data_R31
#
_chem_comp.id R31
_chem_comp.name
(2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-4-hydroxy-6-{4-[2-(3-methoxypropoxy)phenyl]-3-oxopiperazin-1-yl}-2-(propan-2-yl)hexanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H47 N5 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-05-30
_chem_comp.pdbx_modified_date 2012-07-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 549.703
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R31
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VSW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R31 C1 C1 C 0 1 N N N N N N 176.580 198.788 97.173 2.372 -1.939 -0.765 C1 R31 1
R31 N2 N2 N 0 1 N N N N N N 177.808 199.383 96.686 2.155 -1.804 0.681 N2 R31 2
R31 C3 C3 C 0 1 N N N N N N 178.331 198.910 95.442 3.109 -2.648 1.418 C3 R31 3
R31 C4 C4 C 0 1 N N N N N N 177.282 198.976 94.306 4.512 -2.063 1.252 C4 R31 4
R31 N5 N5 N 0 1 N N N N N N 175.992 198.363 94.718 4.788 -1.818 -0.161 N5 R31 5
R31 C6 C6 C 0 1 N N N N N N 175.579 198.456 96.043 3.827 -1.743 -1.084 C6 R31 6
R31 C7 C7 C 0 1 Y N N N N N 175.206 197.721 93.790 6.120 -1.656 -0.564 C7 R31 7
R31 C8 C8 C 0 1 Y N N N N N 174.450 198.475 92.870 6.696 -0.387 -0.576 C8 R31 8
R31 C9 C9 C 0 1 Y N N N N N 173.599 197.819 91.943 8.014 -0.232 -0.976 C9 R31 9
R31 C10 C10 C 0 1 Y N N N N N 173.413 196.401 92.051 8.753 -1.335 -1.362 C10 R31 10
R31 C11 C11 C 0 1 Y N N N N N 174.203 195.648 92.951 8.182 -2.594 -1.350 C11 R31 11
R31 C12 C12 C 0 1 Y N N N N N 175.148 196.308 93.765 6.871 -2.758 -0.947 C12 R31 12
R31 O13 O13 O 0 1 N N N N N N 174.505 199.816 92.856 5.967 0.696 -0.197 O13 R31 13
R31 C14 C14 C 0 1 N N N N N N 174.811 200.677 91.800 6.623 1.965 -0.235 C14 R31 14
R31 C15 C15 C 0 1 N N N N N N 175.490 201.950 92.322 5.652 3.055 0.222 C15 R31 15
R31 C16 C16 C 0 1 N N N N N N 175.661 202.924 91.153 6.354 4.414 0.182 C16 R31 16
R31 O17 O17 O 0 1 N N N N N N 176.966 202.815 90.620 5.447 5.432 0.609 O17 R31 17
R31 C18 C18 C 0 1 N N N N N N 177.420 204.099 90.238 6.007 6.747 0.609 C18 R31 18
R31 C19 C19 C 0 1 N N N N N N 178.700 199.998 97.617 0.770 -2.140 1.039 C19 R31 19
R31 C20 C20 C 0 1 N N S N N N 178.102 201.168 98.437 -0.179 -1.105 0.431 C20 R31 20
R31 C21 C21 C 0 1 N N S N N N 178.805 201.310 99.823 -1.607 -1.381 0.905 C21 R31 21
R31 N22 N22 N 0 1 N N N N N N 178.279 202.401 97.655 0.227 0.241 0.857 N22 R31 22
