
_pdbe_chem_comp_rdkit_properties.amw 583.578
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 276.664
_pdbe_chem_comp_rdkit_properties.tpsa 115.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.883
_pdbe_chem_comp_rdkit_properties.CrippenMR 147.528
_pdbe_chem_comp_rdkit_properties.chi0v 20.567
_pdbe_chem_comp_rdkit_properties.chi1v 11.246
_pdbe_chem_comp_rdkit_properties.chi2v 5.172
_pdbe_chem_comp_rdkit_properties.chi3v 5.172
_pdbe_chem_comp_rdkit_properties.chi4v 3.331
_pdbe_chem_comp_rdkit_properties.chi0n 44.567
_pdbe_chem_comp_rdkit_properties.chi1n 23.140
_pdbe_chem_comp_rdkit_properties.chi2n 5.172
_pdbe_chem_comp_rdkit_properties.chi3n 5.172
_pdbe_chem_comp_rdkit_properties.chi4n 3.331
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.590
_pdbe_chem_comp_rdkit_properties.kappa1 11.245
_pdbe_chem_comp_rdkit_properties.kappa2 10.670
_pdbe_chem_comp_rdkit_properties.kappa3 5.642
_pdbe_chem_comp_rdkit_properties.Phi 2.790
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R0T UniChem PDBe R0T
R0T UniChem SureChEMBL SCHEMBL24532029
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R0T N1 5.550 5.013 -0.880 ETKDGv3 1
R0T N3 -2.503 -1.715 0.519 ETKDGv3 2
R0T C4 3.658 1.877 -0.470 ETKDGv3 3
R0T C5 1.487 0.783 -1.116 ETKDGv3 4
R0T C6 0.311 0.744 -0.470 ETKDGv3 5
R0T C7 -0.556 -0.459 -0.533 ETKDGv3 6
R0T C8 -1.845 -0.475 0.199 ETKDGv3 7
R0T C10 -4.818 -1.007 0.315 ETKDGv3 8
R0T C13 -8.152 1.530 -0.873 ETKDGv3 9
R0T C15 -6.986 1.029 -0.498 ETKDGv3 10
R0T C17 -5.630 -3.057 2.085 ETKDGv3 11
R0T C20 -0.156 -1.511 -1.269 ETKDGv3 12
R0T C21 1.117 -1.465 -2.013 ETKDGv3 13
R0T C22 1.896 -0.371 -1.974 ETKDGv3 14
R0T C24 5.509 0.660 0.493 ETKDGv3 15
R0T C26 5.290 -1.758 0.908 ETKDGv3 16
R0T C28 7.086 -3.089 1.860 ETKDGv3 17
R0T N 6.435 4.177 -0.181 ETKDGv3 18
R0T C 7.882 4.324 -0.218 ETKDGv3 19
R0T O -2.348 0.616 0.585 ETKDGv3 20
R0T C1 4.414 4.397 -1.017 ETKDGv3 21
R0T C11 -6.253 -1.142 0.667 ETKDGv3 22
R0T C12 -8.642 -0.366 0.045 ETKDGv3 23
R0T C14 -8.356 2.879 -1.476 ETKDGv3 24
R0T C16 -6.629 -2.118 1.515 ETKDGv3 25
R0T C18 -6.057 -4.118 3.068 ETKDGv3 26
R0T C19 -4.330 -2.889 1.787 ETKDGv3 27
R0T C2 5.731 2.970 0.048 ETKDGv3 28
R0T C23 3.155 -0.333 -2.796 ETKDGv3 29
R0T C25 6.039 -0.640 0.963 ETKDGv3 30
R0T C27 5.840 -3.043 1.379 ETKDGv3 31
R0T C29 7.419 -0.745 1.507 ETKDGv3 32
R0T C3 4.515 3.066 -0.423 ETKDGv3 33
R0T C9 -3.895 -1.818 0.863 ETKDGv3 34
R0T F -5.883 -3.645 4.355 ETKDGv3 35
R0T F1 -5.302 -5.267 2.902 ETKDGv3 36
R0T F2 -7.389 -4.446 2.886 ETKDGv3 37
R0T N2 2.319 1.945 -0.978 ETKDGv3 38
R0T N4 -7.222 -0.233 0.112 ETKDGv3 39
R0T N5 -9.216 0.647 -0.521 ETKDGv3 40
R0T N6 4.151 0.755 -0.013 ETKDGv3 41
R0T N7 7.879 -1.892 1.916 ETKDGv3 42
R0T N8 6.270 1.726 0.510 ETKDGv3 43
R0T H6 -1.912 -2.569 0.633 ETKDGv3 44
R0T H5 0.012 1.588 0.141 ETKDGv3 45
R0T H7 -4.521 -0.269 -0.417 ETKDGv3 46
R0T H12 -6.025 1.514 -0.600 ETKDGv3 47
R0T H15 -0.770 -2.397 -1.365 ETKDGv3 48
R0T H16 1.398 -2.320 -2.616 ETKDGv3 49
R0T H20 4.280 -1.740 0.519 ETKDGv3 50
R0T H22 7.501 -4.025 2.208 ETKDGv3 51
R0T H1 8.338 3.791 0.642 ETKDGv3 52
R0T H2 8.150 5.400 -0.157 ETKDGv3 53
R0T H 8.275 3.900 -1.165 ETKDGv3 54
R0T H3 3.562 4.811 -1.538 ETKDGv3 55
R0T H8 -9.196 -1.220 0.410 ETKDGv3 56
R0T H11 -7.555 3.094 -2.215 ETKDGv3 57
R0T H10 -9.338 2.916 -1.993 ETKDGv3 58
R0T H9 -8.336 3.650 -0.678 ETKDGv3 59
R0T H13 -7.665 -2.216 1.808 ETKDGv3 60
R0T H14 -3.579 -3.536 2.227 ETKDGv3 61
R0T H19 3.013 -0.873 -3.757 ETKDGv3 62
R0T H17 3.438 0.711 -3.043 ETKDGv3 63
R0T H18 3.982 -0.818 -2.236 ETKDGv3 64
R0T H21 5.237 -3.941 1.334 ETKDGv3 65
R0T H23 8.054 0.129 1.569 ETKDGv3 66
R0T H4 1.876 2.886 -1.082 ETKDGv3 67
#