R31 C23 C23 C 0 1 N N N N N N 178.057 202.201 100.849 -2.556 -0.346 0.297 C23 R31 23
R31 O24 O24 O 0 1 N N N N N N 180.106 201.839 99.633 -1.661 -1.297 2.330 O24 R31 24
R31 C25 C25 C 0 1 N N S N N N 178.728 202.691 102.167 -4.001 -0.719 0.633 C25 R31 25
R31 C26 C26 C 0 1 N N N N N N 179.115 201.475 103.032 -4.941 0.198 -0.105 C26 R31 26
R31 N27 N27 N 0 1 N N N N N N 180.389 201.108 103.209 -6.260 -0.077 -0.143 N27 R31 27
R31 O28 O28 O 0 1 N N N N N N 178.223 200.805 103.571 -4.511 1.184 -0.665 O28 R31 28
R31 C29 C29 C 0 1 N N N N N N 177.891 203.781 102.952 -4.227 -0.577 2.139 C29 R31 29
R31 C30 C30 C 0 1 N N N N N N 180.795 199.762 103.629 -7.158 0.748 -0.956 C30 R31 30
R31 C31 C31 C 0 1 N N N N N N 181.499 199.638 104.989 -8.590 0.225 -0.823 C31 R31 31
R31 C32 C32 C 0 1 N N N N N N 182.528 200.804 105.058 -9.513 1.074 -1.659 C32 R31 32
R31 N33 N33 N 0 1 N N N N N N 183.616 200.761 104.238 -10.832 0.798 -1.697 N33 R31 33
R31 C34 C34 C 0 1 N N N N N N 180.481 199.766 106.158 -8.651 -1.224 -1.308 C34 R31 34
R31 C35 C35 C 0 1 N N N N N N 182.298 198.302 105.104 -9.023 0.292 0.642 C35 R31 35
R31 O36 O36 O 0 1 N N N N N N 182.352 201.753 105.815 -9.069 2.004 -2.298 O36 R31 36
R31 C37 C37 C 0 1 N N N N N N 178.595 204.326 104.246 -3.955 0.868 2.562 C37 R31 37
R31 C38 C38 C 0 1 N N N N N N 177.300 204.963 102.152 -5.674 -0.942 2.475 C38 R31 38
R31 O39 O39 O 0 1 N N N N N N 174.429 198.258 96.383 4.141 -1.505 -2.231 O39 R31 39
R31 H1 H1 H 0 1 N N N N N N 176.101 199.492 97.869 2.061 -2.933 -1.087 H1 R31 40
R31 H2 H2 H 0 1 N N N N N N 176.828 197.858 97.705 1.782 -1.188 -1.291 H2 R31 41
R31 H4 H4 H 0 1 N N N N N N 178.653 197.866 95.567 2.842 -2.664 2.475 H4 R31 42
R31 H5 H5 H 0 1 N N N N N N 179.196 199.530 95.162 3.083 -3.663 1.020 H5 R31 43
R31 H6 H6 H 0 1 N N N N N N 177.670 198.436 93.430 4.580 -1.125 1.802 H6 R31 44
R31 H7 H7 H 0 1 N N N N N N 177.108 200.029 94.041 5.247 -2.765 1.647 H7 R31 45
R31 H8 H8 H 0 1 N N N N N N 173.099 198.380 91.167 8.463 0.750 -0.987 H8 R31 46
R31 H9 H9 H 0 1 N N N N N N 172.668 195.907 91.444 9.780 -1.212 -1.673 H9 R31 47
R31 H10 H10 H 0 1 N N N N N N 174.084 194.576 93.015 8.764 -3.452 -1.653 H10 R31 48
R31 H11 H11 H 0 1 N N N N N N 175.830 195.731 94.372 6.427 -3.742 -0.939 H11 R31 49
R31 H12 H12 H 0 1 N N N N N N 173.883 200.951 91.276 7.488 1.947 0.429 H12 R31 50
R31 H13 H13 H 0 1 N N N N N N 175.490 200.166 91.101 6.951 2.174 -1.253 H13 R31 51
R31 H14 H14 H 0 1 N N N N N N 176.475 201.699 92.743 4.787 3.073 -0.441 H14 R31 52
R31 H15 H15 H 0 1 N N N N N N 174.865 202.411 93.101 5.324 2.846 1.241 H15 R31 53
R31 H16 H16 H 0 1 N N N N N N 175.497 203.952 91.508 7.219 4.396 0.846 H16 R31 54
R31 H17 H17 H 0 1 N N N N N N 174.926 202.686 90.370 6.682 4.623 -0.836 H17 R31 55
R31 H18 H18 H 0 1 N N N N N N 178.435 204.021 89.822 5.256 7.462 0.945 H18 R31 56
R31 H19 H19 H 0 1 N N N N N N 176.744 204.516 89.477 6.864 6.777 1.281 H19 R31 57
R31 H20 H20 H 0 1 N N N N N N 177.434 204.760 91.117 6.327 7.004 -0.401 H20 R31 58
R31 H21 H21 H 0 1 N N N N N N 179.038 199.226 98.324 0.524 -3.129 0.653 H21 R31 59
R31 H22 H22 H 0 1 N N N N N N 179.564 200.384 97.055 0.664 -2.137 2.124 H22 R31 60
R31 H23 H23 H 0 1 N N N N N N 177.031 200.978 98.601 -0.138 -1.169 -0.657 H23 R31 61
R31 H24 H24 H 0 1 N N N N N N 178.884 200.302 100.256 -1.908 -2.380 0.589 H24 R31 62
R31 H25 H25 H 0 1 N N N N N N 177.901 203.175 98.162 -0.345 0.947 0.417 H25 R31 63
R31 H26 H26 H 0 1 N N N N N N 179.253 202.554 97.491 0.197 0.326 1.862 H26 R31 64
R31 H28 H28 H 0 1 N N N N N N 177.752 203.107 100.304 -2.330 0.638 0.706 H28 R31 65
R31 H29 H29 H 0 1 N N N N N N 177.163 201.637 101.151 -2.428 -0.328 -0.786 H29 R31 66
R31 H30 H30 H 0 1 N N N N N N 180.538 201.927 100.474 -1.479 -0.413 2.679 H30 R31 67
R31 H31 H31 H 0 1 N N N N N N 179.669 203.180 101.874 -4.189 -1.750 0.333 H31 R31 68
R31 H32 H32 H 0 1 N N N N N N 181.104 201.788 103.046 -6.615 -0.822 0.368 H32 R31 69
R31 H33 H33 H 0 1 N N N N N N 177.014 203.233 103.327 -3.551 -1.245 2.673 H33 R31 70
R31 H34 H34 H 0 1 N N N N N N 179.889 199.139 103.666 -7.114 1.781 -0.610 H34 R31 71
R31 H35 H35 H 0 1 N N N N N N 181.480 199.368 102.864 -6.849 0.700 -2.000 H35 R31 72
R31 H36 H36 H 0 1 N N N N N N 184.281 201.508 104.250 -11.187 0.054 -1.186 H36 R31 73
R31 H37 H37 H 0 1 N N N N N N 183.750 199.982 103.625 -11.426 1.344 -2.235 H37 R31 74
R31 H38 H38 H 0 1 N N N N N N 181.010 199.674 107.118 -7.983 -1.838 -0.703 H38 R31 75
R31 H39 H39 H 0 1 N N N N N N 179.985 200.746 106.106 -9.671 -1.596 -1.214 H39 R31 76
R31 H40 H40 H 0 1 N N N N N N 179.728 198.969 106.077 -8.342 -1.272 -2.352 H40 R31 77
R31 H41 H41 H 0 1 N N N N N N 182.786 198.250 106.088 -8.980 1.325 0.988 H41 R31 78
R31 H42 H42 H 0 1 N N N N N N 181.609 197.452 104.991 -10.044 -0.080 0.737 H42 R31 79
R31 H43 H43 H 0 1 N N N N N N 183.062 198.262 104.313 -8.356 -0.322 1.247 H43 R31 80
R31 H44 H44 H 0 1 N N N N N N 179.016 203.485 104.817 -4.685 1.528 2.091 H44 R31 81
R31 H45 H45 H 0 1 N N N N N N 179.402 205.017 103.961 -4.036 0.952 3.645 H45 R31 82
R31 H46 H46 H 0 1 N N N N N N 177.859 204.858 104.867 -2.951 1.156 2.249 H46 R31 83
R31 H47 H47 H 0 1 N N N N N N 176.750 205.629 102.833 -5.881 -1.957 2.134 H47 R31 84
R31 H48 H48 H 0 1 N N N N N N 178.115 205.523 101.670 -5.823 -0.884 3.553 H48 R31 85
R31 H49 H49 H 0 1 N N N N N N 176.614 204.578 101.383 -6.350 -0.247 1.977 H49 R31 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R31 C18 O17 SING N N 1
R31 O17 C16 SING N N 2
R31 C16 C15 SING N N 3
R31 C14 C15 SING N N 4
R31 C14 O13 SING N N 5
R31 C9 C10 DOUB Y N 6
R31 C9 C8 SING Y N 7
R31 C10 C11 SING Y N 8
R31 O13 C8 SING N N 9
R31 C8 C7 DOUB Y N 10
R31 C11 C12 DOUB Y N 11
R31 C12 C7 SING Y N 12
R31 C7 N5 SING N N 13
R31 C4 N5 SING N N 14
R31 C4 C3 SING N N 15
R31 N5 C6 SING N N 16
R31 C3 N2 SING N N 17
R31 C6 O39 DOUB N N 18
R31 C6 C1 SING N N 19
R31 N2 C1 SING N N 20
R31 N2 C19 SING N N 21
R31 C19 C20 SING N N 22
R31 N22 C20 SING N N 23
R31 C20 C21 SING N N 24
R31 O24 C21 SING N N 25
R31 C21 C23 SING N N 26
R31 C23 C25 SING N N 27
R31 C38 C29 SING N N 28
R31 C25 C29 SING N N 29
R31 C25 C26 SING N N 30
R31 C29 C37 SING N N 31
R31 C26 N27 SING N N 32
R31 C26 O28 DOUB N N 33
R31 N27 C30 SING N N 34
R31 C30 C31 SING N N 35
R31 N33 C32 SING N N 36
R31 C31 C32 SING N N 37
R31 C31 C35 SING N N 38
R31 C31 C34 SING N N 39
R31 C32 O36 DOUB N N 40
R31 C1 H1 SING N N 41
R31 C1 H2 SING N N 42
R31 C3 H4 SING N N 43
R31 C3 H5 SING N N 44
R31 C4 H6 SING N N 45
R31 C4 H7 SING N N 46
R31 C9 H8 SING N N 47
R31 C10 H9 SING N N 48
R31 C11 H10 SING N N 49
R31 C12 H11 SING N N 50
R31 C14 H12 SING N N 51
R31 C14 H13 SING N N 52
R31 C15 H14 SING N N 53
R31 C15 H15 SING N N 54
R31 C16 H16 SING N N 55
R31 C16 H17 SING N N 56
R31 C18 H18 SING N N 57
R31 C18 H19 SING N N 58
R31 C18 H20 SING N N 59
R31 C19 H21 SING N N 60
R31 C19 H22 SING N N 61
R31 C20 H23 SING N N 62
R31 C21 H24 SING N N 63
R31 N22 H25 SING N N 64
R31 N22 H26 SING N N 65
R31 C23 H28 SING N N 66
R31 C23 H29 SING N N 67
R31 O24 H30 SING N N 68
R31 C25 H31 SING N N 69
R31 N27 H32 SING N N 70
R31 C29 H33 SING N N 71
R31 C30 H34 SING N N 72
R31 C30 H35 SING N N 73
R31 N33 H36 SING N N 74
R31 N33 H37 SING N N 75
R31 C34 H38 SING N N 76
R31 C34 H39 SING N N 77
R31 C34 H40 SING N N 78
R31 C35 H41 SING N N 79
R31 C35 H42 SING N N 80
R31 C35 H43 SING N N 81
R31 C37 H44 SING N N 82
R31 C37 H45 SING N N 83
R31 C37 H46 SING N N 84
R31 C38 H47 SING N N 85
R31 C38 H48 SING N N 86
R31 C38 H49 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R31 SMILES ACDLabs 12.01 O=C(N)C(C)(C)CNC(=O)C(C(C)C)CC(O)C(N)CN2CC(=O)N(c1ccccc1OCCCOC)CC2
R31 InChI InChI 1.03 InChI=1S/C28H47N5O6/c1-19(2)20(26(36)31-18-28(3,4)27(30)37)15-23(34)21(29)16-32-11-12-33(25(35)17-32)22-9-6-7-10-24(22)39-14-8-13-38-5/h6-7,9-10,19-21,23,34H,8,11-18,29H2,1-5H3,(H2,30,37)(H,31,36)/t20-,21-,23-/m0/s1
R31 InChIKey InChI 1.03 FOAHAYKWNMPVJI-FUDKSRODSA-N
R31 SMILES_CANONICAL CACTVS 3.370 COCCCOc1ccccc1N2CCN(C[C@H](N)[C@@H](O)C[C@@H](C(C)C)C(=O)NCC(C)(C)C(N)=O)CC2=O
R31 SMILES CACTVS 3.370 COCCCOc1ccccc1N2CCN(C[CH](N)[CH](O)C[CH](C(C)C)C(=O)NCC(C)(C)C(N)=O)CC2=O
R31 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)[C@H](C[C@@H]([C@H](CN1CCN(C(=O)C1)c2ccccc2OCCCOC)N)O)C(=O)NCC(C)(C)C(=O)N
R31 SMILES "OpenEye OEToolkits" 1.7.6 CC(C)C(CC(C(CN1CCN(C(=O)C1)c2ccccc2OCCCOC)N)O)C(=O)NCC(C)(C)C(=O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R31 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-4-hydroxy-6-{4-[2-(3-methoxypropoxy)phenyl]-3-oxopiperazin-1-yl}-2-(propan-2-yl)hexanamide (non-preferred name)"
R31 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S,4S,5S)-5-azanyl-N-(3-azanyl-2,2-dimethyl-3-oxidanylidene-propyl)-6-[4-[2-(3-methoxypropoxy)phenyl]-3-oxidanylidene-piperazin-1-yl]-4-oxidanyl-2-propan-2-yl-hexanamide
#
_pdbx_chem_comp_audit.comp_id R31
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-05-30
_pdbx_chem_comp_audit.processing_site PDBJ
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R31 C1 C 10.794 -3.840 1
R31 N2 N 12.093 -3.090 2
R31 C3 C 13.392 -3.840 3
R31 C4 C 13.392 -5.340 4
R31 N5 N 12.093 -6.090 5
R31 C6 C 10.794 -5.340 6
R31 C7 C 12.093 -7.590 7
R31 C8 C 10.794 -8.340 8
R31 C9 C 10.794 -9.840 9
R31 C10 C 12.093 -10.590 10
R31 C11 C 13.392 -9.840 11
R31 C12 C 13.392 -8.340 12
R31 O13 O 9.495 -7.590 13
R31 C14 C 8.196 -8.340 14
R31 C15 C 6.897 -7.590 15
R31 C16 C 5.598 -8.340 16
R31 O17 O 4.299 -7.590 17
R31 C18 C 3.000 -8.340 18
R31 C19 C 12.093 -1.590 19
R31 C20 C 13.392 -0.840 20
R31 C21 C 13.392 0.660 21
R31 N22 N 14.691 -1.590 22
R31 C23 C 14.691 1.410 23
R31 O24 O 12.093 1.410 24
R31 C25 C 14.691 2.910 25
R31 C26 C 15.990 3.660 26
R31 N27 N 15.990 5.160 27
R31 O28 O 17.290 2.910 28
R31 C29 C 13.392 3.660 29
R31 C30 C 17.290 5.910 30
R31 C31 C 17.290 7.410 31
R31 C32 C 17.290 8.910 32
R31 N33 N 15.990 9.660 33
R31 C34 C 15.790 7.410 34
R31 C35 C 18.790 7.410 35
R31 O36 O 18.588 9.660 36
R31 C37 C 12.093 2.910 37
R31 C38 C 13.392 5.160 38
R31 O39 O 9.495 -6.090 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R31 C18 O17 SINGLE NONE 1
R31 O17 C16 SINGLE NONE 2
R31 C16 C15 SINGLE NONE 3
R31 C14 C15 SINGLE NONE 4
R31 C14 O13 SINGLE NONE 5
R31 C9 C10 SINGLE NONE 6
R31 C9 C8 DOUBLE NONE 7
R31 C10 C11 DOUBLE NONE 8
R31 O13 C8 SINGLE NONE 9
R31 C8 C7 SINGLE NONE 10
R31 C11 C12 SINGLE NONE 11
R31 C12 C7 DOUBLE NONE 12
R31 C7 N5 SINGLE NONE 13
R31 C4 N5 SINGLE NONE 14
R31 C4 C3 SINGLE NONE 15
R31 N5 C6 SINGLE NONE 16
R31 C3 N2 SINGLE NONE 17
R31 C6 O39 DOUBLE NONE 18
R31 C6 C1 SINGLE NONE 19
R31 N2 C1 SINGLE NONE 20
R31 N2 C19 SINGLE NONE 21
R31 C19 C20 SINGLE NONE 22
R31 C20 N22 SINGLE BEGINWEDGE 23
R31 C20 C21 SINGLE NONE 24
R31 C21 O24 SINGLE BEGINWEDGE 25
R31 C21 C23 SINGLE NONE 26
R31 C25 C23 SINGLE BEGINWEDGE 27
R31 C38 C29 SINGLE NONE 28
R31 C25 C29 SINGLE NONE 29
R31 C25 C26 SINGLE NONE 30
R31 C29 C37 SINGLE NONE 31
R31 C26 N27 SINGLE NONE 32
R31 C26 O28 DOUBLE NONE 33
R31 N27 C30 SINGLE NONE 34
R31 C30 C31 SINGLE NONE 35
R31 N33 C32 SINGLE NONE 36
R31 C31 C32 SINGLE NONE 37
R31 C31 C35 SINGLE NONE 38
R31 C31 C34 SINGLE NONE 39
R31 C32 O36 DOUBLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R31 MurckoScaffold S1 scaffold O=C1CNCCN1c1ccccc1 InChI=1S/C10H12N2O/c13-10-8-11-6-7-12(10)9-4-2-1-3-5-9/h1-5,11H,6-8H2 YWUNGYFXNDOGNZ-UHFFFAOYSA-N
R31 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R31 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
R31 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R31 piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
R31 Z57040482 F5 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R31 C1 S1 1
R31 N2 S1 1
R31 C3 S1 1
R31 C4 S1 1
R31 N5 S1 1
R31 C6 S1 1
R31 C7 S1 1
R31 C8 S1 1
R31 C9 S1 1
R31 C10 S1 1
R31 C11 S1 1
R31 C12 S1 1
R31 O39 S1 1
R31 N5 F1 1
R31 C6 F1 1
R31 O39 F1 1
R31 C1 F1 1
R31 N27 F1 2
R31 C26 F1 2
R31 O28 F1 2
R31 C25 F1 2
R31 N33 F1 3
R31 C32 F1 3
R31 O36 F1 3
R31 C31 F1 3
R31 O39 F2 1
R31 C6 F2 1
R31 C1 F2 1
R31 N2 F2 1
R31 C7 F3 1
R31 C8 F3 1
R31 C9 F3 1
R31 C10 F3 1
R31 C11 F3 1
R31 C12 F3 1
R31 N2 F4 1
R31 C3 F4 1
R31 C4 F4 1
R31 N5 F4 1
R31 C6 F4 1
R31 C1 F4 1
R31 C1 F5 1
R31 C6 F5 1
R31 O39 F5 1
R31 N5 F5 1
R31 C7 F5 1
R31 C12 F5 1
R31 C11 F5 1
R31 C10 F5 1
R31 C9 F5 1
R31 C8 F5 1
R31 O13 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id R31
_pdbe_chem_comp_rdkit_properties.exactmw 549.353
_pdbe_chem_comp_rdkit_properties.amw 549.713
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 86
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.679
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 298.120
_pdbe_chem_comp_rdkit_properties.tpsa 160.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.114
_pdbe_chem_comp_rdkit_properties.CrippenMR 148.701
_pdbe_chem_comp_rdkit_properties.chi0v 18.686
_pdbe_chem_comp_rdkit_properties.chi1v 9.369
_pdbe_chem_comp_rdkit_properties.chi2v 3.630
_pdbe_chem_comp_rdkit_properties.chi3v 3.630
_pdbe_chem_comp_rdkit_properties.chi4v 1.977
_pdbe_chem_comp_rdkit_properties.chi0n 65.686
_pdbe_chem_comp_rdkit_properties.chi1n 32.513
_pdbe_chem_comp_rdkit_properties.chi2n 3.630
_pdbe_chem_comp_rdkit_properties.chi3n 3.630
_pdbe_chem_comp_rdkit_properties.chi4n 1.977
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.730
_pdbe_chem_comp_rdkit_properties.kappa1 6.353
_pdbe_chem_comp_rdkit_properties.kappa2 15.161
_pdbe_chem_comp_rdkit_properties.kappa3 9.752
_pdbe_chem_comp_rdkit_properties.Phi 2.470
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R31 UniChem PDBe R31
R31 UniChem ZINC ZINC000098209344
R31 UniChem PubChem 57519701
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R31 C1 2.451 0.459 1.880 ETKDGv3 1
R31 N2 1.769 -0.246 0.780 ETKDGv3 2
R31 C3 1.817 0.533 -0.470 ETKDGv3 3
R31 C4 3.264 0.590 -0.962 ETKDGv3 4
R31 N5 4.158 1.083 0.095 ETKDGv3 5
R31 C6 3.853 0.812 1.477 ETKDGv3 6
R31 C7 5.378 1.761 -0.261 ETKDGv3 7
R31 C8 6.368 1.115 -1.170 ETKDGv3 8
R31 C9 7.489 1.790 -1.505 ETKDGv3 9
R31 C10 7.744 3.137 -0.959 ETKDGv3 10
R31 C11 6.862 3.704 -0.131 ETKDGv3 11
R31 C12 5.627 2.986 0.233 ETKDGv3 12
R31 O13 6.091 -0.182 -1.639 ETKDGv3 13
R31 C14 6.995 -1.072 -2.299 ETKDGv3 14
R31 C15 7.754 -1.943 -1.291 ETKDGv3 15
R31 C16 8.785 -1.155 -0.475 ETKDGv3 16
R31 O17 9.583 -2.042 0.287 ETKDGv3 17
R31 C18 9.075 -2.159 1.599 ETKDGv3 18
R31 C19 0.411 -0.723 1.127 ETKDGv3 19
R31 C20 -0.583 0.396 1.557 ETKDGv3 20
R31 C21 -2.061 0.023 1.221 ETKDGv3 21
R31 N22 -0.419 0.643 2.996 ETKDGv3 22
R31 C23 -2.365 0.166 -0.300 ETKDGv3 23
R31 O24 -2.948 0.824 1.965 ETKDGv3 24
R31 C25 -3.680 -0.498 -0.799 ETKDGv3 25
R31 C26 -4.838 -0.307 0.159 ETKDGv3 26
R31 N27 -5.615 0.899 0.100 ETKDGv3 27
R31 O28 -5.084 -1.172 1.043 ETKDGv3 28
R31 C29 -3.499 -1.959 -1.329 ETKDGv3 29
R31 C30 -6.786 1.136 0.948 ETKDGv3 30
R31 C31 -8.113 0.777 0.227 ETKDGv3 31
R31 C32 -9.272 1.073 1.174 ETKDGv3 32
R31 N33 -9.422 0.347 2.398 ETKDGv3 33
R31 C34 -8.146 -0.718 -0.156 ETKDGv3 34
R31 C35 -8.251 1.617 -1.066 ETKDGv3 35
R31 O36 -10.107 1.979 0.903 ETKDGv3 36
R31 C37 -4.805 -2.512 -1.922 ETKDGv3 37
R31 C38 -2.915 -2.952 -0.311 ETKDGv3 38
R31 O39 4.741 0.935 2.365 ETKDGv3 39
R31 H1 2.481 -0.191 2.781 ETKDGv3 40
R31 H2 1.925 1.404 2.133 ETKDGv3 41
R31 H4 1.445 1.570 -0.316 ETKDGv3 42
R31 H5 1.197 0.051 -1.258 ETKDGv3 43
R31 H6 3.577 -0.433 -1.261 ETKDGv3 44
R31 H7 3.319 1.253 -1.853 ETKDGv3 45
R31 H8 8.233 1.373 -2.165 ETKDGv3 46
R31 H9 8.649 3.665 -1.229 ETKDGv3 47
R31 H10 7.050 4.691 0.271 ETKDGv3 48
R31 H11 4.914 3.467 0.892 ETKDGv3 49
R31 H12 7.680 -0.548 -2.994 ETKDGv3 50
R31 H13 6.384 -1.753 -2.929 ETKDGv3 51
R31 H14 8.282 -2.746 -1.849 ETKDGv3 52
R31 H15 7.025 -2.427 -0.607 ETKDGv3 53
R31 H16 8.283 -0.375 0.145 ETKDGv3 54
R31 H17 9.459 -0.619 -1.177 ETKDGv3 55
R31 H18 9.183 -1.200 2.151 ETKDGv3 56
R31 H19 8.012 -2.489 1.598 ETKDGv3 57
R31 H20 9.665 -2.928 2.139 ETKDGv3 58
R31 H21 0.018 -1.298 0.265 ETKDGv3 59
R31 H22 0.492 -1.477 1.940 ETKDGv3 60
R31 H23 -0.348 1.338 1.018 ETKDGv3 61
R31 H24 -2.228 -1.026 1.538 ETKDGv3 62
R31 H25 -0.882 -0.121 3.540 ETKDGv3 63
R31 H26 -0.880 1.547 3.250 ETKDGv3 64
R31 H28 -2.411 1.252 -0.539 ETKDGv3 65
R31 H29 -1.523 -0.222 -0.909 ETKDGv3 66
R31 H30 -2.797 1.770 1.700 ETKDGv3 67
R31 H31 -3.955 0.080 -1.711 ETKDGv3 68
R31 H32 -5.342 1.643 -0.580 ETKDGv3 69
R31 H33 -2.772 -1.910 -2.171 ETKDGv3 70
R31 H34 -6.801 2.211 1.232 ETKDGv3 71
R31 H35 -6.686 0.567 1.898 ETKDGv3 72
R31 H36 -8.742 -0.391 2.683 ETKDGv3 73
R31 H37 -10.220 0.560 3.037 ETKDGv3 74
R31 H38 -7.399 -0.941 -0.946 ETKDGv3 75
R31 H39 -7.922 -1.364 0.718 ETKDGv3 76
R31 H40 -9.148 -0.995 -0.550 ETKDGv3 77
R31 H41 -9.226 1.416 -1.560 ETKDGv3 78
R31 H42 -8.187 2.703 -0.838 ETKDGv3 79
R31 H43 -7.449 1.367 -1.794 ETKDGv3 80
R31 H44 -4.607 -3.464 -2.459 ETKDGv3 81
R31 H45 -5.236 -1.792 -2.650 ETKDGv3 82
R31 H46 -5.552 -2.710 -1.125 ETKDGv3 83
R31 H47 -1.882 -2.666 -0.037 ETKDGv3 84
R31 H48 -2.855 -3.965 -0.764 ETKDGv3 85
R31 H49 -3.537 -3.024 0.603 ETKDGv3 86
#